Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p084699 Quercus lobata HOM05D007122 ORTHO05D008918 4.5e-32 140.6 68 100.0
QL05p084392 Quercus lobata HOM05D007122 ORTHO05D008918 4.1e-09 64.3 54 57.4
Haze_16258 Corylus avellana HOM05D007122 ORTHO05D008918 5.4e-09 63.9 54 55.6
ClCG07G014660 Citrullus lanatus HOM05D007122 ORTHO05D008918 1.6e-08 62.4 44 65.9
MELO3C026712.2 Cucumis melo HOM05D007122 ORTHO05D008918 1.6e-08 62.4 44 65.9
CsaV3_3G030490 Cucumis sativus L. HOM05D007122 ORTHO05D008918 1.6e-08 62.4 49 59.2
Phvul.010G164100 Phaseolus vulgaris HOM05D007122 ORTHO05D008918 2.7e-08 61.6 54 53.7
CiPaw.01G090900 Carya illinoinensis HOM05D007122 ORTHO05D008918 4.5e-08 60.8 54 51.9
Ciclev10021604m.g Citrus clementina HOM05D007122 ORTHO05D008918 5.9e-08 60.5 44 63.6
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 5.9e-08 60.5 48 56.2
Sed0017612 Sechium edule HOM05D007122 ORTHO05D008918 7.7e-08 60.1 44 61.4
Manes.01G237100 Manihot esculenta HOM05D007122 ORTHO05D008918 1.0e-07 59.7 53 52.8
PGR042G2951 Punica granatum HOM05D007122 ORTHO05D008918 1.0e-07 59.7 55 52.7
RcHm_v2.0_Chr2g0149531 Rosa chinensis HOM05D007122 ORTHO05D008918 1.0e-07 59.7 53 52.8
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 1.7e-07 58.9 54 51.9
QL05p083819 Quercus lobata HOM05D007122 ORTHO05D008918 1.7e-07 58.9 59 49.2
COL.COLO4_23084 Corchorus olitorius HOM05D007122 ORTHO05D008918 2.3e-07 58.5 44 61.4
Duzib133G0914 Durio zibethinus HOM05D007122 ORTHO05D008918 2.9e-07 58.2 53 52.8
MD17G1162500 Malus domestica HOM05D007122 ORTHO05D008918 2.9e-07 58.2 49 57.1
Sp4g28930 Schrenkiella parvula HOM05D007122 ORTHO05D008918 2.9e-07 58.2 43 62.8
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 3.8e-07 57.8 49 55.1
Dinv25395 Davidia involucrata HOM05D007122 ORTHO05D008918 5.0e-07 57.4 48 56.2
Dinv32665 Davidia involucrata HOM05D007122 ORTHO05D008918 5.0e-07 57.4 48 56.2
TPR.G38811 Trifolium pratense HOM05D007122 ORTHO05D008918 5.0e-07 57.4 54 51.9
VMungo0331G0463 Vigna mungo HOM05D000070 ORTHO05D003491 5.0e-07 57.4 44 61.4
Eucgr.E00013 Eucalyptus grandis HOM05D007122 ORTHO05D008918 6.6e-07 57.0 46 58.7
Prupe.3G022800 Prunus persica HOM05D007122 ORTHO05D008918 6.6e-07 57.0 53 50.9
EL10Ac5g10570 Beta vulgaris HOM05D007122 ORTHO05D008918 8.6e-07 56.6 43 60.5
CANSAT01G1971 Cannabis sativa HOM05D007122 ORTHO05D008918 8.6e-07 56.6 53 50.9
THA.LOC104802109 Tarenaya hassleriana HOM05D007122 ORTHO05D008918 8.6e-07 56.6 55 47.3
Cpa.g.sc57.60 Carica papaya HOM05D007122 ORTHO05D008918 1.1e-06 56.2 43 60.5
Medtr4g005390 Medicago truncatula HOM05D007122 ORTHO05D008918 1.1e-06 56.2 44 61.4
CARHR142260 Cardamine hirsuta HOM05D007122 ORTHO05D008918 1.5e-06 55.8 43 60.5
Thhalv10001577m.g Eutrema salsugineum HOM05D007122 ORTHO05D008918 1.5e-06 55.8 43 60.5
FvH4_6g36990 Fragaria vesca HOM05D007122 ORTHO05D008918 1.5e-06 55.8 53 50.9
FAN05G3936 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.5e-06 55.8 53 50.9
FAN14G1589 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.5e-06 55.8 53 50.9
arahy.Tifrunner.gnm1.ann1.KLKB5C Arachis hypogaea HOM05D007122 ORTHO05D008918 1.9e-06 55.5 53 50.9
Carub.0004s2963 Capsella rubella HOM05D007122 ORTHO05D008918 1.9e-06 55.5 48 52.1
Ca_20970_v3 Cicer arietinum L. HOM05D007122 ORTHO05D008918 1.9e-06 55.5 53 52.8
Lalb_Chr04g0264851 Lupinus albus HOM05D007122 ORTHO05D008918 1.9e-06 55.5 44 59.1
Solyc08g068590.4 Solanum lycopersicum HOM05D007122 ORTHO05D008918 1.9e-06 55.5 53 50.9
Sopen08g022350 Solanum pennellii HOM05D007122 ORTHO05D008918 1.9e-06 55.5 53 50.9
PGSC0003DMG400029047 Solanum tuberosum HOM05D007122 ORTHO05D008918 1.9e-06 55.5 53 50.9
arahy.Tifrunner.gnm1.ann1.XK7RJX Arachis hypogaea HOM05D007122 ORTHO05D008918 2.5e-06 55.1 51 54.9
Peaxi162Scf00822g00313 Petunia axillaris HOM05D007122 ORTHO05D008918 2.5e-06 55.1 53 49.1
BcaC02g12634 Brassica carinata HOM05D007122 ORTHO05D008918 3.3e-06 54.7 43 58.1
A05p00930 Brassica napus HOM05D007122 ORTHO05D008918 3.3e-06 54.7 43 58.1
Rhsim04G0175900 Rhododendron simsii HOM05D007122 ORTHO05D008918 3.3e-06 54.7 53 47.2
Thecc.01G329100 Theobroma cacao HOM05D007122 ORTHO05D008918 3.3e-06 54.7 44 61.4
Lj9A610T61 Lonicera japonica HOM05D007122 ORTHO05D008918 4.2e-06 54.3 57 50.9
TAR629G1569 Trochodendron aralioides HOM05D007122 ORTHO05D008918 4.2e-06 54.3 43 62.8
HPP92_007409 Vanilla planifolia HOM05D007122 ORTHO05D008918 4.2e-06 54.3 53 47.2
CAN.G21.48 Capsicum annuum HOM05D007122 ORTHO05D008918 5.5e-06 53.9 53 47.2
Gohir.A11G103000 Gossypium hirsutum HOM05D007122 ORTHO05D008918 5.5e-06 53.9 44 52.3
Gorai.007G115100 Gossypium raimondii HOM05D007122 ORTHO05D008918 5.5e-06 53.9 44 52.3
Nn1g00501 Nelumbo nucifera HOM05D007122 ORTHO05D008918 5.5e-06 53.9 43 60.5
Atru.chr5.816 Acer truncatum HOM05D007122 ORTHO05D008918 7.2e-06 53.5 48 50.0
AUR62008050 Chenopodium quinoa HOM05D007122 ORTHO05D008918 7.2e-06 53.5 35 71.4
AUR62028625 Chenopodium quinoa HOM05D007122 ORTHO05D008918 7.2e-06 53.5 35 71.4
Hma1.2p1_0074F.1_g038925 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 9.5e-06 53.1 43 58.1


User provided reference genes

Program Settings