Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p069801 Quercus lobata HOM05D010992 ORTHO05D000038 5.2e-122 441.0 221 100.0
QL09p006325 Quercus lobata HOM05D010992 ORTHO05D000038 7.8e-118 427.2 221 97.3
QL05p069825 Quercus lobata HOM05D010992 ORTHO05D000038 1.5e-108 396.4 205 97.1
Haze_17887 Corylus avellana HOM05D010992 ORTHO05D000038 1.5e-23 114.0 217 35.9
CiPaw.16G005300 Carya illinoinensis HOM05D010992 ORTHO05D000038 4.3e-23 112.5 198 36.9
QL08p013333 Quercus lobata HOM05D010992 ORTHO05D000038 1.2e-22 110.9 241 36.9
QL08p013288 Quercus lobata HOM05D010992 ORTHO05D000038 8.1e-22 108.2 238 37.0
CiPaw.15G006200 Carya illinoinensis HOM05D010992 ORTHO05D000038 2.0e-20 103.6 186 40.3
QL11p045313 Quercus lobata HOM05D010992 ORTHO05D000038 4.4e-20 102.4 219 34.2
CiPaw.15G006500 Carya illinoinensis HOM05D010992 ORTHO05D000038 7.5e-20 101.7 186 39.8
CiPaw.15G006400 Carya illinoinensis HOM05D010992 ORTHO05D000038 1.1e-18 97.8 186 39.2
CiPaw.15G006300 Carya illinoinensis HOM05D010992 ORTHO05D000038 2.4e-18 96.7 186 38.7
CiPaw.16G005400 Carya illinoinensis HOM05D010992 ORTHO05D000038 1.2e-17 94.4 189 35.4
Cfa018217 Carpinus fangiana HOM05D010992 ORTHO05D000038 2.3e-16 90.1 72 58.3
Haze_17889 Corylus avellana HOM05D058924 ORTHO05D000038 8.6e-16 88.2 76 53.9
Potri.013G116000 Populus trichocarpa HOM05D010992 ORTHO05D014613 7.6e-12 75.1 197 31.0
QL11p045315 Quercus lobata HOM05D010992 ORTHO05D010264 6.4e-11 72.0 71 42.3
PGR044G0297 Punica granatum HOM05D000082 ORTHO05D030517 5.4e-10 68.9 159 30.2
QL08p013786 Quercus lobata HOM05D000082 ORTHO05D000038 1.2e-09 67.8 81 48.1
QL08p013470 Quercus lobata HOM05D000082 ORTHO05D003202 4.6e-09 65.9 81 46.9
Atru.chr13.1866 Acer truncatum HOM05D000082 ORTHO05D000038 6.0e-09 65.5 160 30.0
Manes.12G069500 Manihot esculenta HOM05D015908 ORTHO05D014613 1.3e-08 64.3 195 28.7
Cpa.g.sc26.126 Carica papaya HOM05D000082 ORTHO05D000038 1.5e-07 60.8 131 32.8
Dinv09562 Davidia involucrata HOM05D011289 ORTHO05D013541 3.3e-07 59.7 183 29.5
EL10Ac1g01928 Beta vulgaris HOM05D000082 ORTHO05D000038 7.3e-07 58.5 97 36.1
PGR142G1050 Punica granatum HOM05D000082 ORTHO05D000038 9.6e-07 58.2 197 28.4
AL6G47070 Arabidopsis lyrata HOM05D008302 ORTHO05D000038 1.2e-06 57.8 179 30.7
EL10Ac1g01927 Beta vulgaris HOM05D000082 ORTHO05D000038 1.6e-06 57.4 97 35.1
CsaV3_1G039540 Cucumis sativus L. HOM05D000001 ORTHO05D000003 1.6e-06 57.4 49 49.0
THA.LOC104824660 Tarenaya hassleriana HOM05D049172 ORTHO05D000038 1.6e-06 57.4 68 38.2
AT4G12140 Arabidopsis thaliana HOM05D008302 ORTHO05D000038 2.1e-06 57.0 78 39.7
CsaV3_7G001950 Cucumis sativus L. HOM05D000082 ORTHO05D000038 2.1e-06 57.0 62 43.5
CsaV3_7G002010 Cucumis sativus L. HOM05D000082 ORTHO05D000038 2.1e-06 57.0 62 43.5
Gohir.D12G169600 Gossypium hirsutum HOM05D000082 ORTHO05D000038 2.1e-06 57.0 83 31.3
Gorai.008G182200 Gossypium raimondii HOM05D000082 ORTHO05D000038 2.1e-06 57.0 83 31.3
THA.LOC104808913 Tarenaya hassleriana HOM05D000082 ORTHO05D010264 2.1e-06 57.0 58 41.4
COL.COLO4_27842 Corchorus olitorius HOM05D000990 ORTHO05D000810 2.8e-06 56.6 65 44.6
Gohir.A12G166150 Gossypium hirsutum HOM05D000082 ORTHO05D000038 2.8e-06 56.6 83 31.3
Psat7g170200 Pisum sativum HOM05D024754 ORTHO05D000038 2.8e-06 56.6 46 54.3
Aa31sc15G80 Aethionema arabicum HOM05D008317 ORTHO05D010808 3.6e-06 56.2 61 37.7
Manes.03G121700 Manihot esculenta HOM05D000086 ORTHO05D001065 3.6e-06 56.2 57 42.1
AT5G37250 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 4.7e-06 55.8 93 33.3
MSTRG.23850 Avicennia marina HOM05D000082 ORTHO05D000038 4.7e-06 55.8 48 47.9
Carub.0006s3694 Capsella rubella HOM05D000341 ORTHO05D000557 4.7e-06 55.8 79 36.7
Haze_17888 Corylus avellana HOM05D058924 ORTHO05D000038 4.7e-06 55.8 53 50.9
THA.LOC104819029 Tarenaya hassleriana HOM05D000341 ORTHO05D001197 4.7e-06 55.8 45 44.4
TPR.G32355 Trifolium pratense HOM05D000082 ORTHO05D000038 4.7e-06 55.8 49 51.0
C03p08540 Brassica napus HOM05D000990 ORTHO05D000810 6.2e-06 55.5 82 36.6
BolC3t13359H Brassica oleracea HOM05D000990 ORTHO05D000810 6.2e-06 55.5 82 36.6
Cpa.g.sc20.15 Carica papaya HOM05D000082 ORTHO05D018908 6.2e-06 55.5 84 32.1
Cfa020896 Carpinus fangiana HOM05D003638 ORTHO05D003202 6.2e-06 55.5 52 42.3
Ciclev10003941m.g Citrus clementina HOM05D000082 ORTHO05D000038 6.2e-06 55.5 55 41.8
Haze_19323 Corylus avellana HOM05D003638 ORTHO05D003202 6.2e-06 55.5 52 42.3
MELO3C002199.2 Cucumis melo HOM05D000082 ORTHO05D000038 6.2e-06 55.5 78 42.3
MELO3C009075.2 Cucumis melo HOM05D000082 ORTHO05D000038 6.2e-06 55.5 147 29.3
FvH4_7g00020 Fragaria vesca HOM05D000082 ORTHO05D000038 6.2e-06 55.5 75 37.3
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 6.2e-06 55.5 75 37.3
FAN01G1746 Fragaria x ananassa HOM05D000082 ORTHO05D000038 6.2e-06 55.5 75 37.3
FAN03G0888 Fragaria x ananassa HOM05D000082 ORTHO05D000038 6.2e-06 55.5 75 37.3
FAN06G2343 Fragaria x ananassa HOM05D000082 ORTHO05D000038 6.2e-06 55.5 75 37.3
FAN10G1772 Fragaria x ananassa HOM05D000082 ORTHO05D000038 6.2e-06 55.5 75 37.3
MD07G1091500 Malus domestica HOM05D000086 ORTHO05D004422 6.2e-06 55.5 72 38.9
BcaNung02425 Brassica carinata HOM05D000082 ORTHO05D000038 8.1e-06 55.1 94 33.0
A03p38680 Brassica napus HOM05D000082 ORTHO05D000038 8.1e-06 55.1 47 48.9
BraA03t10059Z Brassica rapa HOM05D000990 ORTHO05D000810 8.1e-06 55.1 82 36.6
BraA03t13016Z Brassica rapa HOM05D000082 ORTHO05D000038 8.1e-06 55.1 47 48.9
CARHR003690 Cardamine hirsuta HOM05D000086 ORTHO05D003081 8.1e-06 55.1 80 31.2
Sed0008136 Sechium edule HOM05D018412 ORTHO05D030581 8.1e-06 55.1 89 33.7
THA.LOC104808919 Tarenaya hassleriana HOM05D008302 ORTHO05D010264 8.1e-06 55.1 58 39.7


User provided reference genes

Program Settings