Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 2662.9 1491 100.0
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1933.3 1531 70.0
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1836.2 1566 66.9
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1576.6 1553 58.3
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1545.0 1496 59.9
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1491.1 1520 55.8
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1484.2 1494 58.0
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1483.4 1537 60.2
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1474.1 1509 56.9
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1470.7 1531 57.3
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1464.5 1500 57.1
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1450.3 1567 53.2
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1438.3 1504 58.1
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1406.7 1481 56.2
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1406.0 1546 53.0
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1400.6 1510 56.5
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1396.3 1527 55.9
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1396.3 1572 54.6
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1395.2 1502 52.3
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1374.0 1476 55.1
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1362.1 1532 52.4
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1356.3 1536 52.6
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 1355.9 1536 54.0
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 0.0e+00 1353.6 1544 51.8
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1350.5 1592 50.7
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1347.0 1496 52.6
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1344.7 1505 55.1
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1330.9 1563 50.4
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1327.4 1496 52.3
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1324.7 1520 52.0
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1317.0 1504 53.1
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 0.0e+00 1316.2 1492 51.6
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 0.0e+00 1313.5 1617 51.8
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 0.0e+00 1312.4 1509 53.3
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 1305.8 1473 51.6
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1302.3 1496 50.7
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1294.6 1503 50.0
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1293.9 1504 49.7
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 0.0e+00 1290.4 1512 51.7
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1275.0 1507 50.0
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1275.0 1508 50.0
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1266.9 1588 51.4
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1266.9 1481 50.4
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1266.5 1797 47.4
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1244.6 1517 48.3
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1244.2 1522 51.8
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1216.4 1519 47.7
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1211.8 1510 50.4
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1210.7 1510 50.3
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1200.3 1508 47.7
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 0.0e+00 1194.5 1500 50.1
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1191.8 1535 46.9
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 0.0e+00 1182.5 1510 50.5
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1181.4 1572 46.1
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 0.0e+00 1181.0 1499 51.0
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 0.0e+00 1180.6 1514 50.8
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 0.0e+00 1178.7 1510 48.5
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1170.2 1520 47.0
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1169.1 1522 46.5
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 0.0e+00 1161.0 768 77.7
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 0.0e+00 1157.9 1499 47.0
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 0.0e+00 1156.7 1515 49.8
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1156.4 1546 46.2
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 0.0e+00 1155.6 1496 46.7
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 0.0e+00 1152.5 1488 48.9
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 0.0e+00 1146.3 1537 46.3
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 0.0e+00 1146.0 1496 48.9
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 0.0e+00 1139.0 1496 46.3
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 0.0e+00 1133.2 1594 44.9
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 0.0e+00 1127.5 930 64.3
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1126.7 1482 46.2
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1118.6 1499 46.0
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 0.0e+00 1116.3 1583 45.9
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 0.0e+00 1115.5 1519 46.2
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 0.0e+00 1099.3 1516 45.4
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 0.0e+00 1083.2 1488 47.4
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1079.7 983 60.1
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 0.0e+00 1076.6 1488 47.2
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 4.5e-310 1068.5 1503 44.7
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 1.3e-309 1067.0 1497 44.7
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 6.5e-309 1064.7 1490 47.1
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 3.1e-303 1045.8 1309 49.7
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 2.6e-297 1026.2 1481 47.1
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 3.1e-295 1019.2 1545 42.1
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 4.9e-288 995.3 1362 49.0
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 1.6e-278 963.8 1337 44.7
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 9.5e-276 954.5 2361 34.8
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 9.8e-273 944.5 957 54.5
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 1.6e-270 937.2 1492 41.1
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 7.8e-254 881.7 1549 41.4
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.6e-249 866.7 1402 42.2
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 3.2e-239 833.2 1502 39.2
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 2.5e-220 770.4 1278 39.5
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 3.3e-220 770.0 794 55.2
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 5.3e-218 762.7 1485 35.6
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 2.3e-213 747.3 432 95.8
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.5e-196 691.4 1197 42.6
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 1.6e-182 644.8 545 62.4
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 4.7e-182 643.3 1557 32.2
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 4.0e-181 640.2 931 44.5
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 3.3e-175 620.5 1460 33.4
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 1.3e-168 598.6 660 48.3
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 5.4e-162 576.6 874 41.3
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.1e-151 542.3 1479 30.2
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.1e-143 515.8 426 66.2
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.9e-138 498.4 647 57.2
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 6.9e-125 453.4 530 48.3
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.3e-120 439.1 416 60.1
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 2.3e-112 411.8 1489 27.9
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 2.8e-110 404.8 1399 33.9
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 4.1e-101 374.4 504 42.9
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 6.9e-101 373.6 501 42.3
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 2.2e-99 368.6 329 62.0
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 1.4e-90 339.3 353 50.7
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 9.4e-90 336.7 1510 27.9
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 8.2e-86 323.6 290 53.4
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 4.7e-73 281.2 224 66.1
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.8e-72 279.3 240 64.2
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.7e-59 236.1 155 78.1
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.1e-56 225.3 905 26.7
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 4.9e-54 218.0 267 46.4
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 1.8e-48 199.5 239 49.8
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-46 193.4 514 28.4
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 3.7e-46 191.8 152 67.1
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 8.3e-46 190.7 232 43.5
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 1.7e-43 183.0 129 72.9
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 3.4e-39 168.7 154 61.0
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 1.9e-34 152.9 412 28.9
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.9e-34 152.9 465 28.6
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 1.3e-25 123.6 98 61.2
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.3e-25 123.6 359 29.5
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 8.1e-25 120.9 100 61.0
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 1.5e-23 116.7 181 38.7
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 1.9e-21 109.8 334 28.4
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 3.5e-20 105.5 75 65.3
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 4.5e-15 88.6 174 37.9
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 1.9e-13 83.2 253 28.1
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 6.0e-12 78.2 69 58.0
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 5.1e-11 75.1 69 63.8
vmacro07283 Vaccinium macrocarpon HOM05D000340 ORTHO05D012132 5.1e-11 75.1 168 54.2
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 9.6e-10 70.9 69 55.1
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 2.1e-09 69.7 53 64.2
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 1.1e-08 67.4 231 29.0
SHI35683 Sapria himalayana HOM05D000558 ORTHO05D001857 1.0e-06 60.8 163 30.1


User provided reference genes

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