Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p081774 Quercus lobata HOM05D004183 ORTHO05D005022 4.6e-52 207.6 105 100.0
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 2.5e-13 79.0 77 54.5
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 7.2e-13 77.4 77 53.2
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 7.2e-13 77.4 79 55.7
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 4.7e-12 74.7 83 50.6
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.0e-11 73.6 83 49.4
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 1.4e-11 73.2 76 52.6
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 2.3e-11 72.4 69 58.0
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 3.0e-11 72.0 83 48.2
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 3.0e-11 72.0 88 55.7
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 3.0e-11 72.0 83 49.4
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 4.0e-11 71.6 65 60.0
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 4.0e-11 71.6 70 51.4
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 8.8e-11 70.5 84 48.8
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 1.2e-10 70.1 78 55.1
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 1.2e-10 70.1 79 45.6
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.0e-10 69.3 83 49.4
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 7.5e-10 67.4 72 48.6
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 1.7e-09 66.2 69 49.3
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 2.2e-09 65.9 92 45.7
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 2.2e-09 65.9 84 46.4
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 2.8e-09 65.5 84 46.4
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.8e-09 65.5 79 48.1
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 6.3e-09 64.3 86 47.7
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 8.3e-09 63.9 84 45.2
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 8.3e-09 63.9 84 45.2
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 8.3e-09 63.9 84 45.2
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 8.3e-09 63.9 89 44.9
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.4e-08 63.2 73 49.3
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 1.4e-08 63.2 73 49.3
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 1.8e-08 62.8 84 46.4
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 1.8e-08 62.8 81 40.7
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 2.4e-08 62.4 84 45.2
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 2.4e-08 62.4 84 46.4
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 3.1e-08 62.0 97 41.2
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.1e-08 62.0 89 46.1
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 3.1e-08 62.0 80 48.8
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 3.1e-08 62.0 86 45.3
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 3.1e-08 62.0 84 47.6
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 4.1e-08 61.6 84 46.4
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 4.1e-08 61.6 84 46.4
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 7.0e-08 60.8 79 43.0
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 7.0e-08 60.8 77 40.3
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 7.0e-08 60.8 86 44.2
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.2e-07 60.1 62 51.6
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 1.2e-07 60.1 64 54.7
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 1.6e-07 59.7 84 48.8
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 2.7e-07 58.9 65 55.4
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 4.5e-07 58.2 84 41.7
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.5e-07 58.2 62 50.0
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 4.5e-07 58.2 96 38.5
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 5.9e-07 57.8 67 52.2
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 1.0e-06 57.0 68 50.0
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 1.7e-06 56.2 57 52.6
CARHR154530 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.7e-06 56.2 57 52.6
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 1.7e-06 56.2 68 51.5
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.7e-06 56.2 56 55.4
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 2.9e-06 55.5 74 48.6
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 2.9e-06 55.5 76 40.8
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 5.0e-06 54.7 86 45.3
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 8.6e-06 53.9 86 41.9


User provided reference genes

Program Settings