Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 7.3e-104 380.6 193 100.0
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 3.9e-73 278.5 187 79.1
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 9.7e-72 273.9 187 78.1
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 4.8e-71 271.6 187 77.5
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.1e-64 250.4 190 74.7
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 1.9e-59 233.0 188 69.1
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 3.0e-57 225.7 206 66.5
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 3.0e-57 225.7 194 66.0
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 8.8e-57 224.2 187 66.3
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 3.1e-54 215.7 188 65.4
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 4.1e-54 215.3 198 64.6
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 5.3e-54 214.9 196 63.8
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 7.0e-54 214.5 205 64.9
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 1.2e-53 213.8 187 65.8
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 7.7e-53 211.1 194 64.4
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 7.7e-53 211.1 191 65.4
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 2.2e-52 209.5 202 60.9
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 4.2e-51 205.3 196 60.2
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.2e-50 203.8 198 62.6
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 1.6e-50 203.4 203 62.1
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 2.1e-50 203.0 193 60.6
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 4.7e-50 201.8 203 61.6
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 4.7e-50 201.8 203 60.1
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 6.8e-49 198.0 197 62.9
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 5.7e-48 194.9 197 59.9
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 1.7e-47 193.4 188 60.1
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.1e-46 190.7 197 59.9
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.1e-46 190.7 196 59.7
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.4e-46 190.3 192 60.9
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 4.1e-46 188.7 195 58.5
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.5e-45 185.7 192 60.4
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 7.7e-45 184.5 202 58.9
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.3e-44 183.7 194 58.2
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 1.3e-44 183.7 192 58.9
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.7e-44 183.3 200 58.0
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 1.1e-43 180.6 207 55.1
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.1e-43 180.6 195 58.5
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 5.5e-43 178.3 197 57.9
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 5.5e-43 178.3 189 58.7
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 7.2e-43 177.9 189 60.3
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 1.2e-42 177.2 199 57.8
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 3.6e-42 175.6 189 56.1
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 4.7e-42 175.3 184 58.7
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 4.0e-41 172.2 191 58.1
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.2e-40 170.6 205 56.1
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 3.4e-40 169.1 195 54.4
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 4.9e-39 165.2 192 56.2
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 2.4e-38 162.9 195 56.9
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 4.1e-38 162.2 194 54.6
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 5.4e-38 161.8 187 54.5
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 3.5e-37 159.1 193 50.8
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 7.7e-37 157.9 187 53.5
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 1.3e-36 157.1 175 57.7
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 6.6e-36 154.8 197 52.3
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.1e-35 154.1 202 51.5
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 4.2e-35 152.1 185 51.9
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 2.8e-34 149.4 188 51.6
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 4.7e-34 148.7 180 53.9
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 4.7e-34 148.7 190 51.6
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 6.1e-34 148.3 191 52.9
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 6.1e-34 148.3 184 52.2
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 6.1e-34 148.3 187 50.3
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 8.0e-34 147.9 182 51.1
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.0e-33 147.5 194 50.5
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.0e-33 147.5 194 50.5
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 3.0e-33 146.0 194 50.5
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 6.8e-33 144.8 195 50.8
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 8.9e-33 144.4 164 57.3
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 2.0e-32 143.3 140 62.1
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.4e-32 142.5 194 51.5
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 3.4e-32 142.5 182 53.8
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 3.4e-32 142.5 200 49.5
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.3e-31 140.6 162 54.9
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 1.3e-31 140.6 178 53.4
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 1.7e-31 140.2 179 54.2
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 4.9e-31 138.7 192 49.0
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 4.9e-31 138.7 213 46.9
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 1.1e-30 137.5 196 45.9
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.4e-30 137.1 183 48.1
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 1.8e-30 136.7 186 53.8
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 1.8e-30 136.7 194 48.5
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 2.4e-30 136.3 192 50.0
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 3.2e-30 136.0 196 50.5
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 4.1e-30 135.6 199 47.2
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 1.0e-28 131.0 173 51.4
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 2.3e-28 129.8 169 52.1
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 5.0e-28 128.6 198 49.5
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 1.9e-27 126.7 192 47.4
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 4.3e-27 125.6 189 48.1
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 1.6e-26 123.6 161 50.9
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 2.8e-26 122.9 203 44.3
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 2.8e-26 122.9 198 48.0
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 6.1e-26 121.7 170 45.3
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 1.4e-25 120.6 214 43.5
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.4e-25 120.6 184 45.1
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 1.8e-25 120.2 201 43.8
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 4.0e-25 119.0 171 45.6
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 4.0e-25 119.0 204 46.1
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 8.9e-25 117.9 168 47.6
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 2.6e-24 116.3 185 45.9
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 3.4e-24 115.9 186 48.9
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 1.3e-23 114.0 196 40.8
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 1.7e-23 113.6 200 42.0
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 3.7e-23 112.5 166 50.0
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 1.2e-21 107.5 166 47.6
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 2.7e-21 106.3 170 45.9
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 4.6e-21 105.5 187 40.1
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 6.0e-21 105.1 193 45.6
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 1.0e-20 104.4 195 42.6
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 1.0e-20 104.4 195 42.6
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 1.3e-20 104.0 192 42.7
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 1.7e-20 103.6 182 44.0
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 3.9e-20 102.4 182 43.4
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 3.9e-20 102.4 181 43.6
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 3.9e-20 102.4 192 42.7
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 8.6e-20 101.3 187 42.8
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 8.6e-20 101.3 183 42.6
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 1.1e-19 100.9 174 40.8
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 1.9e-19 100.1 181 43.6
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 1.9e-19 100.1 181 43.6
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 1.9e-19 100.1 181 43.6
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 3.3e-19 99.4 180 45.0
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 5.6e-19 98.6 181 43.1
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 7.3e-19 98.2 182 42.3
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 1.2e-18 97.4 171 42.7
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 1.6e-18 97.1 91 61.5
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 2.1e-18 96.7 203 40.9
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 2.1e-18 96.7 130 51.5
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 2.1e-18 96.7 184 38.6
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 6.2e-18 95.1 184 41.8
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 4.0e-17 92.4 190 39.5
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 8.9e-17 91.3 180 38.9
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 1.2e-16 90.9 137 49.6
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 1.5e-16 90.5 192 43.8
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 1.5e-16 90.5 183 44.8
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 2.0e-16 90.1 189 40.2
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 5.8e-16 88.6 204 35.8
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 8.3e-15 84.7 195 41.0
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 1.9e-14 83.6 188 40.4
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 4.1e-14 82.4 176 40.3
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 2.1e-13 80.1 189 34.4
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 3.5e-13 79.3 178 39.3
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 4.6e-13 79.0 173 42.2
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 6.0e-13 78.6 86 55.8
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.3e-12 77.4 191 38.2
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 3.9e-12 75.9 170 39.4
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 3.9e-12 75.9 137 46.0
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 5.1e-12 75.5 182 37.4
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 5.1e-12 75.5 240 34.2
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 1.1e-11 74.3 217 33.6
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 4.7e-10 68.9 190 30.0
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 6.2e-10 68.6 210 31.4
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 8.1e-10 68.2 173 38.7
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 2.3e-09 66.6 76 53.9
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 4.0e-09 65.9 106 45.3
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 8.9e-09 64.7 56 53.6
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 8.9e-09 64.7 58 58.6
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 2.6e-08 63.2 170 40.6
TPR.G22022 Trifolium pratense HOM05D004361 ORTHO05D004706 5.8e-08 62.0 100 42.0
Gohir.A05G312801 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.6e-08 61.6 55 61.8
Gohir.A12G262800 Gossypium hirsutum HOM05D002183 ORTHO05D002169 1.3e-07 60.8 56 58.9
Zm00001eb369720 Zea mays HOM05D033938 ORTHO05D004706 4.9e-07 58.9 51 56.9
Gohir.A05G327000 Gossypium hirsutum HOM05D002183 ORTHO05D004706 1.9e-06 57.0 41 65.9
Os01g0787400 Oryza sativa ssp. japonica HOM05D033938 ORTHO05D004706 3.2e-06 56.2 51 54.9


User provided reference genes

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