Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 1.0e-78 296.6 139 100.0
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 2.9e-70 268.5 139 91.4
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 8.5e-70 266.9 139 89.2
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 3.5e-63 245.0 138 81.2
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 3.4e-58 228.4 139 74.1
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 3.4e-58 228.4 137 74.5
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 1.3e-57 226.5 139 72.7
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 2.2e-57 225.7 137 73.0
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 2.8e-57 225.3 137 74.5
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 2.8e-57 225.3 136 75.0
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 6.3e-57 224.2 137 73.7
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 1.4e-56 223.0 136 74.3
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 1.8e-56 222.6 139 73.4
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 2.4e-56 222.2 137 71.5
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 3.1e-56 221.9 139 72.7
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 4.1e-56 221.5 139 72.7
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 5.4e-56 221.1 139 72.7
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 9.1e-56 220.3 139 69.8
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.2e-55 219.9 136 72.1
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 2.7e-55 218.8 137 69.3
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 7.7e-55 217.2 137 70.8
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 1.0e-54 216.9 136 71.3
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 1.7e-54 216.1 136 71.3
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 1.7e-54 216.1 139 71.2
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.9e-54 215.3 139 69.1
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 3.8e-54 214.9 136 71.3
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 5.0e-54 214.5 136 69.9
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 1.5e-53 213.0 136 69.9
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 1.9e-53 212.6 136 69.9
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 1.9e-53 212.6 137 67.9
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 3.3e-53 211.8 136 70.6
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 5.6e-53 211.1 136 69.9
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 5.6e-53 211.1 137 67.2
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 1.2e-52 209.9 136 69.9
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 1.2e-52 209.9 136 67.6
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 1.2e-52 209.9 137 65.7
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 1.6e-52 209.5 137 69.3
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 2.1e-52 209.1 137 68.6
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 2.8e-52 208.8 136 68.4
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 3.6e-52 208.4 137 67.9
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 4.7e-52 208.0 136 66.9
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 4.7e-52 208.0 137 67.2
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 6.1e-52 207.6 137 65.0
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 1.4e-51 206.5 136 69.1
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 1.8e-51 206.1 136 67.6
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 3.0e-51 205.3 139 66.9
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 4.0e-51 204.9 136 65.4
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 4.0e-51 204.9 137 67.9
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 4.0e-51 204.9 136 66.9
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 4.0e-51 204.9 137 65.7
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 4.0e-51 204.9 137 66.4
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 5.2e-51 204.5 139 66.2
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 5.2e-51 204.5 139 66.2
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 6.8e-51 204.1 136 64.7
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 6.8e-51 204.1 137 65.7
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 6.8e-51 204.1 139 64.0
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 8.9e-51 203.8 139 64.7
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.0e-50 202.6 136 69.1
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 2.0e-50 202.6 137 66.4
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 2.0e-50 202.6 139 62.6
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 2.6e-50 202.2 137 65.7
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 2.6e-50 202.2 137 67.9
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 2.6e-50 202.2 137 67.2
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 4.4e-50 201.4 136 67.6
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 4.4e-50 201.4 139 65.5
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 9.8e-50 200.3 139 64.0
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 9.8e-50 200.3 131 67.9
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 2.2e-49 199.1 134 67.2
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 2.9e-49 198.7 137 67.2
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 2.9e-49 198.7 134 64.9
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 2.9e-49 198.7 137 65.0
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 3.7e-49 198.4 136 66.9
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 3.7e-49 198.4 136 65.4
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 4.9e-49 198.0 137 65.7
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 4.9e-49 198.0 139 64.0
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 4.9e-49 198.0 139 64.0
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 8.3e-49 197.2 139 64.0
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 1.1e-48 196.8 137 66.4
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 1.8e-48 196.1 136 64.0
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 4.1e-48 194.9 134 66.4
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 5.4e-48 194.5 137 63.5
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 7.0e-48 194.1 137 62.8
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 9.2e-48 193.7 137 62.8
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 1.2e-47 193.4 134 66.4
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 3.5e-47 191.8 134 66.4
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 3.5e-47 191.8 137 63.5
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 7.8e-47 190.7 137 63.5
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 1.0e-46 190.3 136 61.8
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 1.0e-46 190.3 134 65.7
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 1.3e-46 189.9 139 60.4
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 1.3e-46 189.9 129 66.7
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 1.3e-46 189.9 137 62.8
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 1.3e-46 189.9 136 63.2
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 1.7e-46 189.5 134 65.7
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 1.7e-46 189.5 134 65.7
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 1.7e-46 189.5 134 63.4
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 1.7e-46 189.5 139 59.0
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 2.3e-46 189.1 137 61.3
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 3.0e-46 188.7 136 65.4
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 6.6e-46 187.6 137 61.3
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 1.1e-45 186.8 136 62.5
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 1.1e-45 186.8 130 65.4
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 1.9e-45 186.0 137 61.3
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 2.5e-45 185.7 137 61.3
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 4.3e-45 184.9 137 60.6
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 5.6e-45 184.5 136 61.0
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 4.7e-44 181.4 137 61.3
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 8.0e-44 180.6 136 60.3
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 2.3e-43 179.1 108 73.1
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 8.9e-43 177.2 122 63.9
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 2.0e-42 176.0 131 64.1
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 4.4e-42 174.9 138 61.6
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 1.4e-40 169.9 134 59.0
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 1.2e-39 166.8 136 60.3
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 2.0e-39 166.0 137 56.9
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 3.9e-38 161.8 138 58.0
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 6.6e-38 161.0 136 56.6
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 8.6e-38 160.6 136 53.7
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 8.6e-38 160.6 137 55.5
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.8e-36 155.6 135 54.8
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 4.7e-36 154.8 138 52.9
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 1.2e-34 150.2 136 55.9
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 7.5e-34 147.5 135 51.9
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 7.8e-31 137.5 98 64.3
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 7.1e-24 114.4 119 47.1
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.3e-22 110.2 84 54.8
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 2.3e-22 109.4 150 40.7
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.9e-21 106.3 136 42.6
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 4.7e-20 101.7 144 38.9
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 8.1e-20 100.9 125 44.8
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 1.6e-12 76.6 153 34.0
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 8.4e-09 64.3 62 50.0
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.4e-08 62.8 104 35.6


User provided reference genes

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