Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 4.6e-71 271.2 143 100.0
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 1.4e-70 269.6 143 99.3
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 7.2e-56 220.7 143 84.6
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.1e-55 219.2 143 83.2
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 3.6e-55 218.4 143 83.9
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 3.6e-55 218.4 143 82.5
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.6e-55 218.4 143 83.2
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 4.7e-55 218.0 143 83.9
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.7e-55 218.0 143 82.5
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.0e-55 217.2 143 81.8
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 8.0e-55 217.2 143 81.8
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 8.0e-55 217.2 143 82.5
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.4e-54 216.5 143 82.5
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 2.3e-54 215.7 143 81.1
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 2.3e-54 215.7 143 81.8
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 3.0e-54 215.3 143 82.5
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 3.0e-54 215.3 143 81.8
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 3.0e-54 215.3 143 81.1
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 4.0e-54 214.9 143 82.5
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 5.2e-54 214.5 143 82.5
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 6.7e-54 214.2 143 82.5
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 6.7e-54 214.2 143 81.8
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 6.7e-54 214.2 143 81.8
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 8.8e-54 213.8 143 81.8
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 2.0e-53 212.6 143 81.1
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 2.6e-53 212.2 143 80.4
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 2.6e-53 212.2 143 80.4
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 4.4e-53 211.5 143 78.3
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 4.4e-53 211.5 143 81.8
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.7e-52 209.5 143 80.4
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 1.7e-52 209.5 143 79.7
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 1.7e-52 209.5 143 81.1
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.7e-52 209.5 143 80.4
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 6.3e-52 207.6 144 80.6
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 6.3e-52 207.6 143 78.3
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 8.2e-52 207.2 143 79.0
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 8.2e-52 207.2 145 80.7
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 1.4e-51 206.5 143 79.7
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 1.8e-51 206.1 143 76.9
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.8e-51 206.1 143 79.0
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 2.4e-51 205.7 143 79.0
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 4.1e-51 204.9 144 79.2
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 4.1e-51 204.9 143 77.6
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 7.0e-51 204.1 143 74.8
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 9.1e-51 203.8 143 79.0
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 9.1e-51 203.8 143 79.7
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 1.2e-50 203.4 143 78.3
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 1.2e-50 203.4 143 78.3
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 2.0e-50 202.6 143 78.3
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.7e-50 202.2 143 77.6
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.7e-50 202.2 143 76.9
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.5e-50 201.8 143 76.9
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 3.5e-50 201.8 142 76.8
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 4.5e-50 201.4 143 78.3
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 5.9e-50 201.1 143 78.3
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.3e-49 199.9 146 73.3
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 1.3e-49 199.9 143 77.6
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 2.2e-49 199.1 143 74.8
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 2.9e-49 198.7 143 75.5
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 3.8e-49 198.4 143 75.5
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 5.0e-49 198.0 143 76.2
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 5.0e-49 198.0 143 76.2
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 6.5e-49 197.6 143 74.1
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 6.5e-49 197.6 164 67.1
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 6.5e-49 197.6 143 73.4
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 1.1e-48 196.8 143 74.8
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 1.5e-48 196.4 143 74.8
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.5e-48 196.4 143 73.4
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 1.9e-48 196.1 143 74.8
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.9e-48 196.1 143 74.8
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 1.9e-48 196.1 143 75.5
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.9e-48 196.1 143 76.2
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 4.2e-48 194.9 143 76.9
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 7.2e-48 194.1 143 74.8
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 9.4e-48 193.7 143 75.5
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.2e-47 193.4 143 75.5
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.6e-47 193.0 147 73.5
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.6e-47 193.0 143 72.7
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.6e-47 193.0 143 74.1
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.6e-47 193.0 143 74.1
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 3.6e-47 191.8 143 74.8
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 4.7e-47 191.4 144 72.2
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 8.0e-47 190.7 144 72.9
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 1.8e-46 189.5 148 70.3
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 1.8e-46 189.5 152 70.4
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 1.8e-46 189.5 152 70.4
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 4.0e-46 188.3 159 66.0
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 1.5e-45 186.4 144 73.6
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 3.4e-45 185.3 168 62.5
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 4.4e-45 184.9 143 72.0
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.7e-45 184.5 147 69.4
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 7.5e-45 184.1 157 69.4
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.8e-44 182.2 143 70.6
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.8e-44 182.2 147 68.0
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 1.4e-43 179.9 143 68.5
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 1.4e-43 179.9 140 72.1
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 1.8e-43 179.5 151 66.9
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 4.1e-43 178.3 154 65.6
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 4.1e-43 178.3 154 65.6
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 4.1e-43 178.3 143 69.2
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 9.1e-43 177.2 178 60.1
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 2.0e-42 176.0 143 68.5
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 3.5e-42 175.3 176 58.0
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 7.7e-42 174.1 145 66.2
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 1.3e-41 173.3 147 66.0
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 1.3e-41 173.3 143 68.5
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 1.7e-41 172.9 118 83.1
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.5e-40 169.1 142 66.9
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 3.3e-40 168.7 140 67.1
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 4.2e-40 168.3 118 80.5
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.6e-39 166.4 142 64.8
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 5.2e-38 161.4 120 75.0
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 5.7e-37 157.9 123 74.0
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.1e-35 153.7 172 53.5
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 1.4e-35 153.3 142 57.0
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.1e-35 151.8 121 73.6
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 7.0e-35 151.0 118 72.0
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 1.0e-33 147.1 140 62.9
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 2.3e-33 146.0 142 62.0
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 2.3e-33 146.0 133 66.9
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 8.6e-33 144.1 140 63.6
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 2.5e-32 142.5 118 69.5
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 2.8e-31 139.0 142 54.9
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 4.0e-30 135.2 166 51.2
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 2.0e-29 132.9 114 67.5
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 5.8e-29 131.3 101 72.3
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 1.3e-28 130.2 131 58.8
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.2e-28 129.4 80 85.0
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 2.2e-28 129.4 155 54.2
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 4.9e-28 128.3 116 66.4
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.4e-27 124.8 79 82.3
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.2e-26 123.6 79 81.0
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.5e-26 122.1 76 86.8
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 6.0e-26 121.3 77 83.1
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.0e-26 121.3 79 81.0
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 2.3e-25 119.4 140 52.1
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 3.0e-25 119.0 120 61.7
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 1.9e-24 116.3 137 52.6
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 4.3e-24 115.2 124 56.5
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 3.6e-23 112.1 90 72.2
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 4.0e-22 108.6 90 71.1
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 6.8e-22 107.8 69 78.3
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 6.8e-22 107.8 68 82.4
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 2.4e-19 99.4 136 48.5
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.0e-18 94.7 63 81.0
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.3e-17 93.6 75 69.3
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 1.5e-16 90.1 107 55.1
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 1.1e-14 84.0 68 66.2
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.8e-14 83.2 56 76.8
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 5.2e-14 81.6 77 59.7
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 2.0e-13 79.7 75 61.3
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 4.4e-13 78.6 142 40.1
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 9.2e-11 70.9 73 60.3
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 9.2e-11 70.9 73 60.3
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 4.6e-10 68.6 46 71.7
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 3.1e-06 55.8 111 43.2
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 3.1e-06 55.8 111 43.2


User provided reference genes

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