Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 7.9e-71 270.4 143 100.0
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 1.8e-70 269.2 143 99.3
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 5.5e-56 221.1 143 85.3
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.6e-55 219.5 143 83.9
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 2.1e-55 219.2 143 83.2
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 2.7e-55 218.8 143 84.6
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 2.7e-55 218.8 143 84.6
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.7e-55 218.8 143 83.9
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.6e-55 218.4 143 83.2
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.7e-55 218.0 143 82.5
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.7e-55 218.0 143 82.5
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 6.1e-55 217.6 143 83.2
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.0e-54 216.9 143 83.2
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 1.4e-54 216.5 143 81.8
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.8e-54 216.1 143 83.2
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.8e-54 216.1 143 81.8
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 1.8e-54 216.1 143 82.5
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 2.3e-54 215.7 143 82.5
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 3.0e-54 215.3 143 83.2
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 4.0e-54 214.9 143 83.2
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 4.0e-54 214.9 143 82.5
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 4.0e-54 214.9 143 83.2
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 5.2e-54 214.5 143 82.5
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 5.2e-54 214.5 143 82.5
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 1.5e-53 213.0 143 81.1
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.5e-53 213.0 143 81.1
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.5e-53 213.0 143 81.8
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 2.6e-53 212.2 143 79.0
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 2.6e-53 212.2 143 82.5
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.3e-52 209.9 143 81.1
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 1.3e-52 209.9 143 80.4
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 1.3e-52 209.9 143 81.8
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.3e-52 209.9 143 81.1
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 3.7e-52 208.4 144 81.2
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 3.7e-52 208.4 143 79.0
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 4.8e-52 208.0 143 79.7
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 4.8e-52 208.0 145 81.4
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 1.1e-51 206.8 143 77.6
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 1.1e-51 206.8 143 80.4
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.1e-51 206.8 143 79.7
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 1.4e-51 206.5 143 79.7
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 2.4e-51 205.7 144 79.9
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 2.4e-51 205.7 143 78.3
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 4.1e-51 204.9 143 75.5
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 5.3e-51 204.5 143 80.4
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 7.0e-51 204.1 143 79.7
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 9.1e-51 203.8 143 79.0
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 9.1e-51 203.8 143 79.0
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 1.6e-50 203.0 143 79.0
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.6e-50 203.0 143 77.6
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.0e-50 202.6 143 77.6
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 2.0e-50 202.6 142 77.5
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.0e-50 202.6 143 78.3
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 2.7e-50 202.2 143 79.0
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 3.5e-50 201.8 143 79.0
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 7.7e-50 200.7 146 74.0
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 7.7e-50 200.7 143 78.3
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 1.7e-49 199.5 143 76.2
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 1.7e-49 199.5 143 75.5
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 2.2e-49 199.1 143 76.2
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 2.9e-49 198.7 143 76.9
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 2.9e-49 198.7 143 76.9
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 3.8e-49 198.4 143 74.8
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 3.8e-49 198.4 164 67.7
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 3.8e-49 198.4 143 74.1
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 6.5e-49 197.6 143 75.5
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 8.5e-49 197.2 143 74.1
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 1.1e-48 196.8 143 75.5
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.1e-48 196.8 143 75.5
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 1.1e-48 196.8 143 76.2
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.5e-48 196.4 143 76.9
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 2.5e-48 195.7 143 74.8
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 2.5e-48 195.7 143 77.6
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 4.2e-48 194.9 143 75.5
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 7.2e-48 194.1 143 76.2
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 9.4e-48 193.7 147 74.1
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 9.4e-48 193.7 143 73.4
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 9.4e-48 193.7 143 76.2
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.2e-47 193.4 143 74.8
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.2e-47 193.4 143 74.8
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 2.1e-47 192.6 143 75.5
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 2.7e-47 192.2 144 72.9
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 4.7e-47 191.4 144 73.6
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 1.0e-46 190.3 148 70.9
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 1.0e-46 190.3 152 71.1
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 1.0e-46 190.3 152 71.1
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 2.3e-46 189.1 159 66.7
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 8.8e-46 187.2 144 74.3
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 2.6e-45 185.7 168 63.1
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.4e-45 185.3 147 70.1
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 4.4e-45 184.9 157 70.1
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.7e-44 183.0 147 68.7
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 1.7e-44 183.0 143 71.3
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.2e-44 182.6 143 71.3
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 8.3e-44 180.6 143 69.2
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 1.1e-43 180.3 140 72.9
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 1.1e-43 180.3 151 67.5
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 2.4e-43 179.1 154 66.2
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 2.4e-43 179.1 154 66.2
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 3.1e-43 178.7 143 69.9
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 5.4e-43 177.9 178 60.7
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 1.6e-42 176.4 143 69.2
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 2.7e-42 175.6 176 58.5
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 4.5e-42 174.9 145 66.9
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 7.7e-42 174.1 147 66.7
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 7.7e-42 174.1 143 69.2
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 1.0e-41 173.7 118 83.9
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.5e-40 169.9 142 67.6
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 1.9e-40 169.5 140 67.9
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 3.3e-40 168.7 118 81.4
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.2e-39 166.8 142 65.5
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 4.0e-38 161.8 120 75.8
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 3.4e-37 158.7 123 74.8
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 8.3e-36 154.1 142 57.7
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 8.3e-36 154.1 172 54.1
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.4e-35 152.5 121 74.4
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 4.1e-35 151.8 118 72.9
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 5.9e-34 147.9 140 63.6
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 1.7e-33 146.4 133 67.7
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 2.9e-33 145.6 142 62.0
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 5.0e-33 144.8 140 64.3
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 1.9e-32 142.9 118 70.3
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 1.6e-31 139.8 142 55.6
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 2.3e-30 136.0 166 51.8
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 1.5e-29 133.3 114 68.4
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 3.4e-29 132.1 101 73.3
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 9.8e-29 130.6 131 59.5
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 1.3e-28 130.2 155 54.8
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.7e-28 129.8 80 85.0
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 4.9e-28 128.3 116 66.4
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.1e-27 125.2 79 82.3
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 9.2e-27 124.0 79 81.0
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.7e-26 122.5 76 86.8
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.5e-26 122.1 79 82.3
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.6e-26 121.7 77 83.1
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 2.3e-25 119.4 140 52.1
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 2.3e-25 119.4 120 62.5
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 1.1e-24 117.1 137 53.3
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.5e-24 115.9 124 57.3
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 2.1e-23 112.8 90 73.3
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 2.3e-22 109.4 90 72.2
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 4.0e-22 108.6 69 79.7
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 4.0e-22 108.6 68 83.8
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 1.9e-19 99.8 136 48.5
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.0e-18 94.7 63 81.0
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.7e-17 93.2 75 69.3
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 1.5e-16 90.1 107 55.1
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 6.2e-15 84.7 68 67.6
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.1e-14 84.0 56 78.6
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 6.8e-14 81.3 77 59.7
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 2.0e-13 79.7 75 61.3
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 5.8e-13 78.2 142 40.1
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 5.4e-11 71.6 73 61.6
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 5.4e-11 71.6 73 61.6
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 4.6e-10 68.6 46 71.7
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 4.0e-06 55.5 111 43.2
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 4.0e-06 55.5 111 43.2
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 8.9e-06 54.3 53 58.5
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 8.9e-06 54.3 51 60.8


User provided reference genes

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