Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p081073 Quercus lobata HOM05D007836 ORTHO05D009876 5.6e-37 157.1 82 100.0
QL05p081076 Quercus lobata HOM05D007836 ORTHO05D009876 1.5e-26 122.5 70 95.7
Sabra04G0019100 Salix brachista HOM05D007836 ORTHO05D009876 2.7e-23 111.7 83 75.9
Cfa000343 Carpinus fangiana HOM05D007836 ORTHO05D009876 6.0e-23 110.5 72 84.7
COL.COLO4_31599 Corchorus olitorius HOM05D007836 ORTHO05D009876 6.0e-23 110.5 81 72.8
Potri.004G033300 Populus trichocarpa HOM05D007836 ORTHO05D009876 6.0e-23 110.5 82 75.6
Haze_06588 Corylus avellana HOM05D007836 ORTHO05D009876 1.0e-22 109.8 72 83.3
Potri.011G041700 Populus trichocarpa HOM05D007836 ORTHO05D009876 3.0e-22 108.2 84 73.8
Ciclev10017323m.g Citrus clementina HOM05D007836 ORTHO05D009876 1.9e-21 105.5 82 70.7
CiPaw.10G117600 Carya illinoinensis HOM05D007836 ORTHO05D009876 4.3e-21 104.4 83 72.3
Ca_00250_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 3.7e-20 101.3 83 66.3
Ca_29769_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 3.7e-20 101.3 83 66.3
Ca_29839_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 3.7e-20 101.3 83 66.3
TPR.G36842 Trifolium pratense HOM05D007836 ORTHO05D009876 6.2e-20 100.5 83 63.9
Psat1g208960 Pisum sativum HOM05D007836 ORTHO05D009876 2.4e-19 98.6 84 64.3
Medtr2g011690 Medicago truncatula HOM05D007836 ORTHO05D009876 3.1e-19 98.2 86 64.0
Thecc.06G201100 Theobroma cacao HOM05D007836 ORTHO05D009876 3.1e-19 98.2 83 62.7
TWI38G1692 Tripterygium wilfordii HOM05D007836 ORTHO05D009876 2.0e-18 95.5 80 68.8
Sabra11G0028600 Salix brachista HOM05D007836 ORTHO05D009876 2.6e-18 95.1 75 72.0
Migut.M01222 Erythranthe guttata HOM05D007836 ORTHO05D009876 5.8e-18 94.0 82 63.4
Nn1g03860 Nelumbo nucifera HOM05D007836 ORTHO05D009876 1.0e-17 93.2 82 63.4
Nn1g03862 Nelumbo nucifera HOM05D007836 ORTHO05D009876 1.0e-17 93.2 82 63.4
Hma1.2p1_1182F.1_g264760 Hydrangea macrophylla HOM05D007836 ORTHO05D009876 4.9e-17 90.9 85 64.7
TAR629G2038 Trochodendron aralioides HOM05D007836 ORTHO05D009876 8.4e-17 90.1 90 57.8
Prupe.4G035300 Prunus persica HOM05D007836 ORTHO05D009876 1.4e-16 89.4 82 59.8
Manes.16G019800 Manihot esculenta HOM05D007836 ORTHO05D009876 2.5e-16 88.6 83 66.3
TAR627G0603 Trochodendron aralioides HOM05D007836 ORTHO05D009876 3.2e-16 88.2 84 57.1
Nitab4.5_0000649g0060 Nicotiana tabacum HOM05D007836 ORTHO05D009876 3.5e-15 84.7 85 63.5
Atru.chr10.2022 Acer truncatum HOM05D007836 ORTHO05D009876 2.3e-14 82.0 74 59.5
Glyma.13G247000 Glycine max HOM05D007836 ORTHO05D009876 2.3e-14 82.0 85 56.5
Gohir.A10G021700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 2.3e-14 82.0 84 57.1
Gorai.011G023600 Gossypium raimondii HOM05D007836 ORTHO05D009876 3.9e-14 81.3 86 55.8
Rhsim02G0119100 Rhododendron simsii HOM05D007836 ORTHO05D009876 6.7e-14 80.5 71 64.8
QL08p037020 Quercus lobata HOM05D007836 ORTHO05D009876 1.9e-13 79.0 86 54.7
FAN11G3258 Fragaria x ananassa HOM05D007836 ORTHO05D009876 5.7e-13 77.4 90 62.2
Nitab4.5_0005389g0040 Nicotiana tabacum HOM05D007836 ORTHO05D009876 1.6e-12 75.9 85 58.8
PGR004G0674 Punica granatum HOM05D007836 ORTHO05D009876 1.6e-12 75.9 80 50.0
Lalb_Chr20g0122321 Lupinus albus HOM05D007836 ORTHO05D009876 3.7e-12 74.7 64 62.5
Gohir.D10G022500 Gossypium hirsutum HOM05D007836 ORTHO05D009876 4.8e-12 74.3 91 50.5
Migut.H01523 Erythranthe guttata HOM05D007836 ORTHO05D009876 1.8e-11 72.4 89 51.7
MBI18_g27690_MAGBIO Magnolia biondii HOM05D007836 ORTHO05D009876 1.8e-11 72.4 85 55.3
Potri.019G117800 Populus trichocarpa HOM05D007836 ORTHO05D009876 1.8e-11 72.4 86 53.5
Sabra19G0118200 Salix brachista HOM05D007836 ORTHO05D009876 1.8e-11 72.4 86 48.8
CiPaw.03G168400 Carya illinoinensis HOM05D007836 ORTHO05D009876 4.0e-11 71.2 90 47.8
FAN21G2853 Fragaria x ananassa HOM05D007836 ORTHO05D009876 5.3e-11 70.9 72 59.7
Phvul.006G192700 Phaseolus vulgaris HOM05D007836 ORTHO05D009876 1.2e-10 69.7 74 55.4
FvH4_3g03810 Fragaria vesca HOM05D007836 ORTHO05D009876 1.5e-10 69.3 91 57.1
Gohir.D06G127700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 2.0e-10 68.9 67 61.2
Gorai.010G149400 Gossypium raimondii HOM05D007836 ORTHO05D009876 2.0e-10 68.9 67 61.2
Cfa014529 Carpinus fangiana HOM05D007836 ORTHO05D009876 2.6e-10 68.6 92 48.9
FAN16G2096 Fragaria x ananassa HOM05D007836 ORTHO05D009876 2.6e-10 68.6 91 57.1
Ciclev10018116m.g Citrus clementina HOM05D007836 ORTHO05D009876 3.4e-10 68.2 75 52.0
Atru.chr6.3083 Acer truncatum HOM05D007836 ORTHO05D009876 1.7e-09 65.9 98 45.9
Aqoxy1G03904 Aquilegia oxysepala HOM05D007836 ORTHO05D009876 2.2e-09 65.5 86 47.7
Gohir.A06G209201 Gossypium hirsutum HOM05D007836 ORTHO05D009876 2.2e-09 65.5 69 60.9
CAN.G424.25 Capsicum annuum HOM05D007836 ORTHO05D009876 5.0e-09 64.3 83 50.6
COL.COLO4_13657 Corchorus olitorius HOM05D007836 ORTHO05D009876 1.4e-08 62.8 85 47.1
Eucgr.L02510 Eucalyptus grandis HOM05D007836 ORTHO05D009876 2.5e-08 62.0 82 52.4
Manes.13G152300 Manihot esculenta HOM05D007836 ORTHO05D009876 4.2e-08 61.2 81 44.4
Sed0016301 Sechium edule HOM05D007836 ORTHO05D009876 5.5e-08 60.8 67 56.7
Eucgr.L02509 Eucalyptus grandis HOM05D007836 ORTHO05D009876 7.1e-08 60.5 82 51.2
SHI24864 Sapria himalayana HOM05D007836 ORTHO05D009876 1.2e-07 59.7 73 50.7
ClCG01G022480 Citrullus lanatus HOM05D007836 ORTHO05D009876 2.1e-07 58.9 83 49.4
Solyc02g079240.1 Solanum lycopersicum HOM05D007836 ORTHO05D009876 3.5e-07 58.2 79 51.9
Thecc.02G170500 Theobroma cacao HOM05D007836 ORTHO05D009876 3.5e-07 58.2 81 46.9
CiPaw.03G168900 Carya illinoinensis HOM05D000831 ORTHO05D000660 6.1e-07 57.4 91 40.7
CiPaw.03G169000 Carya illinoinensis HOM05D000831 ORTHO05D000660 6.1e-07 57.4 91 40.7
CiPaw.03G169100 Carya illinoinensis HOM05D000831 ORTHO05D000660 6.1e-07 57.4 91 40.7
Sp6g07160 Schrenkiella parvula HOM05D000831 ORTHO05D000660 7.9e-07 57.0 77 46.8
Aa31LG9G11730 Aethionema arabicum HOM05D000831 ORTHO05D000660 1.0e-06 56.6 76 48.7
Prupe.3G229000 Prunus persica HOM05D000831 ORTHO05D000660 1.0e-06 56.6 84 39.3
CARHR032800 Cardamine hirsuta HOM05D000831 ORTHO05D000660 1.8e-06 55.8 77 45.5
Cfa014533 Carpinus fangiana HOM05D000831 ORTHO05D000660 1.8e-06 55.8 84 40.5
Cfa014536 Carpinus fangiana HOM05D000831 ORTHO05D000660 1.8e-06 55.8 84 40.5
Eucgr.E03810 Eucalyptus grandis HOM05D038013 ORTHO05D009876 1.8e-06 55.8 75 48.0
Prupe.3G229400 Prunus persica HOM05D000831 ORTHO05D000660 1.8e-06 55.8 84 38.1
Prupe.3G229500 Prunus persica HOM05D000831 ORTHO05D000660 1.8e-06 55.8 84 39.3
Cfa014535 Carpinus fangiana HOM05D000831 ORTHO05D000660 2.3e-06 55.5 84 40.5
CiPaw.03G169200 Carya illinoinensis HOM05D000831 ORTHO05D000660 2.3e-06 55.5 91 39.6
CiPaw.03G169400 Carya illinoinensis HOM05D000831 ORTHO05D000660 2.3e-06 55.5 91 39.6
Cfa014532 Carpinus fangiana HOM05D000831 ORTHO05D000660 3.0e-06 55.1 84 40.5
CiPaw.03G168600 Carya illinoinensis HOM05D000831 ORTHO05D000660 3.0e-06 55.1 83 38.6
RcHm_v2.0_Chr2g0161461 Rosa chinensis HOM05D000831 ORTHO05D000660 3.0e-06 55.1 83 38.6
AL6G44110 Arabidopsis lyrata HOM05D000831 ORTHO05D000660 3.9e-06 54.7 76 44.7
Cpa.g.sc12.26 Carica papaya HOM05D000831 ORTHO05D000660 3.9e-06 54.7 73 46.6
CiPaw.03G169300 Carya illinoinensis HOM05D000831 ORTHO05D000660 3.9e-06 54.7 91 39.6
Actinidia11813 Actinidia chinensis HOM05D007380 ORTHO05D009269 5.1e-06 54.3 61 59.0
Cc05_g06160 Coffea canephora HOM05D000831 ORTHO05D000660 5.1e-06 54.3 72 44.4
Sopen02g024060 Solanum pennellii HOM05D007836 ORTHO05D009876 5.1e-06 54.3 92 43.5
AT4G10270 Arabidopsis thaliana HOM05D000831 ORTHO05D000660 6.7e-06 53.9 76 44.7
Eucgr.E03817 Eucalyptus grandis HOM05D038013 ORTHO05D009876 6.7e-06 53.9 73 49.3
Gorai.010G254100 Gossypium raimondii HOM05D007836 ORTHO05D009876 6.7e-06 53.9 71 46.5
RcHm_v2.0_Chr2g0161481 Rosa chinensis HOM05D000831 ORTHO05D000660 6.7e-06 53.9 83 37.3
CARHR256510 Cardamine hirsuta HOM05D000831 ORTHO05D000660 8.7e-06 53.5 77 42.9
Ca_01542_v3 Cicer arietinum L. HOM05D000831 ORTHO05D000660 8.7e-06 53.5 73 46.6
Sp6g07170 Schrenkiella parvula HOM05D000831 ORTHO05D000660 8.7e-06 53.5 77 44.2
THA.LOC104812666 Tarenaya hassleriana HOM05D010797 ORTHO05D012946 8.7e-06 53.5 70 48.6


User provided reference genes

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