Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 4.5e-189 664.5 341 100.0
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 2.4e-150 535.8 337 78.0
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 7.8e-149 530.8 333 77.8
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 3.3e-139 498.8 316 75.6
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 2.8e-138 495.7 337 71.5
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 4.7e-138 495.0 332 73.2
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 1.7e-135 486.5 340 71.2
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 2.2e-135 486.1 337 70.3
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 2.9e-135 485.7 337 70.6
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 2.9e-135 485.7 344 69.2
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 9.2e-134 480.7 341 70.1
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 3.5e-133 478.8 342 68.7
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.7e-132 476.5 346 67.3
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 3.9e-132 475.3 315 73.7
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 5.1e-132 474.9 334 69.5
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 1.9e-131 473.0 341 69.8
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 4.3e-131 471.9 335 70.4
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 9.5e-131 470.7 345 69.6
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 9.5e-131 470.7 342 67.3
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 2.8e-130 469.2 315 71.4
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 6.2e-130 468.0 340 68.2
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 1.1e-129 467.2 331 68.9
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 2.3e-129 466.1 333 67.3
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 6.8e-129 464.5 352 65.6
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 8.9e-129 464.2 339 68.1
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 1.2e-128 463.8 338 68.0
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 1.5e-128 463.4 330 68.5
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.0e-128 463.0 336 69.0
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 3.4e-128 462.2 340 66.5
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 1.3e-127 460.3 338 68.0
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 2.9e-127 459.1 316 70.6
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 1.1e-126 457.2 344 65.7
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 4.1e-126 455.3 319 72.7
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 4.1e-126 455.3 346 64.2
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 7.1e-126 454.5 346 66.5
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 1.2e-125 453.8 334 66.5
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.5e-125 452.2 340 66.8
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 3.5e-125 452.2 341 67.4
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 4.6e-125 451.8 314 68.5
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 7.8e-125 451.1 330 67.3
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 1.3e-124 450.3 346 66.2
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 1.7e-124 449.9 330 66.7
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 3.9e-124 448.7 332 67.8
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 3.9e-124 448.7 350 65.1
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 3.9e-124 448.7 350 65.1
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 1.1e-123 447.2 344 64.2
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.5e-123 446.8 330 67.6
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 1.9e-123 446.4 342 64.9
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 3.3e-123 445.7 318 68.2
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 4.3e-123 445.3 314 68.5
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 4.3e-123 445.3 314 69.1
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 7.3e-123 444.5 314 68.2
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 2.8e-122 442.6 313 69.6
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 2.8e-122 442.6 313 69.6
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 2.8e-122 442.6 313 69.6
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 3.6e-122 442.2 342 64.6
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 1.1e-121 440.7 342 63.5
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 1.8e-121 439.9 332 65.7
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 5.2e-121 438.3 343 63.6
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 2.0e-120 436.4 335 64.5
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 2.6e-120 436.0 341 65.4
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 2.6e-120 436.0 341 65.4
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 3.4e-120 435.6 341 65.4
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 3.4e-120 435.6 314 68.8
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 3.4e-120 435.6 338 66.3
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 4.4e-120 435.3 337 65.9
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 4.4e-120 435.3 337 65.9
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 9.9e-120 434.1 342 65.2
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 9.9e-120 434.1 340 66.2
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.7e-119 433.3 333 64.3
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 3.8e-119 432.2 342 64.3
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 6.4e-119 431.4 340 62.4
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.1e-118 430.6 338 62.7
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 1.6e-117 426.8 332 61.7
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 2.7e-117 426.0 336 64.3
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 6.0e-117 424.9 336 63.7
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.0e-116 424.1 338 63.0
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 1.9e-115 419.9 313 65.2
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 5.6e-115 418.3 339 62.2
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 5.6e-115 418.3 344 61.6
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 7.3e-115 417.9 343 61.8
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 1.3e-114 417.2 316 64.2
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 6.2e-114 414.8 339 60.5
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 5.3e-113 411.8 343 60.3
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 9.0e-113 411.0 343 60.9
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 4.4e-112 408.7 341 60.1
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 9.9e-112 407.5 338 58.9
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 2.9e-111 406.0 341 59.5
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 1.1e-110 404.1 332 63.3
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 3.2e-110 402.5 338 57.7
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.7e-108 396.7 317 59.3
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.7e-108 396.7 317 59.3
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 1.5e-107 393.7 270 71.1
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 1.9e-107 393.3 316 59.8
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.8e-106 389.4 336 60.4
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 2.8e-106 389.4 315 60.0
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.2e-104 384.0 325 58.5
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.2e-104 384.0 338 60.4
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 2.0e-104 383.3 250 74.4
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 2.6e-104 382.9 279 67.4
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 1.3e-103 380.6 254 70.9
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 1.7e-103 380.2 332 57.8
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 1.5e-99 367.1 331 55.6
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 3.3e-99 365.9 340 54.7
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 1.3e-98 364.0 313 58.8
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 6.2e-98 361.7 331 54.1
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 6.2e-98 361.7 344 55.2
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 1.8e-97 360.1 341 53.1
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 5.3e-97 358.6 316 61.1
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 1.5e-96 357.1 341 54.0
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 2.6e-96 356.3 307 58.3
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 3.4e-96 355.9 327 54.4
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 5.8e-96 355.1 271 66.1
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 1.7e-95 353.6 334 56.6
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.5e-94 349.7 306 58.8
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 4.2e-94 349.0 338 52.7
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 7.9e-93 344.7 323 54.5
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 1.3e-92 344.0 403 49.1
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 1.8e-92 343.6 337 49.6
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 5.1e-92 342.0 325 56.0
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 6.7e-92 341.7 325 54.5
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 6.3e-90 335.1 328 54.3
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.1e-89 334.3 332 48.8
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.1e-89 334.3 335 51.3
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 2.4e-89 333.2 335 51.0
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 9.0e-89 331.3 335 51.0
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.2e-88 330.9 316 53.2
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 3.4e-88 329.3 335 51.3
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 4.5e-88 328.9 330 49.1
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 2.9e-87 326.2 329 51.1
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 1.4e-86 323.9 344 50.0
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 7.9e-85 318.2 332 50.0
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 1.8e-84 317.0 270 60.7
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 1.1e-83 314.3 344 47.7
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 1.9e-83 313.5 342 46.8
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 2.5e-83 313.2 343 47.2
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 9.7e-83 311.2 342 46.8
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.2e-82 310.1 250 58.8
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 2.8e-82 309.7 333 47.1
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 3.7e-82 309.3 313 47.9
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 9.0e-81 304.7 334 47.6
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 1.0e-79 301.2 344 45.9
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 1.0e-79 301.2 344 45.9
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 1.3e-79 300.8 270 57.0
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.1e-78 297.7 178 75.8
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 1.4e-78 297.4 189 71.4
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 1.4e-76 290.8 189 71.4
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 5.1e-76 288.9 336 45.5
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 2.6e-75 286.6 244 60.2
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 4.4e-75 285.8 189 70.4
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.8e-71 272.7 190 69.5
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.2e-69 267.7 189 64.6
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 3.1e-65 253.1 217 59.9
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 3.5e-64 249.6 339 43.4
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 2.2e-63 246.9 183 66.7
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 6.7e-60 235.3 190 57.9
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 5.7e-59 232.3 184 58.7
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 2.8e-58 229.9 235 50.6
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 3.2e-54 216.5 224 53.6
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 7.2e-54 215.3 313 38.7
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 3.6e-53 213.0 155 69.0
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 1.0e-47 194.9 330 38.2
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 1.8e-36 157.5 164 53.0
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 5.7e-35 152.5 172 44.8
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 1.3e-34 151.4 104 74.0
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 2.9e-34 150.2 81 87.7
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 6.4e-34 149.1 161 53.4
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 3.2e-33 146.7 80 87.5
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 1.5e-30 137.9 92 69.6
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 1.6e-29 134.4 89 66.3
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 2.8e-29 133.7 95 67.4
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 4.9e-26 122.9 310 28.7
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 1.4e-25 121.3 75 76.0
QL03p066087 Quercus lobata HOM05D003755 ORTHO05D004385 4.6e-24 116.3 81 80.2
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 2.1e-21 107.5 76 63.2
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 2.0e-19 100.9 75 70.7
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 2.3e-15 87.4 57 73.7
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 5.6e-14 82.8 74 60.8
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 1.2e-13 81.6 57 66.7
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 1.4e-12 78.2 68 58.8
AagrBONN_evm.TU.Sc2ySwM_228.3672 Anthoceros agrestis HOM05D003755 ORTHO05D004385 3.0e-07 60.5 69 46.4


User provided reference genes

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