Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 1.6e-222 775.8 389 100.0
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 8.2e-179 630.6 393 81.7
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 1.2e-169 600.1 421 74.1
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 5.0e-168 594.7 421 73.2
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 6.5e-168 594.3 395 77.5
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 8.5e-168 594.0 396 76.8
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 1.9e-167 592.8 411 75.2
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 5.5e-167 591.3 381 78.5
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 2.1e-166 589.3 407 74.4
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 1.8e-165 586.3 381 78.0
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 2.3e-165 585.9 394 75.4
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 8.8e-165 583.9 391 76.7
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 2.0e-164 582.8 400 74.0
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 2.6e-164 582.4 397 75.8
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 9.7e-164 580.5 383 77.5
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 3.7e-163 578.6 382 77.0
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 6.3e-163 577.8 407 71.7
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.6e-161 573.2 402 72.6
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 1.6e-161 573.2 402 72.6
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 3.5e-161 572.0 396 74.0
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 2.9e-160 568.9 408 71.1
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.1e-159 567.0 385 75.1
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 4.7e-158 561.6 404 71.3
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 6.1e-158 561.2 406 72.7
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 6.8e-157 557.8 384 71.6
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 6.8e-157 557.8 403 71.0
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 8.8e-157 557.4 395 72.9
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 3.4e-156 555.4 414 71.7
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 5.7e-156 554.7 397 71.3
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 3.7e-155 552.0 376 75.0
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 3.7e-155 552.0 383 74.9
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 8.3e-155 550.8 405 71.9
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 5.4e-154 548.1 410 69.5
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 9.1e-154 547.4 400 71.0
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 9.1e-154 547.4 438 66.4
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 2.0e-153 546.2 392 73.7
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 5.9e-153 544.7 408 69.6
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.1e-151 540.4 372 72.3
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 5.5e-151 538.1 406 67.5
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 1.2e-150 537.0 397 70.0
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 3.6e-150 535.4 389 70.4
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 6.8e-149 531.2 395 69.9
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.5e-148 530.0 374 72.7
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 9.8e-148 527.3 408 66.9
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 9.8e-148 527.3 382 70.7
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 4.9e-147 525.0 403 69.0
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 8.3e-147 524.2 401 67.3
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 1.4e-146 523.5 406 67.5
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 1.8e-146 523.1 380 71.1
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 4.1e-146 521.9 380 70.0
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 5.4e-146 521.5 373 70.0
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 9.2e-146 520.8 377 71.4
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 1.2e-145 520.4 380 68.2
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 1.6e-145 520.0 362 72.9
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 5.9e-145 518.1 373 69.4
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 7.8e-145 517.7 384 68.2
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 5.0e-144 515.0 359 72.1
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 1.5e-143 513.5 383 68.7
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 1.9e-143 513.1 366 71.6
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 2.5e-143 512.7 387 67.7
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 2.5e-143 512.7 286 86.0
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.3e-143 512.3 382 68.6
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.3e-143 512.3 382 68.6
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 7.3e-143 511.1 385 68.6
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 2.1e-142 509.6 358 70.7
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 2.8e-142 509.2 382 68.1
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 6.1e-142 508.1 417 63.5
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 5.2e-141 505.0 286 84.3
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 1.2e-140 503.8 359 69.9
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 3.4e-140 502.3 387 67.2
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 3.4e-140 502.3 397 65.0
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 5.8e-140 501.5 372 66.4
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 5.8e-140 501.5 382 68.6
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 1.3e-139 500.4 349 71.9
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 3.7e-139 498.8 388 66.2
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 7.0e-138 494.6 389 64.8
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 1.6e-137 493.4 286 82.5
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 1.6e-137 493.4 422 62.8
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 3.0e-136 489.2 302 78.1
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 6.6e-136 488.0 340 72.6
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.6e-134 483.4 366 66.7
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 3.6e-134 482.3 369 65.6
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 3.1e-133 479.2 384 64.8
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 3.1e-133 479.2 376 64.1
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 2.0e-132 476.5 389 63.5
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 2.0e-132 476.5 395 62.0
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 2.6e-132 476.1 383 62.7
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 4.4e-132 475.3 398 61.8
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 3.7e-131 472.2 394 64.5
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 4.9e-131 471.9 398 61.3
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 1.4e-130 470.3 396 61.4
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 1.9e-130 469.9 392 64.3
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 5.4e-130 468.4 393 62.3
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.2e-129 467.2 403 62.8
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.7e-129 466.1 398 60.8
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 3.5e-129 465.7 397 61.7
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.0e-128 464.2 379 62.8
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.7e-128 463.4 395 60.8
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 2.3e-128 463.0 384 62.8
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 1.5e-127 460.3 387 64.9
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 1.9e-127 459.9 385 62.3
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.3e-127 459.1 359 66.3
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.6e-126 456.8 396 61.4
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 3.6e-126 455.7 388 61.3
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 4.7e-126 455.3 391 61.6
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 4.0e-125 452.2 391 61.6
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 8.9e-125 451.1 391 61.4
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 2.0e-124 449.9 286 78.3
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 3.4e-124 449.1 375 62.4
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 2.2e-123 446.4 386 62.7
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 4.9e-123 445.3 384 62.5
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 6.4e-123 444.9 379 61.5
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.4e-122 443.0 381 61.9
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 7.1e-122 441.4 365 62.2
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 1.2e-121 440.7 378 62.4
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 2.7e-121 439.5 382 62.0
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 2.7e-121 439.5 379 57.0
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.7e-121 439.5 346 65.3
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 1.0e-120 437.6 382 61.8
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 1.3e-120 437.2 363 63.6
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.3e-120 437.2 338 66.3
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 2.3e-120 436.4 382 61.8
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 2.5e-119 433.0 375 61.9
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.1e-118 429.9 493 48.9
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 1.5e-116 423.7 377 60.5
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 4.4e-116 422.2 381 59.6
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 4.4e-116 422.2 381 59.6
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 4.9e-115 418.7 383 59.3
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 4.9e-115 418.7 383 59.3
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 4.9e-115 418.7 290 65.9
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 8.4e-115 417.9 381 59.1
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 4.2e-114 415.6 333 62.5
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 3.3e-111 406.0 286 72.4
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 3.6e-110 402.5 295 70.2
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 1.5e-108 397.1 368 59.0
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 2.7e-105 386.3 364 54.7
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 5.8e-100 368.6 387 51.4
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 8.1e-94 348.2 250 70.0
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 6.2e-86 322.0 186 81.7
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 1.8e-61 240.7 298 43.6
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 6.5e-59 232.3 293 44.7
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 1.0e-56 224.9 171 66.7
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 1.3e-54 218.0 160 68.1
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 7.0e-53 212.2 257 47.9
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 9.1e-45 185.3 110 83.6
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 4.5e-44 183.0 247 46.6
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 2.3e-32 144.1 189 44.4
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 3.9e-27 126.7 173 46.2
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 2.5e-26 124.0 104 61.5
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 8.0e-25 119.0 71 77.5
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 5.2e-24 116.3 132 50.8
QL04p046239 Quercus lobata HOM05D004835 ORTHO05D000004 5.4e-21 106.3 55 98.2
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.7e-19 101.3 285 29.5
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 8.9e-16 89.0 56 69.6


User provided reference genes

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