Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p087685 Quercus lobata HOM05D004681 ORTHO05D005541 2.3e-154 548.9 281 100.0
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 2.8e-19 100.1 210 33.3
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 3.6e-19 99.8 210 33.8
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 1.8e-18 97.4 215 33.0
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 1.5e-17 94.4 205 34.1
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 2.0e-17 94.0 203 34.5
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 2.6e-17 93.6 207 34.3
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 5.8e-17 92.4 214 33.2
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 7.6e-17 92.0 207 34.3
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 9.9e-17 91.7 175 39.4
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 1.7e-16 90.9 209 33.5
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 2.9e-16 90.1 237 32.5
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 4.9e-16 89.4 215 31.6
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 6.4e-16 89.0 195 33.3
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 6.4e-16 89.0 214 34.6
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 1.1e-15 88.2 196 33.7
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 1.9e-15 87.4 211 32.2
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 1.9e-15 87.4 206 33.5
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 3.2e-15 86.7 194 34.0
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 3.2e-15 86.7 192 33.3
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 3.2e-15 86.7 192 34.4
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 5.4e-15 85.9 196 32.7
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 5.4e-15 85.9 220 30.9
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 9.3e-15 85.1 192 32.3
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 1.2e-14 84.7 209 30.6
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 1.2e-14 84.7 190 34.2
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 1.2e-14 84.7 200 32.0
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 1.2e-14 84.7 219 32.4
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 1.6e-14 84.3 211 29.9
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 1.6e-14 84.3 192 31.2
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 1.6e-14 84.3 192 31.2
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 1.6e-14 84.3 195 33.3
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 1.6e-14 84.3 206 31.6
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 1.6e-14 84.3 215 32.1
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 2.1e-14 84.0 208 32.2
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 2.1e-14 84.0 194 32.5
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 2.1e-14 84.0 193 34.7
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 2.7e-14 83.6 204 30.9
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 2.7e-14 83.6 192 31.8
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 3.5e-14 83.2 206 32.0
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 3.5e-14 83.2 205 32.2
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 4.6e-14 82.8 207 30.9
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 4.6e-14 82.8 200 32.5
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 4.6e-14 82.8 192 32.8
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 4.6e-14 82.8 207 30.9
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 4.6e-14 82.8 192 34.4
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 6.0e-14 82.4 208 30.8
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 6.0e-14 82.4 192 33.3
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 6.0e-14 82.4 192 32.8
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 6.0e-14 82.4 192 33.3
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 6.0e-14 82.4 192 32.8
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 6.0e-14 82.4 206 31.1
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 7.9e-14 82.0 208 32.2
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 1.0e-13 81.6 196 30.6
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 1.0e-13 81.6 200 33.5
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 1.0e-13 81.6 192 32.8
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 1.0e-13 81.6 208 31.7
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 1.0e-13 81.6 207 30.4
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 1.3e-13 81.3 193 32.1
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 1.3e-13 81.3 206 30.6
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 1.3e-13 81.3 193 31.1
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 1.8e-13 80.9 192 32.3
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 1.8e-13 80.9 192 32.3
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 1.8e-13 80.9 205 30.2
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 1.8e-13 80.9 191 31.4
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 2.3e-13 80.5 191 31.9
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 3.0e-13 80.1 163 35.0
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 3.0e-13 80.1 214 32.7
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 3.9e-13 79.7 193 31.6
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 3.9e-13 79.7 209 31.1
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 3.9e-13 79.7 207 30.9
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 3.9e-13 79.7 192 32.8
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 3.9e-13 79.7 191 31.9
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 6.7e-13 79.0 199 32.7
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 6.7e-13 79.0 205 31.7
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 6.7e-13 79.0 192 31.2
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 6.7e-13 79.0 191 30.4
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 8.7e-13 78.6 192 31.8
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 8.7e-13 78.6 209 29.2
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 8.7e-13 78.6 191 30.9
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 8.7e-13 78.6 205 32.7
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 1.1e-12 78.2 207 30.4
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 1.9e-12 77.4 205 28.3
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 3.3e-12 76.6 192 30.2
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 3.3e-12 76.6 194 33.0
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 5.6e-12 75.9 213 28.6
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 5.6e-12 75.9 198 31.8
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 5.6e-12 75.9 198 31.8
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 5.6e-12 75.9 216 28.7
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 5.6e-12 75.9 208 31.2
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 5.6e-12 75.9 210 31.4
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 9.6e-12 75.1 208 30.8
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 9.6e-12 75.1 219 30.1
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 2.8e-11 73.6 197 33.0
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 3.7e-11 73.2 197 32.5
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 3.7e-11 73.2 199 30.2
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 6.2e-11 72.4 197 31.0
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 8.1e-11 72.0 196 28.6
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 8.1e-11 72.0 223 30.5
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 8.1e-11 72.0 216 28.7
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 1.1e-10 71.6 191 29.8
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 1.8e-10 70.9 196 31.6
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 2.4e-10 70.5 208 29.8
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 4.0e-10 69.7 264 27.3
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 5.3e-10 69.3 164 32.9
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 6.9e-10 68.9 206 30.1
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 6.9e-10 68.9 197 31.5
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 9.0e-10 68.6 199 29.1
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 9.0e-10 68.6 198 29.8
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 1.2e-09 68.2 195 29.7
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 2.0e-09 67.4 201 28.9
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 2.6e-09 67.0 198 28.8
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 2.6e-09 67.0 208 28.4
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 3.4e-09 66.6 199 29.1
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 4.5e-09 66.2 184 30.4
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 5.8e-09 65.9 241 27.8
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 7.6e-09 65.5 97 40.2
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 9.9e-09 65.1 197 31.0
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 1.3e-08 64.7 204 28.4
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 2.2e-08 63.9 224 28.1
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 2.2e-08 63.9 224 28.1
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 2.9e-08 63.5 160 31.2
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 2.9e-08 63.5 185 32.4
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 3.8e-08 63.2 136 35.3
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 6.4e-08 62.4 209 29.7
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 6.4e-08 62.4 199 27.1
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 1.1e-07 61.6 197 28.4
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 1.1e-07 61.6 203 29.1
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 2.4e-07 60.5 204 27.9
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 3.2e-07 60.1 208 26.9
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 4.2e-07 59.7 197 28.9
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 1.2e-06 58.2 202 28.2
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.2e-06 58.2 209 29.7
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 4.6e-06 56.2 67 47.8
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 7.9e-06 55.5 71 38.0


User provided reference genes

Program Settings