Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p077842 Quercus lobata HOM05D007301 ORTHO05D002389 6.5e-169 597.4 326 100.0
CiPaw.09G153900 Carya illinoinensis HOM05D007301 ORTHO05D002389 4.3e-72 275.8 353 60.3
Cfa000294 Carpinus fangiana HOM05D007301 ORTHO05D002389 8.7e-57 224.9 338 45.6
Haze_06650 Corylus avellana HOM05D007301 ORTHO05D002389 4.5e-53 212.6 325 44.6
Haze_06639 Corylus avellana HOM05D007301 ORTHO05D002389 1.0e-52 211.5 325 44.3
GSVIVG01006515001 Vitis vinifera HOM05D007301 ORTHO05D002389 6.3e-47 192.2 347 47.6
Prupe.4G030800 Prunus persica HOM05D007301 ORTHO05D002389 1.8e-46 190.7 364 40.7
Potri.011G032700 Populus trichocarpa HOM05D007301 ORTHO05D002389 2.9e-44 183.3 364 44.5
Lalb_Chr15g0090181 Lupinus albus HOM05D007301 ORTHO05D002389 3.2e-43 179.9 345 41.4
Phvul.006G195200 Phaseolus vulgaris HOM05D007301 ORTHO05D002389 1.4e-41 174.5 351 36.2
Duzib235G0854 Durio zibethinus HOM05D007301 ORTHO05D002389 2.2e-39 167.2 296 51.0
Atru.chr10.2080 Acer truncatum HOM05D007301 ORTHO05D002389 1.1e-38 164.9 341 38.4
Manes.16G015600 Manihot esculenta HOM05D007301 ORTHO05D002389 1.8e-38 164.1 301 40.5
TWI63G0057 Tripterygium wilfordii HOM05D007301 ORTHO05D002389 4.1e-38 162.9 343 39.1
Gohir.A06G122000 Gossypium hirsutum HOM05D007301 ORTHO05D002389 5.3e-38 162.5 296 47.6
Glyma.13G250000 Glycine max HOM05D007301 ORTHO05D002389 2.0e-37 160.6 363 35.3
Gorai.010G147000 Gossypium raimondii HOM05D007301 ORTHO05D002389 1.0e-36 158.3 282 40.8
Gohir.D06G126100 Gossypium hirsutum HOM05D007301 ORTHO05D002389 2.2e-36 157.1 282 40.8
Thecc.06G206100 Theobroma cacao HOM05D007301 ORTHO05D002389 8.5e-36 155.2 213 46.5
MD05G1334500 Malus domestica HOM05D007301 ORTHO05D002389 7.2e-35 152.1 331 37.2
Lj6g0023608 Lotus japonicus HOM05D007301 ORTHO05D002389 1.6e-34 151.0 357 38.7
Atru.chr10.2079 Acer truncatum HOM05D007301 ORTHO05D002389 3.9e-33 146.4 306 36.3
CANSAT56G1725 Cannabis sativa HOM05D007301 ORTHO05D002389 6.3e-31 139.0 360 33.6
Glyma.15G064200 Glycine max HOM05D007301 ORTHO05D002389 1.4e-30 137.9 278 36.3
ClCG03G005250 Citrullus lanatus HOM05D007301 ORTHO05D002389 4.1e-30 136.3 349 32.4
Dinv17861 Davidia involucrata HOM05D007301 ORTHO05D002389 2.6e-29 133.7 379 40.4
FvH4_3g03190 Fragaria vesca HOM05D007301 ORTHO05D002389 2.2e-28 130.6 329 33.1
Ciclev10016236m.g Citrus clementina HOM05D007301 ORTHO05D002389 3.8e-28 129.8 304 37.8
Atru.chr10.2091 Acer truncatum HOM05D007301 ORTHO05D002389 5.0e-28 129.4 312 39.4
Cc02_g11930 Coffea canephora HOM05D007301 ORTHO05D002389 5.0e-28 129.4 358 33.8
FAN21G3361 Fragaria x ananassa HOM05D007301 ORTHO05D002389 6.5e-28 129.0 321 33.0
RcHm_v2.0_Chr5g0004821 Rosa chinensis HOM05D007301 ORTHO05D002389 1.4e-27 127.9 325 35.4
Medtr2g010980 Medicago truncatula HOM05D007301 ORTHO05D002389 1.9e-27 127.5 318 40.9
Ca_00213_v3 Cicer arietinum L. HOM05D007301 ORTHO05D002389 3.2e-27 126.7 334 33.2
FAN25G3745 Fragaria x ananassa HOM05D007301 ORTHO05D002389 4.2e-27 126.3 329 33.4
Psat1g210680 Pisum sativum HOM05D007301 ORTHO05D002389 5.5e-27 125.9 340 37.4
COL.COLO4_31668 Corchorus olitorius HOM05D000687 ORTHO05D002389 9.4e-27 125.2 178 45.5
Sabra11G0025900 Salix brachista HOM05D007301 ORTHO05D002389 2.1e-26 124.0 384 32.8
TAR623G0342 Trochodendron aralioides HOM05D007301 ORTHO05D002389 6.1e-26 122.5 284 36.6
arahy.Tifrunner.gnm1.ann1.1PF2AY Arachis hypogaea HOM05D007301 ORTHO05D002389 2.3e-25 120.6 403 30.3
MELO3C002521.2 Cucumis melo HOM05D007301 ORTHO05D002389 3.9e-25 119.8 363 32.5
VMungo0540G0977 Vigna mungo HOM05D007301 ORTHO05D002389 8.8e-25 118.6 372 31.5
CSS0002302 Camellia sinensis var. sinensis HOM05D000603 ORTHO05D002642 2.0e-24 117.5 210 40.0
Cpa.g.sc871.4 Carica papaya HOM05D007301 ORTHO05D002389 4.4e-24 116.3 299 34.1
AUR62014643 Chenopodium quinoa HOM05D007301 ORTHO05D002389 1.7e-23 114.4 237 37.6
BcaC07g38666 Brassica carinata HOM05D007301 ORTHO05D002389 2.8e-23 113.6 315 32.7
BolC8t49099H Brassica oleracea HOM05D007301 ORTHO05D002389 2.8e-23 113.6 315 32.7
Nitab4.5_0003045g0050 Nicotiana tabacum HOM05D007301 ORTHO05D002389 1.8e-22 110.9 311 30.2
C08p14500 Brassica napus HOM05D007301 ORTHO05D002389 2.4e-22 110.5 320 36.2
Hma1.2p1_0809F.1_g221835 Hydrangea macrophylla HOM05D007301 ORTHO05D002389 3.1e-22 110.2 368 36.7
TPR.G32659 Trifolium pratense HOM05D007301 ORTHO05D002389 3.1e-22 110.2 342 35.7
Sed0025707 Sechium edule HOM05D007301 ORTHO05D002389 5.3e-22 109.4 290 32.1
AUR62012556 Chenopodium quinoa HOM05D007301 ORTHO05D002389 7.0e-22 109.0 241 34.9
SalBow8G1107 Salvia bowleyana HOM05D007301 ORTHO05D002389 7.0e-22 109.0 286 39.2
Dinv18959 Davidia involucrata HOM05D000603 ORTHO05D002642 1.6e-21 107.8 227 36.1
Sopen02g024550 Solanum pennellii HOM05D007301 ORTHO05D002389 2.0e-21 107.5 355 31.0
Sc05g0008310 Simmondsia chinensis HOM05D007301 ORTHO05D002389 2.6e-21 107.1 315 30.8
Solyc02g079780.1 Solanum lycopersicum HOM05D007301 ORTHO05D002389 2.6e-21 107.1 354 30.5
Eucgr.E03612 Eucalyptus grandis HOM05D007301 ORTHO05D002389 4.5e-21 106.3 344 30.2
SGA_v2.0_scaffold7G03899 Striga asiatica HOM05D007301 ORTHO05D002389 4.5e-21 106.3 304 29.9
Aqoxy1G00617 Aquilegia oxysepala HOM05D007301 ORTHO05D002389 7.7e-21 105.5 239 33.9
A08p33460 Brassica napus HOM05D007301 ORTHO05D002389 2.2e-20 104.0 291 39.9
Peaxi162Scf00931g00032 Petunia axillaris HOM05D007301 ORTHO05D002389 2.2e-20 104.0 352 30.7
Oeu050575.1 Olea europaea HOM05D007301 ORTHO05D002389 2.5e-19 100.5 379 27.4
BraA08t35262Z Brassica rapa HOM05D007301 ORTHO05D002389 3.2e-19 100.1 296 35.1
BcaB03g13255 Brassica carinata HOM05D007301 ORTHO05D002389 5.5e-19 99.4 318 30.2
PGR042G3055 Punica granatum HOM05D007301 ORTHO05D002389 6.1e-18 95.9 371 28.6
CsaV3_1G011450 Cucumis sativus L. HOM05D007301 ORTHO05D002389 8.0e-18 95.5 351 29.9
DCAR_004167 Daucus carota HOM05D007301 ORTHO05D002389 8.0e-18 95.5 392 29.8
CAN.G424.85 Capsicum annuum HOM05D007301 ORTHO05D002389 1.4e-17 94.7 373 25.7
Thhalv10009480m.g Eutrema salsugineum HOM05D007301 ORTHO05D002389 1.8e-17 94.4 337 34.1
PGSC0003DMG400021709 Solanum tuberosum HOM05D007301 ORTHO05D002389 2.3e-17 94.0 370 28.9
AL1G22530 Arabidopsis lyrata HOM05D007301 ORTHO05D002389 1.2e-16 91.7 278 30.9
Nn2g15924 Nelumbo nucifera HOM05D007301 ORTHO05D002389 1.2e-16 91.7 244 32.0
FAN25G1308 Fragaria x ananassa HOM05D007301 ORTHO05D002389 2.6e-16 90.5 130 41.5
AT1G11440 Arabidopsis thaliana HOM05D007301 ORTHO05D002389 7.5e-16 89.0 287 31.0
CARHR011720 Cardamine hirsuta HOM05D007301 ORTHO05D002389 9.7e-16 88.6 321 29.9
FAN25G2682 Fragaria x ananassa HOM05D007301 ORTHO05D002389 1.3e-15 88.2 124 44.4
BraA06t24007Z Brassica rapa HOM05D007301 ORTHO05D002389 1.1e-14 85.1 353 27.2
Migut.M01248 Erythranthe guttata HOM05D007301 ORTHO05D002389 1.8e-14 84.3 323 27.9
THA.LOC104809531 Tarenaya hassleriana HOM05D007301 ORTHO05D002389 5.3e-14 82.8 316 28.8
Carub.0001s1106 Capsella rubella HOM05D007301 ORTHO05D002389 7.0e-14 82.4 367 27.0
EL10As6g23651 Beta vulgaris HOM05D007301 ORTHO05D002389 1.2e-13 81.6 97 47.4
PSO832G1637 Papaver somniferum HOM05D007301 ORTHO05D002389 1.2e-13 81.6 213 31.9
unitig_27.g25344 Utricularia gibba HOM05D007301 ORTHO05D002389 2.7e-13 80.5 299 29.4
A06p08080 Brassica napus HOM05D007301 ORTHO05D002389 3.5e-13 80.1 348 27.9
Sp1g10080 Schrenkiella parvula HOM05D007301 ORTHO05D002389 3.5e-13 80.1 277 29.6
C05p09660 Brassica napus HOM05D007301 ORTHO05D002389 1.3e-12 78.2 369 28.5
BolC5t29707H Brassica oleracea HOM05D007301 ORTHO05D002389 1.3e-12 78.2 369 28.5
Ah.14g088560 Amaranthus hybridus HOM05D007301 ORTHO05D002389 5.5e-11 72.8 111 36.9
MBI13_g03785_MAGBIO Magnolia biondii HOM05D007301 ORTHO05D002389 1.2e-10 71.6 225 32.4
PSO063G0660 Papaver somniferum HOM05D007301 ORTHO05D002389 8.0e-10 68.9 213 31.0
BcaC05g25022 Brassica carinata HOM05D007301 ORTHO05D002389 1.4e-09 68.2 361 26.9
Aa31LG1G3280 Aethionema arabicum HOM05D007301 ORTHO05D002389 4.0e-09 66.6 327 25.7
Ah.09g236990 Amaranthus hybridus HOM05D007301 ORTHO05D002389 4.0e-09 66.6 371 26.1
Actinidia26967 Actinidia chinensis HOM05D007301 ORTHO05D002389 9.8e-08 62.0 75 48.0
Lsat_1_v5_gn_1_123940 Lactuca sativa HOM05D007301 ORTHO05D002389 8.3e-07 58.9 285 23.9
Potri.004G029500 Populus trichocarpa HOM05D007301 ORTHO05D002389 3.1e-06 57.0 214 29.4


User provided reference genes

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