Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 3.2e-151 540.0 848 100.0
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 2.1e-62 245.0 853 81.9
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 1.6e-46 192.2 201 56.7
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 5.8e-44 183.7 193 52.8
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 2.2e-43 181.8 145 60.0
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 6.4e-43 180.3 143 59.4
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 2.4e-42 178.3 143 58.7
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 1.5e-39 169.1 178 49.4
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.5e-39 169.1 141 58.9
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 1.5e-39 169.1 141 53.2
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 3.3e-39 167.9 179 50.3
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 3.3e-39 167.9 143 55.9
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 4.3e-39 167.5 251 43.0
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 4.3e-39 167.5 235 43.8
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 7.3e-39 166.8 236 44.1
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 9.6e-39 166.4 143 54.5
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.2e-38 166.0 141 58.2
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 1.6e-38 165.6 141 58.2
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 2.8e-38 164.9 143 58.0
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 1.1e-37 162.9 145 57.2
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 1.4e-37 162.5 141 57.4
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.4e-37 162.5 141 57.4
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 1.4e-37 162.5 141 57.4
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 3.1e-37 161.4 146 50.7
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 4.0e-37 161.0 210 41.9
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 9.0e-37 159.8 224 43.8
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 1.2e-36 159.5 192 46.9
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 1.5e-36 159.1 168 49.4
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 1.5e-36 159.1 139 57.6
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 4.4e-36 157.5 174 48.3
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 5.8e-36 157.1 141 51.8
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 1.3e-35 156.0 207 43.0
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 1.7e-35 155.6 138 56.5
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 1.7e-35 155.6 174 48.3
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 4.9e-35 154.1 175 48.0
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 8.4e-35 153.3 141 53.2
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 8.4e-35 153.3 141 51.1
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 1.1e-34 152.9 162 50.0
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 1.4e-34 152.5 145 53.8
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 1.4e-34 152.5 126 57.1
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 1.4e-34 152.5 174 45.4
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 1.9e-34 152.1 231 39.8
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 2.4e-34 151.8 146 52.7
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 3.2e-34 151.4 142 51.4
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 5.4e-34 150.6 212 43.4
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 7.1e-34 150.2 147 54.4
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 1.2e-33 149.4 239 40.6
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 1.2e-33 149.4 239 40.6
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 1.2e-33 149.4 240 40.4
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 2.7e-33 148.3 156 46.2
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 1.3e-32 146.0 151 52.3
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 1.7e-32 145.6 224 38.8
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 5.1e-32 144.1 141 48.9
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 8.7e-32 143.3 203 41.9
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 2.5e-31 141.7 145 49.7
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 1.3e-30 139.4 141 49.6
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 1.4e-29 136.0 166 46.4
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 3.1e-29 134.8 141 47.5
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 4.0e-29 134.4 142 48.6
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 9.0e-29 133.3 135 49.6
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 9.0e-29 133.3 143 44.1
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 1.5e-28 132.5 149 44.3
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 2.0e-28 132.1 143 44.8
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 3.4e-28 131.3 141 47.5
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 3.4e-28 131.3 140 48.6
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 4.5e-28 131.0 173 39.3
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 7.6e-28 130.2 169 43.8
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 7.6e-28 130.2 168 42.9
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 9.9e-28 129.8 140 47.9
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 9.9e-28 129.8 140 47.9
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 9.9e-28 129.8 141 50.4
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 1.3e-27 129.4 140 50.0
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.3e-27 129.4 166 42.8
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 3.8e-27 127.9 139 44.6
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 4.9e-27 127.5 167 40.7
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 4.9e-27 127.5 116 54.3
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 6.4e-27 127.1 175 39.4
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 2.4e-26 125.2 142 48.6
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 2.4e-26 125.2 147 46.3
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 2.4e-26 125.2 160 40.6
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 3.2e-26 124.8 173 37.0
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 5.4e-26 124.0 141 49.6
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 9.3e-26 123.2 145 42.8
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 1.6e-25 122.5 140 45.7
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.7e-25 121.7 167 39.5
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 3.5e-25 121.3 159 41.5
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 6.0e-25 120.6 141 44.0
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 7.9e-25 120.2 197 37.1
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 1.0e-24 119.8 196 37.8
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 2.3e-24 118.6 175 37.7
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 3.0e-24 118.2 163 36.8
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 8.7e-24 116.7 152 43.4
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 2.5e-23 115.2 150 41.3
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 2.5e-23 115.2 176 38.6
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 9.6e-23 113.2 188 35.1
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 2.1e-22 112.1 179 40.2
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 2.1e-22 112.1 147 40.1
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 2.8e-22 111.7 100 59.0
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 3.7e-22 111.3 220 32.7
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 8.1e-22 110.2 178 36.5
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 3.1e-21 108.2 139 38.1
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 1.5e-20 105.9 144 38.2
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 5.8e-20 104.0 195 33.3
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 7.6e-20 103.6 197 33.5
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 9.9e-20 103.2 140 40.0
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.7e-19 102.4 140 40.0
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 2.9e-19 101.7 141 38.3
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 1.4e-18 99.4 173 35.3
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 5.5e-18 97.4 140 40.0
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 9.3e-18 96.7 143 36.4
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 6.0e-17 94.0 151 37.7
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 6.7e-16 90.5 164 32.9
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 1.1e-15 89.7 136 33.8
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 1.9e-15 89.0 77 61.0
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 5.6e-15 87.4 126 38.1
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 2.1e-14 85.5 123 39.0
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 2.8e-14 85.1 156 33.3
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 3.7e-14 84.7 139 38.1
SHI28137 Sapria himalayana HOM05D008459 ORTHO05D003903 4.8e-14 84.3 81 46.9
A06p09890 Brassica napus HOM05D004824 ORTHO05D003903 6.9e-13 80.5 123 39.0
BraA06t24177Z Brassica rapa HOM05D004824 ORTHO05D003903 9.0e-13 80.1 123 39.0
SHI33202 Sapria himalayana HOM05D008459 ORTHO05D003903 1.5e-12 79.3 78 46.2
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 2.6e-12 78.6 72 51.4
BcaC05g25286 Brassica carinata HOM05D004824 ORTHO05D003903 1.0e-11 76.6 171 33.3
C05p11650 Brassica napus HOM05D004824 ORTHO05D003903 1.0e-11 76.6 171 33.3
BolC5t29912H Brassica oleracea HOM05D004824 ORTHO05D003903 1.0e-11 76.6 171 33.3
BcaB02g06478 Brassica carinata HOM05D004824 ORTHO05D003903 1.7e-11 75.9 114 36.8
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 1.7e-11 75.9 85 47.1
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 2.9e-11 75.1 91 44.0
SHI35543 Sapria himalayana HOM05D008459 ORTHO05D003903 3.8e-11 74.7 82 43.9
QL04p023129 Quercus lobata HOM05D000271 ORTHO05D003903 8.4e-11 73.6 74 68.9
Zm00001eb413560 Zea mays HOM05D026208 ORTHO05D030341 8.4e-11 73.6 188 28.2
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 1.9e-10 72.4 81 40.7
Zm00001eb140410 Zea mays HOM05D026208 ORTHO05D030341 1.9e-10 72.4 170 28.8
HanXRQChr13g0425261 Helianthus annuus HOM05D004824 ORTHO05D003903 5.5e-10 70.9 85 44.7
MELO3C010547.2 Cucumis melo HOM05D004824 ORTHO05D003903 7.1e-10 70.5 64 54.7
BcaB08g37396 Brassica carinata HOM05D004824 ORTHO05D017526 1.6e-09 69.3 140 32.9
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 2.1e-09 68.9 95 40.0
SHI50109 Sapria himalayana HOM05D008459 ORTHO05D003903 2.7e-09 68.6 79 41.8
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 1.0e-08 66.6 85 44.7
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.0e-08 66.6 143 28.0
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.3e-08 66.2 155 25.2
SHI48935 Sapria himalayana HOM05D008459 ORTHO05D003903 1.8e-08 65.9 81 42.0
AUR62027511 Chenopodium quinoa HOM05D004824 ORTHO05D003903 3.0e-08 65.1 78 47.4
Eucgr.F01187 Eucalyptus grandis HOM05D004824 ORTHO05D003903 3.0e-08 65.1 84 42.9
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 3.0e-08 65.1 80 45.0
SHI51070 Sapria himalayana HOM05D008459 ORTHO05D003903 3.9e-08 64.7 79 40.5
SHI35270 Sapria himalayana HOM05D008459 ORTHO05D000778 6.7e-08 63.9 75 41.3
SHI41352 Sapria himalayana HOM05D008459 ORTHO05D003903 6.7e-08 63.9 79 40.5
SHI50547 Sapria himalayana HOM05D008459 ORTHO05D003903 6.7e-08 63.9 79 40.5
SHI40908 Sapria himalayana HOM05D008459 ORTHO05D003903 8.7e-08 63.5 79 39.2
Potri.015G105400 Populus trichocarpa HOM05D005764 ORTHO05D006600 1.1e-07 63.2 163 25.8
SHI49399 Sapria himalayana HOM05D008459 ORTHO05D003903 1.5e-07 62.8 79 39.2
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 1.9e-07 62.4 142 25.4
ATR0680G090 Amborella trichopoda HOM05D007893 ORTHO05D010042 2.5e-07 62.0 139 25.9
CARHR118970 Cardamine hirsuta HOM05D004824 ORTHO05D003903 4.3e-07 61.2 83 41.0
TWI75G0531 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.3e-07 61.2 139 23.7
TWI75G0860 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.3e-07 61.2 139 23.7
TWI75G1402 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.3e-07 61.2 139 23.7
Nitab4.5_0000256g0090 Nicotiana tabacum HOM05D007893 ORTHO05D010042 5.7e-07 60.8 142 24.6
SHI35413 Sapria himalayana HOM05D008459 ORTHO05D003903 5.7e-07 60.8 75 40.0
Thecc.03G306900 Theobroma cacao HOM05D007893 ORTHO05D010042 9.7e-07 60.1 142 26.8
TWI75G0965 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 9.7e-07 60.1 139 23.7
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 9.7e-07 60.1 139 23.7
SHI36947 Sapria himalayana HOM05D008459 ORTHO05D003903 1.3e-06 59.7 71 42.3
CARHR014470 Cardamine hirsuta HOM05D004824 ORTHO05D017526 2.8e-06 58.5 119 34.5
arahy.Tifrunner.gnm1.ann1.F7MB9I Arachis hypogaea HOM05D004824 ORTHO05D003903 3.7e-06 58.2 50 48.0
TAR374G1349 Trochodendron aralioides HOM05D007893 ORTHO05D010042 3.7e-06 58.2 138 21.7
SHI50303 Sapria himalayana HOM05D008459 ORTHO05D003903 4.8e-06 57.8 81 38.3


User provided reference genes

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