Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p088935 Quercus lobata HOM05D005757 ORTHO05D007090 3.5e-36 154.5 80 100.0
QL05p089323 Quercus lobata HOM05D005757 ORTHO05D007090 1.6e-33 145.6 75 100.0
QL10p041184 Quercus lobata HOM05D005757 ORTHO05D007090 2.4e-32 141.7 75 96.0
QL10p041477 Quercus lobata HOM05D005757 ORTHO05D007090 2.4e-32 141.7 75 96.0
Dinv16327 Davidia involucrata HOM05D005757 ORTHO05D007090 1.2e-31 139.4 75 93.3
Rhsim08G0000300 Rhododendron simsii HOM05D005757 ORTHO05D007090 1.3e-30 136.0 75 90.7
vmacro18686 Vaccinium macrocarpon HOM05D005757 ORTHO05D007090 2.2e-30 135.2 75 89.3
Actinidia16522 Actinidia chinensis HOM05D005757 ORTHO05D007090 3.8e-30 134.4 76 88.2
PGR119G2343 Punica granatum HOM05D005757 ORTHO05D007090 3.8e-30 134.4 75 88.0
CSS0011153 Camellia sinensis var. sinensis HOM05D005757 ORTHO05D007090 5.0e-30 134.0 75 89.3
Cfa002199 Carpinus fangiana HOM05D005757 ORTHO05D007090 5.0e-30 134.0 75 88.0
Sabra05G0055900 Salix brachista HOM05D005757 ORTHO05D007090 8.5e-30 133.3 82 85.4
Manes.12G147700 Manihot esculenta HOM05D005757 ORTHO05D007090 1.1e-29 132.9 80 83.8
Ca_16984_v3 Cicer arietinum L. HOM05D005757 ORTHO05D007090 1.4e-29 132.5 77 85.7
Glyma.04G210000 Glycine max HOM05D005757 ORTHO05D007090 2.5e-29 131.7 75 86.7
VMungo1309G1065 Vigna mungo HOM05D005757 ORTHO05D007090 2.5e-29 131.7 75 88.0
MD00G1091800 Malus domestica HOM05D005757 ORTHO05D007090 3.2e-29 131.3 75 88.0
Nitab4.5_0004105g0030 Nicotiana tabacum HOM05D005757 ORTHO05D007090 3.2e-29 131.3 75 85.3
Lj1g0019812 Lotus japonicus HOM05D005757 ORTHO05D007090 5.5e-29 130.6 75 86.7
Oeu037858.1 Olea europaea HOM05D005757 ORTHO05D007090 5.5e-29 130.6 75 86.7
RcHm_v2.0_Chr2g0122631 Rosa chinensis HOM05D005757 ORTHO05D007090 5.5e-29 130.6 75 86.7
TPR.G33548 Trifolium pratense HOM05D005757 ORTHO05D007090 5.5e-29 130.6 75 86.7
MSTRG.23485 Avicennia marina HOM05D005757 ORTHO05D007090 9.4e-29 129.8 75 85.3
Manes.12G159200 Manihot esculenta HOM05D005757 ORTHO05D007090 9.4e-29 129.8 80 82.5
Medtr3g096710 Medicago truncatula HOM05D005757 ORTHO05D007090 9.4e-29 129.8 75 85.3
SGA_v2.0_scaffold20G08952 Striga asiatica HOM05D005757 ORTHO05D007090 9.4e-29 129.8 75 85.3
Glyma.06G156000 Glycine max HOM05D005757 ORTHO05D007090 1.2e-28 129.4 75 85.3
Phvul.009G154300 Phaseolus vulgaris HOM05D005757 ORTHO05D007090 1.2e-28 129.4 75 85.3
Hund07233 Selenicereus undatus HOM05D005757 ORTHO05D007090 1.6e-28 129.0 76 81.6
Eucgr.I00121 Eucalyptus grandis HOM05D005757 ORTHO05D007090 2.1e-28 128.6 75 84.0
Prupe.4G275900 Prunus persica HOM05D005757 ORTHO05D007090 2.7e-28 128.3 75 84.0
ECA248G3451 Erigeron canadensis HOM05D005757 ORTHO05D007090 3.6e-28 127.9 75 84.0
Peaxi162Scf00842g00217 Petunia axillaris HOM05D005757 ORTHO05D007090 3.6e-28 127.9 75 84.0
Atru.chr4.999 Acer truncatum HOM05D005757 ORTHO05D007090 4.6e-28 127.5 75 81.3
CAN.G186.1 Capsicum annuum HOM05D005757 ORTHO05D007090 4.6e-28 127.5 75 82.7
MELO3C023217.2 Cucumis melo HOM05D005757 ORTHO05D007090 4.6e-28 127.5 75 84.0
CsaV3_2G019560 Cucumis sativus L. HOM05D005757 ORTHO05D007090 4.6e-28 127.5 75 84.0
Psat5g060320 Pisum sativum HOM05D005757 ORTHO05D007090 4.6e-28 127.5 75 84.0
Aqoxy6G00314 Aquilegia oxysepala HOM05D005757 ORTHO05D007090 6.1e-28 127.1 75 81.3
Lalb_Chr11g0068621 Lupinus albus HOM05D005757 ORTHO05D007090 6.1e-28 127.1 75 82.7
Solyc04g009430.3 Solanum lycopersicum HOM05D005757 ORTHO05D007090 6.1e-28 127.1 75 82.7
Sopen04g004560 Solanum pennellii HOM05D005757 ORTHO05D007090 6.1e-28 127.1 75 82.7
PGSC0003DMG400032556 Solanum tuberosum HOM05D005757 ORTHO05D007090 6.1e-28 127.1 75 82.7
CiPaw.04G079300 Carya illinoinensis HOM05D005757 ORTHO05D007090 7.9e-28 126.7 75 85.3
Nitab4.5_0010993g0010 Nicotiana tabacum HOM05D005757 ORTHO05D007090 7.9e-28 126.7 75 82.7
Cpa.g.sc37.11 Carica papaya HOM05D005757 ORTHO05D007090 1.4e-27 125.9 75 81.3
FvH4_1g24990 Fragaria vesca HOM05D005757 ORTHO05D007090 1.4e-27 125.9 75 84.0
HanXRQChr01g0019111 Helianthus annuus HOM05D005757 ORTHO05D007090 1.4e-27 125.9 75 84.0
AUR62006868 Chenopodium quinoa HOM05D005757 ORTHO05D007090 2.3e-27 125.2 76 78.9
THA.LOC104818419 Tarenaya hassleriana HOM05D005757 ORTHO05D007090 2.3e-27 125.2 75 81.3
AUR62000523 Chenopodium quinoa HOM05D005757 ORTHO05D007090 3.0e-27 124.8 76 78.9
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 3.0e-27 124.8 75 82.7
Lsat_1_v5_gn_7_106341 Lactuca sativa HOM05D005757 ORTHO05D007090 3.0e-27 124.8 75 82.7
CANSAT01G1027 Cannabis sativa HOM05D005757 ORTHO05D007090 3.9e-27 124.4 75 81.3
FAN23G0434 Fragaria x ananassa HOM05D005757 ORTHO05D007090 3.9e-27 124.4 75 82.7
FAN26G2810 Fragaria x ananassa HOM05D005757 ORTHO05D007090 3.9e-27 124.4 75 82.7
FAN28G1123 Fragaria x ananassa HOM05D005757 ORTHO05D007090 3.9e-27 124.4 75 82.7
MBI03_g28480_MAGBIO Magnolia biondii HOM05D005757 ORTHO05D007090 6.7e-27 123.6 73 83.6
PSO541G2210 Papaver somniferum HOM05D005757 ORTHO05D007090 6.7e-27 123.6 75 81.3
BcaB05g21563 Brassica carinata HOM05D005757 ORTHO05D007090 8.8e-27 123.2 75 82.7
Migut.H00828 Erythranthe guttata HOM05D005757 ORTHO05D007090 8.8e-27 123.2 75 80.0
BcaC03g13245 Brassica carinata HOM05D005757 ORTHO05D007090 1.1e-26 122.9 75 82.7
C02p03770 Brassica napus HOM05D005757 ORTHO05D007090 1.1e-26 122.9 75 82.7
BolC2t06338H Brassica oleracea HOM05D005757 ORTHO05D007090 1.1e-26 122.9 75 82.7
Ciclev10001356m.g Citrus clementina HOM05D005757 ORTHO05D007090 1.5e-26 122.5 75 82.7
DCAR_009593 Daucus carota HOM05D005757 ORTHO05D007090 1.5e-26 122.5 75 82.7
Thhalv10013744m.g Eutrema salsugineum HOM05D005757 ORTHO05D007090 1.5e-26 122.5 75 82.7
BraA02t04972Z Brassica rapa HOM05D005757 ORTHO05D007090 2.0e-26 122.1 75 82.7
Gohir.A05G381400 Gossypium hirsutum HOM05D005757 ORTHO05D007090 2.0e-26 122.1 75 78.7
Aa31LG3G17760 Aethionema arabicum HOM05D005757 ORTHO05D007090 2.5e-26 121.7 75 80.0
CARHR204190 Cardamine hirsuta HOM05D005757 ORTHO05D007090 2.5e-26 121.7 75 81.3
TAR625G0433 Trochodendron aralioides HOM05D005757 ORTHO05D007090 2.5e-26 121.7 75 78.7
Thecc.01G137800 Theobroma cacao HOM05D005757 ORTHO05D007090 3.3e-26 121.3 80 76.2
TWI75G1840 Tripterygium wilfordii HOM05D005757 ORTHO05D007090 3.3e-26 121.3 75 80.0
AL6G19620 Arabidopsis lyrata HOM05D005757 ORTHO05D007090 4.3e-26 120.9 75 81.3
AT5G09230 Arabidopsis thaliana HOM05D005757 ORTHO05D007090 7.4e-26 120.2 75 81.3
Carub.0006s0779 Capsella rubella HOM05D005757 ORTHO05D007090 7.4e-26 120.2 75 80.0
Nn1g08970 Nelumbo nucifera HOM05D005757 ORTHO05D007090 7.4e-26 120.2 75 81.3
COL.COLO4_35820 Corchorus olitorius HOM05D005757 ORTHO05D007090 9.7e-26 119.8 75 77.3
EL10Ac4g09631 Beta vulgaris HOM05D005757 ORTHO05D007090 2.2e-25 118.6 73 79.5
Gohir.D04G033900 Gossypium hirsutum HOM05D005757 ORTHO05D007090 2.8e-25 118.2 75 76.0
GSVIVG01022342001 Vitis vinifera HOM05D005757 ORTHO05D007090 4.8e-25 117.5 75 78.7
unitig_52.g17615 Utricularia gibba HOM05D005757 ORTHO05D007090 8.2e-25 116.7 75 78.7
Sp6g34070 Schrenkiella parvula HOM05D005757 ORTHO05D007090 1.4e-24 115.9 75 78.7
HPP92_011392 Vanilla planifolia HOM05D005757 ORTHO05D007090 2.6e-23 111.7 75 76.0
ATR0584G010 Amborella trichopoda HOM05D005757 ORTHO05D007090 7.7e-23 110.2 75 72.0
Lj7C583G3 Lonicera japonica HOM05D005757 ORTHO05D007090 6.5e-22 107.1 75 74.7
PSO675G6061 Papaver somniferum HOM05D005757 ORTHO05D007090 1.1e-21 106.3 111 55.0
Zm00001eb408300 Zea mays HOM05D005757 ORTHO05D007090 1.0e-19 99.8 75 65.3
ECA248G1240 Erigeron canadensis HOM05D005757 ORTHO05D007090 1.4e-19 99.4 75 64.0
Os12g0179800 Oryza sativa ssp. japonica HOM05D005757 ORTHO05D007090 3.0e-19 98.2 75 62.7
CDE08G1654 Ceratophyllum demersum HOM05D005757 ORTHO05D007090 8.8e-19 96.7 75 61.3
AagrBONN_evm.TU.Sc2ySwM_228.4835 Anthoceros agrestis HOM05D005757 ORTHO05D007090 2.2e-17 92.0 75 61.3
Pp3c16_14390 Physcomitrium patens HOM05D005757 ORTHO05D007090 1.1e-16 89.7 80 60.0
Sed0027545 Sechium edule HOM05D005757 ORTHO05D007090 1.4e-16 89.4 75 65.3
Mapoly0093s0042 Marchantia polymorpha HOM05D005757 ORTHO05D007090 2.0e-15 85.5 75 58.7
QL10p041201 Quercus lobata HOM05D005757 ORTHO05D007090 1.0e-14 83.2 45 95.6
SMO115G0270 Selaginella moellendorffii HOM05D005757 ORTHO05D007090 1.1e-13 79.7 75 53.3
Cc07_g19340 Coffea canephora HOM05D005757 ORTHO05D007090 2.5e-13 78.6 43 88.4
Lj1g0002676 Lotus japonicus HOM05D000058 ORTHO05D000077 2.5e-13 78.6 69 62.3
Sc16g0009550 Simmondsia chinensis HOM05D005757 ORTHO05D007090 1.8e-11 72.4 43 79.1
MCO15G064 Micromonas commoda HOM05D005757 ORTHO05D007090 3.0e-11 71.6 75 45.3
Gorai.012G038200 Gossypium raimondii HOM05D005757 ORTHO05D007090 4.0e-11 71.2 43 76.7
Cre12.g524650 Chlamydomonas reinhardtii HOM05D005757 ORTHO05D007090 4.8e-09 64.3 68 51.5
Cc07_g19330 Coffea canephora HOM05D005757 ORTHO05D007090 1.0e-06 56.6 34 82.4


User provided reference genes

Program Settings