Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p073215 Quercus lobata HOM05D007941 ORTHO05D010050 0.0e+00 1382.9 715 100.0
Cfa000224 Carpinus fangiana HOM05D007941 ORTHO05D010050 8.8e-304 1046.6 717 76.8
Haze_06797 Corylus avellana HOM05D007941 ORTHO05D010050 1.2e-303 1046.2 717 76.7
CiPaw.09G091700 Carya illinoinensis HOM05D007941 ORTHO05D010050 5.4e-245 851.3 639 72.8
Prupe.4G021200 Prunus persica HOM05D007941 ORTHO05D010050 3.3e-242 842.0 720 64.9
Thecc.06G220000 Theobroma cacao HOM05D007941 ORTHO05D010050 4.9e-238 828.2 716 62.7
Atru.chr10.2217 Acer truncatum HOM05D007941 ORTHO05D010050 4.9e-230 801.6 729 63.2
MD05G1345700 Malus domestica HOM05D007941 ORTHO05D010050 1.2e-228 797.0 721 61.3
Manes.16G007400 Manihot esculenta HOM05D007941 ORTHO05D010050 1.0e-227 793.9 716 62.3
RcHm_v2.0_Chr5g0003191 Rosa chinensis HOM05D007941 ORTHO05D010050 7.4e-226 787.7 721 61.6
Potri.004G015401 Populus trichocarpa HOM05D007941 ORTHO05D010050 2.4e-224 782.7 718 62.7
MD10G1321100 Malus domestica HOM05D007941 ORTHO05D010050 1.5e-223 780.0 721 60.7
TAR627G0026 Trochodendron aralioides HOM05D007941 ORTHO05D010050 2.5e-218 762.7 735 58.9
Ciclev10017854m.g Citrus clementina HOM05D007941 ORTHO05D010050 7.4e-218 761.1 721 60.1
Sabra04G0007600 Salix brachista HOM05D007941 ORTHO05D010050 7.4e-218 761.1 714 59.7
TWI38G0160 Tripterygium wilfordii HOM05D007941 ORTHO05D010050 1.6e-217 760.0 716 57.4
COL.COLO4_31770 Corchorus olitorius HOM05D007941 ORTHO05D010050 4.5e-215 751.9 703 59.5
Nn1g07127 Nelumbo nucifera HOM05D007941 ORTHO05D010050 9.4e-213 744.2 735 58.0
FAN25G1443 Fragaria x ananassa HOM05D007941 ORTHO05D010050 2.2e-209 733.0 726 57.3
Gorai.011G014100 Gossypium raimondii HOM05D007941 ORTHO05D010050 1.1e-208 730.7 701 58.1
Gohir.D10G012450 Gossypium hirsutum HOM05D007941 ORTHO05D010050 4.5e-207 725.3 701 57.8
FvH4_3g02100 Fragaria vesca HOM05D007941 ORTHO05D010050 8.5e-206 721.1 701 58.8
CANSAT56G1781 Cannabis sativa HOM05D007941 ORTHO05D010050 2.6e-202 709.5 734 57.8
Cpa.g.sc152.13 Carica papaya HOM05D007941 ORTHO05D010050 3.7e-201 705.7 721 57.7
Gohir.A10G012680 Gossypium hirsutum HOM05D007941 ORTHO05D010050 1.2e-199 700.7 720 56.9
Actinidia26916 Actinidia chinensis HOM05D007941 ORTHO05D010050 5.5e-197 691.8 719 57.4
Phvul.003G078500 Phaseolus vulgaris HOM05D007941 ORTHO05D010050 2.3e-195 686.4 702 55.6
VMungo1215G2837 Vigna mungo HOM05D007941 ORTHO05D010050 1.5e-189 667.2 702 54.7
Glyma.17G013700 Glycine max HOM05D007941 ORTHO05D010050 2.0e-186 656.8 704 54.3
Lj4g0020812 Lotus japonicus HOM05D007941 ORTHO05D010050 9.1e-184 647.9 706 53.5
PSO832G2769 Papaver somniferum HOM05D007941 ORTHO05D010050 9.5e-181 637.9 726 53.2
CsaV3_1G010790 Cucumis sativus L. HOM05D007941 ORTHO05D010050 2.8e-180 636.3 720 52.6
Sed0010816 Sechium edule HOM05D007941 ORTHO05D010050 1.7e-177 627.1 723 52.7
Lj1C1230T3 Lonicera japonica HOM05D007941 ORTHO05D010050 2.0e-175 620.2 596 58.9
ClCG03G004750 Citrullus lanatus HOM05D007941 ORTHO05D010050 9.5e-173 611.3 720 50.6
Cc09_g01710 Coffea canephora HOM05D007941 ORTHO05D010050 1.0e-171 607.8 720 50.7
CiPaw.09G091500 Carya illinoinensis HOM05D007941 ORTHO05D010050 8.6e-166 588.2 421 74.8
MELO3C002458.2 Cucumis melo HOM05D007941 ORTHO05D010050 2.8e-164 583.2 719 49.7
TPR.G37125 Trifolium pratense HOM05D007941 ORTHO05D010050 4.0e-163 579.3 810 45.3
Ca_21085_v3 Cicer arietinum L. HOM05D007941 ORTHO05D010050 3.7e-161 572.8 712 49.6
Dinv13890 Davidia involucrata HOM05D007941 ORTHO05D010050 2.4e-160 570.1 697 51.5
arahy.Tifrunner.gnm1.ann1.CCWF18 Arachis hypogaea HOM05D007941 ORTHO05D010050 3.5e-159 566.2 710 51.4
Nitab4.5_0012670g0020 Nicotiana tabacum HOM05D007941 ORTHO05D010050 3.5e-159 566.2 694 51.6
Solyc03g031660.1 Solanum lycopersicum HOM05D007941 ORTHO05D010050 7.3e-157 558.5 711 50.2
arahy.Tifrunner.gnm1.ann1.N60BY5 Arachis hypogaea HOM05D007941 ORTHO05D010050 3.1e-155 553.1 710 50.1
Sopen03g005520 Solanum pennellii HOM05D007941 ORTHO05D010050 4.4e-154 549.3 710 50.0
GSVIVG01012729001 Vitis vinifera HOM05D007941 ORTHO05D010050 4.9e-153 545.8 423 69.3
Peaxi162Scf00502g00214 Petunia axillaris HOM05D007941 ORTHO05D010050 9.5e-149 531.6 710 48.9
Nitab4.5_0007864g0050 Nicotiana tabacum HOM05D007941 ORTHO05D010050 2.8e-140 503.4 687 45.6
PGR004G0641 Punica granatum HOM05D007941 ORTHO05D010050 2.4e-139 500.4 692 46.8
Nn1g03523 Nelumbo nucifera HOM05D007941 ORTHO05D010050 5.8e-138 495.7 378 66.9
FAN21G2241 Fragaria x ananassa HOM05D007941 ORTHO05D010050 4.0e-123 446.4 361 64.8
CDE05G3547 Ceratophyllum demersum HOM05D007941 ORTHO05D010050 1.4e-120 438.0 514 50.6
EL10Ac8g20054 Beta vulgaris HOM05D007941 ORTHO05D010050 1.2e-119 434.9 656 45.6
AUR62012706 Chenopodium quinoa HOM05D007941 ORTHO05D010050 1.8e-118 431.0 577 47.0
Medtr4g132080 Medicago truncatula HOM05D007941 ORTHO05D010050 5.5e-112 409.5 480 50.8
Hma1.2p1_0749F.1_g212520 Hydrangea macrophylla HOM05D007941 ORTHO05D010050 3.8e-105 386.7 207 88.4
Hma1.2p1_0749F.1_g212543 Hydrangea macrophylla HOM05D007941 ORTHO05D010050 3.8e-105 386.7 207 88.4
Mapoly0124s0009 Marchantia polymorpha HOM05D007941 ORTHO05D010050 1.9e-104 384.4 702 40.7
Pp3c25_7620 Physcomitrium patens HOM05D007941 ORTHO05D010050 2.2e-97 360.9 656 40.5
MBI02_g07163_MAGBIO Magnolia biondii HOM05D007941 ORTHO05D010050 6.1e-71 273.1 714 32.4
Dinv20049 Davidia involucrata HOM05D007941 ORTHO05D010050 1.4e-59 235.3 212 62.3
Dinv20048 Davidia involucrata HOM05D007941 ORTHO05D010050 6.6e-57 226.5 263 55.5
Glyma.07G260250 Glycine max HOM05D007941 ORTHO05D010050 7.5e-53 213.0 365 41.6
SEGI_08485 Sequoiadendron giganteum HOM05D007941 ORTHO05D010050 4.6e-42 177.2 286 44.4
AUR62021948 Chenopodium quinoa HOM05D007941 ORTHO05D010050 3.0e-41 174.5 250 46.0
FAN21G0178 Fragaria x ananassa HOM05D007941 ORTHO05D010050 2.7e-34 151.4 163 54.0
AUR62021949 Chenopodium quinoa HOM05D007941 ORTHO05D010050 2.5e-32 144.8 333 37.5
ATR0794G083 Amborella trichopoda HOM05D007941 ORTHO05D010050 3.1e-30 137.9 271 40.2
SEGI_18097 Sequoiadendron giganteum HOM05D007941 ORTHO05D010050 1.5e-29 135.6 305 36.7
SEGI_17062 Sequoiadendron giganteum HOM05D007941 ORTHO05D010050 2.0e-29 135.2 66 89.4
PSO210G6634 Papaver somniferum HOM05D007941 ORTHO05D010050 3.2e-19 101.3 146 39.7
Nn1g03524 Nelumbo nucifera HOM05D007941 ORTHO05D010050 2.1e-18 98.6 110 59.1
ATR0794G095 Amborella trichopoda HOM05D007941 ORTHO05D010050 3.5e-18 97.8 212 39.2
PGSC0003DMG400005076 Solanum tuberosum HOM05D007941 ORTHO05D010050 4.0e-14 84.3 207 31.9
Medtr4g132090 Medicago truncatula HOM05D007941 ORTHO05D010050 2.2e-12 78.6 160 40.6
SEGI_12080 Sequoiadendron giganteum HOM05D007941 ORTHO05D010050 8.7e-09 66.6 143 30.8
Actinidia05517 Actinidia chinensis HOM05D007941 ORTHO05D010050 6.2e-07 60.5 85 43.5


User provided reference genes

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