Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 0.0e+00 1327.0 632 100.0
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 0.0e+00 1327.0 632 100.0
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 0.0e+00 1214.5 632 91.1
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 0.0e+00 1156.0 632 84.8
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 0.0e+00 1155.6 632 84.7
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 0.0e+00 1139.0 631 83.7
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 0.0e+00 1137.5 631 83.7
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 0.0e+00 1133.6 632 83.2
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 0.0e+00 1132.9 632 82.9
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 0.0e+00 1130.2 631 83.0
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 0.0e+00 1129.8 632 82.9
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 0.0e+00 1116.7 632 82.3
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 0.0e+00 1116.7 632 82.1
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 0.0e+00 1113.2 632 82.1
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 0.0e+00 1110.1 635 81.1
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 0.0e+00 1107.4 632 81.8
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 0.0e+00 1105.1 609 84.4
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 0.0e+00 1100.9 634 81.9
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 0.0e+00 1100.5 632 80.4
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 0.0e+00 1099.7 634 80.8
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 0.0e+00 1099.3 635 80.8
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 0.0e+00 1096.6 634 81.7
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 0.0e+00 1094.7 634 81.1
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 0.0e+00 1083.9 634 80.6
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 0.0e+00 1079.7 634 79.5
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 0.0e+00 1075.5 634 78.9
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 6.5e-311 1070.1 591 84.1
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 6.8e-308 1060.1 634 78.9
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 4.1e-305 1050.8 632 78.0
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 5.4e-305 1050.4 632 76.4
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 6.0e-304 1047.0 635 77.0
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 1.9e-302 1042.0 632 77.5
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 8.1e-301 1036.6 633 76.3
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 1.1e-300 1036.2 640 74.7
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 3.4e-299 1031.2 633 75.7
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 7.1e-297 1023.5 632 73.3
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 1.2e-293 1012.7 632 73.3
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 2.1e-293 1011.9 604 78.6
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 8.1e-293 1010.0 632 72.0
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 3.6e-285 984.6 635 73.1
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 8.4e-282 973.4 622 72.2
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 9.6e-278 959.9 632 70.7
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 6.7e-271 937.2 633 68.2
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 6.9e-260 900.6 643 66.3
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 1.4e-247 859.8 637 65.3
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 5.3e-244 847.8 633 64.0
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 9.1e-244 847.0 634 62.1
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 4.5e-243 844.7 533 74.7
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 2.4e-236 822.4 635 61.6
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 1.6e-235 819.7 637 61.4
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 3.5e-235 818.5 634 61.0
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 3.5e-235 818.5 634 61.0
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 3.5e-235 818.5 635 61.1
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 1.6e-232 809.7 545 69.0
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 6.1e-232 807.7 638 60.5
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 2.7e-224 782.3 636 59.6
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 1.0e-218 763.8 635 58.1
GSVIVG01002953001 Vitis vinifera HOM05D007895 ORTHO05D010017 2.1e-187 659.8 382 80.4
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 6.6e-186 654.8 638 50.9
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 1.5e-182 643.7 637 49.1
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 1.3e-178 630.6 640 49.4
CiPaw.09G090200 Carya illinoinensis HOM05D007895 ORTHO05D010017 2.2e-157 560.1 303 88.1
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 5.0e-133 479.2 739 37.2
CANSAT56G1122 Cannabis sativa HOM05D007895 ORTHO05D010017 2.2e-120 437.2 279 74.9
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 2.3e-114 417.2 241 78.4
MSTRG.7225 Avicennia marina HOM05D007895 ORTHO05D010017 2.6e-113 413.7 271 71.2
Cpa.g.sc189.18 Carica papaya HOM05D007895 ORTHO05D010017 1.7e-112 411.0 244 78.7
Cc00_g03030 Coffea canephora HOM05D007895 ORTHO05D010017 8.8e-106 388.7 243 72.4
AUR62021973 Chenopodium quinoa HOM05D007895 ORTHO05D010017 1.5e-105 387.9 271 66.4
Lalb_Chr15g0087521 Lupinus albus HOM05D007895 ORTHO05D010017 4.4e-105 386.3 224 80.8
AUR62012684 Chenopodium quinoa HOM05D007895 ORTHO05D010017 2.2e-104 384.0 271 65.7
Thhalv10026963m.g Eutrema salsugineum HOM05D007895 ORTHO05D010017 9.5e-100 368.6 256 67.6
CARHR228650 Cardamine hirsuta HOM05D007895 ORTHO05D010017 2.1e-99 367.5 286 62.9
AT4G21890 Arabidopsis thaliana HOM05D007895 ORTHO05D010017 6.8e-98 362.5 252 67.9
Sc05g0009090 Simmondsia chinensis HOM05D007895 ORTHO05D010017 1.8e-95 354.4 252 64.3
Aa31LG6G3880 Aethionema arabicum HOM05D007895 ORTHO05D010017 1.6e-91 341.3 255 63.5
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 9.9e-73 278.9 257 58.0
SalBow8G0130 Salvia bowleyana HOM05D007895 ORTHO05D010017 1.2e-54 218.8 170 61.2
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 1.1e-52 212.2 129 78.3
Rhsim13G0155300 Rhododendron simsii HOM05D007895 ORTHO05D013379 3.5e-46 190.7 191 55.5
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 2.6e-41 174.5 373 33.2
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 6.4e-40 169.9 382 31.7
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 8.4e-40 169.5 375 32.8
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 1.1e-39 169.1 381 32.0
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 2.5e-39 167.9 368 32.3
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 4.2e-39 167.2 377 30.0
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 4.2e-39 167.2 364 33.2
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 5.5e-39 166.8 385 30.6
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 7.1e-39 166.4 385 30.6
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 9.3e-39 166.0 374 29.7
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 1.2e-38 165.6 375 31.2
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 1.2e-38 165.6 375 31.2
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 1.6e-38 165.2 401 30.4
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 2.1e-38 164.9 372 30.4
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 2.1e-38 164.9 372 29.3
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 2.7e-38 164.5 372 32.3
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 7.9e-38 162.9 374 30.2
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 1.3e-37 162.2 369 32.0
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 1.3e-37 162.2 410 32.7
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 3.0e-37 161.0 378 30.7
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 3.9e-37 160.6 395 31.6
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 8.7e-37 159.5 389 31.1
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 1.5e-36 158.7 397 30.7
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 2.5e-36 157.9 374 31.0
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 2.5e-36 157.9 369 30.4
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 2.5e-36 157.9 361 32.1
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 3.3e-36 157.5 376 31.1
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 5.6e-36 156.8 366 31.4
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 7.4e-36 156.4 373 31.6
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 1.3e-35 155.6 372 30.1
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.6e-35 155.2 379 31.7
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.6e-35 155.2 391 29.7
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 2.8e-35 154.5 396 28.8
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 3.7e-35 154.1 375 30.7
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 3.7e-35 154.1 380 31.8
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 4.8e-35 153.7 371 31.3
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 4.8e-35 153.7 368 30.2
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 6.2e-35 153.3 374 29.7
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 6.2e-35 153.3 397 29.5
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 8.2e-35 152.9 373 31.4
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 8.2e-35 152.9 378 31.0
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 1.4e-34 152.1 371 30.5
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 1.8e-34 151.8 375 30.4
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 1.8e-34 151.8 373 30.6
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 1.8e-34 151.8 390 30.0
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 2.4e-34 151.4 365 31.5
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 2.4e-34 151.4 394 31.2
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 4.0e-34 150.6 387 30.5
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 4.0e-34 150.6 373 30.0
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 5.3e-34 150.2 398 29.9
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 5.3e-34 150.2 372 29.6
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 6.9e-34 149.8 398 29.9
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 9.0e-34 149.4 373 30.0
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 1.5e-33 148.7 366 30.3
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 1.5e-33 148.7 398 29.9
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 2.6e-33 147.9 373 30.3
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 5.8e-33 146.7 393 30.5
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 1.0e-32 146.0 367 31.1
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 4.9e-32 143.7 396 30.3
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 1.1e-31 142.5 390 29.2
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 1.9e-31 141.7 400 29.0
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 1.9e-31 141.7 361 30.7
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 1.9e-31 141.7 350 31.4
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 2.5e-31 141.4 374 29.1
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.2e-31 141.0 373 29.5
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 3.2e-31 141.0 417 28.8
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 5.5e-31 140.2 396 29.0
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 9.3e-31 139.4 390 30.0
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 9.3e-31 139.4 392 28.3
HPP92_001781 Vanilla planifolia HOM05D007895 ORTHO05D010017 9.3e-31 139.4 129 55.0
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 3.5e-30 137.5 354 31.4
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 3.5e-30 137.5 395 28.9
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 4.6e-30 137.1 395 28.1
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 7.9e-30 136.3 359 31.5
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.0e-29 136.0 371 31.3
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 2.3e-29 134.8 373 30.0
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 5.1e-29 133.7 398 28.6
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.5e-28 132.1 311 31.2
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 2.5e-28 131.3 372 29.0
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 3.3e-28 131.0 366 26.8
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 2.8e-27 127.9 348 29.3
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 2.8e-27 127.9 317 30.9
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 2.8e-27 127.9 310 32.3
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 3.7e-27 127.5 249 33.7
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 8.2e-27 126.3 240 32.9
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 8.2e-27 126.3 320 30.3
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 1.4e-26 125.6 361 28.8
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.8e-26 125.2 413 27.8
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 2.4e-26 124.8 354 29.1
CAN.G328.16 Capsicum annuum HOM05D007895 ORTHO05D010017 5.3e-26 123.6 152 44.7
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 9.0e-26 122.9 331 29.9
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 5.5e-23 113.6 379 27.4
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 4.6e-22 110.5 279 28.3
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 3.9e-21 107.5 254 31.1
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 8.8e-21 106.3 224 32.1
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 1.1e-20 105.9 311 28.6
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 3.7e-19 100.9 233 32.6
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 1.5e-17 95.5 249 30.1
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 3.4e-17 94.4 226 31.4
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.9e-15 88.6 159 36.5
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 2.1e-14 85.1 187 29.4
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 2.0e-12 78.6 216 26.4
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 3.1e-10 71.2 96 41.7
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 6.1e-06 57.0 113 29.2


User provided reference genes

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