Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p069622 Quercus lobata HOM05D007829 ORTHO05D009903 7.1e-149 530.8 310 100.0
CiPaw.10G078200 Carya illinoinensis HOM05D007829 ORTHO05D009903 2.0e-74 283.5 316 53.8
Dinv07407 Davidia involucrata HOM05D007829 ORTHO05D009903 6.6e-54 215.3 317 42.6
Hma1.2p1_0657F.1_g197120 Hydrangea macrophylla HOM05D007829 ORTHO05D009903 1.2e-50 204.5 313 43.1
Potri.016G013200 Populus trichocarpa HOM05D007829 ORTHO05D009903 6.4e-49 198.7 309 44.0
Rhsim02G0099400 Rhododendron simsii HOM05D007829 ORTHO05D009903 1.0e-46 191.4 285 41.8
Sabra16G0002200 Salix brachista HOM05D007829 ORTHO05D009903 1.7e-46 190.7 342 40.6
CSS0014217 Camellia sinensis var. sinensis HOM05D007829 ORTHO05D009903 3.0e-46 189.9 307 40.1
Prupe.4G010000 Prunus persica HOM05D007829 ORTHO05D009903 8.6e-46 188.3 266 44.4
Actinidia39272 Actinidia chinensis HOM05D007829 ORTHO05D009903 1.1e-45 188.0 304 40.1
Manes.08G071000 Manihot esculenta HOM05D007829 ORTHO05D009903 1.2e-42 177.9 305 38.4
MD10G1332100 Malus domestica HOM05D007829 ORTHO05D009903 2.6e-42 176.8 270 41.9
Sabra16G0015800 Salix brachista HOM05D007829 ORTHO05D009903 1.3e-41 174.5 326 39.9
Gohir.D10G008900 Gossypium hirsutum HOM05D007829 ORTHO05D009903 8.3e-41 171.8 297 39.1
TAR627G0564 Trochodendron aralioides HOM05D007829 ORTHO05D009903 1.1e-40 171.4 260 41.5
Gohir.A10G009200 Gossypium hirsutum HOM05D007829 ORTHO05D009903 2.4e-40 170.2 297 39.1
Ciclev10018278m.g Citrus clementina HOM05D007829 ORTHO05D009903 7.0e-40 168.7 199 48.7
Gorai.011G009700 Gossypium raimondii HOM05D007829 ORTHO05D009903 7.0e-40 168.7 297 38.7
Nn1g07397 Nelumbo nucifera HOM05D007829 ORTHO05D009903 7.0e-40 168.7 287 38.3
TWI38G1785 Tripterygium wilfordii HOM05D007829 ORTHO05D009903 1.6e-39 167.5 312 37.5
Thecc.06G233800 Theobroma cacao HOM05D007829 ORTHO05D009903 3.5e-39 166.4 262 39.3
Lj6g0010113 Lotus japonicus HOM05D007829 ORTHO05D009903 7.8e-39 165.2 305 35.7
PSO541G5076 Papaver somniferum HOM05D007829 ORTHO05D009903 3.9e-38 162.9 191 48.2
Medtr2g025760 Medicago truncatula HOM05D007829 ORTHO05D009903 5.0e-38 162.5 186 47.8
PSO675G8147 Papaver somniferum HOM05D007829 ORTHO05D009903 5.0e-38 162.5 191 47.6
Cpa.g.sc75.113 Carica papaya HOM05D007829 ORTHO05D009903 8.6e-38 161.8 190 46.3
arahy.Tifrunner.gnm1.ann1.G424KC Arachis hypogaea HOM05D007829 ORTHO05D009903 3.3e-37 159.8 187 45.5
Eucgr.D01411 Eucalyptus grandis HOM05D007829 ORTHO05D009903 9.5e-37 158.3 180 46.1
TAR627G1193 Trochodendron aralioides HOM05D007829 ORTHO05D009903 1.2e-36 157.9 248 40.7
Solyc11g012300.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 6.2e-36 155.6 186 45.7
PGR004G1136 Punica granatum HOM05D007829 ORTHO05D009903 1.8e-35 154.1 170 49.4
COL.COLO4_31889 Corchorus olitorius HOM05D007829 ORTHO05D009903 5.2e-35 152.5 306 36.3
Psat1g175960 Pisum sativum HOM05D007829 ORTHO05D009903 8.9e-35 151.8 318 35.8
SGA_v2.0_scaffold4G01872 Striga asiatica HOM05D007829 ORTHO05D009903 2.0e-34 150.6 177 44.6
Cfa000096 Carpinus fangiana HOM05D007829 ORTHO05D009903 2.6e-34 150.2 201 48.8
Migut.M01399 Erythranthe guttata HOM05D007829 ORTHO05D009903 2.9e-33 146.7 181 44.8
Cc00_g34400 Coffea canephora HOM05D007829 ORTHO05D009903 3.7e-33 146.4 204 42.2
Sopen11g007080 Solanum pennellii HOM05D007829 ORTHO05D009903 1.1e-32 144.8 149 49.7
Sc05g0009620 Simmondsia chinensis HOM05D007829 ORTHO05D009903 2.4e-32 143.7 182 42.3
CARHR229280 Cardamine hirsuta HOM05D007829 ORTHO05D009903 4.1e-32 142.9 170 44.1
PGSC0003DMG400013350 Solanum tuberosum HOM05D007829 ORTHO05D009903 5.4e-32 142.5 144 49.3
Aqoxy2G02687 Aquilegia oxysepala HOM05D007829 ORTHO05D009903 1.2e-31 141.4 227 34.4
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 1.6e-31 141.0 135 50.4
THA.LOC104813576 Tarenaya hassleriana HOM05D007829 ORTHO05D009903 1.6e-31 141.0 186 40.9
C01p16640 Brassica napus HOM05D007829 ORTHO05D009903 3.9e-30 136.3 180 42.8
BolC1t01611H Brassica oleracea HOM05D007829 ORTHO05D009903 3.9e-30 136.3 180 42.8
BcaC09g51100 Brassica carinata HOM05D007829 ORTHO05D009903 1.1e-29 134.8 180 42.2
A01p13730 Brassica napus HOM05D007829 ORTHO05D009903 5.6e-29 132.5 166 42.8
BraA01t01318Z Brassica rapa HOM05D007829 ORTHO05D009903 7.3e-29 132.1 180 41.7
Duzib235G0645 Durio zibethinus HOM05D007829 ORTHO05D009903 9.5e-29 131.7 203 43.3
CDE11G1237 Ceratophyllum demersum HOM05D007829 ORTHO05D009903 2.8e-28 130.2 183 38.8
TPR.G13103 Trifolium pratense HOM05D007829 ORTHO05D009903 4.7e-28 129.4 170 41.8
CANSAT56G1477 Cannabis sativa HOM05D007829 ORTHO05D009903 6.2e-28 129.0 186 40.9
Oeu002768.1 Olea europaea HOM05D007829 ORTHO05D009903 6.2e-28 129.0 183 42.1
Phvul.006G143000 Phaseolus vulgaris HOM05D007829 ORTHO05D009903 1.4e-27 127.9 182 41.2
FvH4_3g00940 Fragaria vesca HOM05D007829 ORTHO05D009903 1.8e-27 127.5 313 32.3
VMungo0540G1426 Vigna mungo HOM05D007829 ORTHO05D009903 2.4e-27 127.1 180 41.7
SalBow8G1028 Salvia bowleyana HOM05D007829 ORTHO05D009903 1.2e-26 124.8 173 42.2
RcHm_v2.0_Chr5g0001461 Rosa chinensis HOM05D007829 ORTHO05D009903 4.4e-26 122.9 313 31.9
FAN21G3309 Fragaria x ananassa HOM05D007829 ORTHO05D009903 7.6e-26 122.1 183 39.3
Glyma.09G010400 Glycine max HOM05D007829 ORTHO05D009903 7.6e-26 122.1 184 39.7
Glyma.15G114900 Glycine max HOM05D007829 ORTHO05D009903 9.9e-26 121.7 186 38.7
Sp7g20500 Schrenkiella parvula HOM05D007829 ORTHO05D009903 7.1e-24 115.5 164 40.2
AT4G22370 Arabidopsis thaliana HOM05D007829 ORTHO05D009903 1.6e-23 114.4 171 38.6
Lalb_Chr15g0088001 Lupinus albus HOM05D007829 ORTHO05D009903 2.1e-23 114.0 271 32.5
Peaxi162Scf00352g00215 Petunia axillaris HOM05D007829 ORTHO05D009903 4.6e-23 112.8 118 45.8
FAN25G0937 Fragaria x ananassa HOM05D007829 ORTHO05D009903 7.8e-23 112.1 280 33.9
TAR629G0037 Trochodendron aralioides HOM05D007829 ORTHO05D009903 6.6e-22 109.0 133 43.6
ATR0712G049 Amborella trichopoda HOM05D007829 ORTHO05D009903 3.3e-21 106.7 135 40.0
Carub.0007s1893 Capsella rubella HOM05D007829 ORTHO05D009903 1.8e-19 100.9 150 37.3
TPR.G18790 Trifolium pratense HOM05D007829 ORTHO05D009903 5.2e-19 99.4 195 33.8
AL7G31240 Arabidopsis lyrata HOM05D007829 ORTHO05D009903 3.0e-14 83.6 94 45.7
MBI19_g06149_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 3.0e-14 83.6 121 39.7
unitig_5.g30996 Utricularia gibba HOM05D000093 ORTHO05D001309 7.3e-13 79.0 143 34.3
Sed0017863 Sechium edule HOM05D007829 ORTHO05D009903 1.3e-12 78.2 137 33.6
Thhalv10027004m.g Eutrema salsugineum HOM05D007829 ORTHO05D009903 3.6e-12 76.6 126 37.3
Aa31LG6G4470 Aethionema arabicum HOM05D007829 ORTHO05D009903 4.8e-12 76.3 141 36.2
SEGI_16879 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 8.1e-12 75.5 148 30.4
Solyc11g012310.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 3.1e-11 73.6 92 44.6
SEGI_30590 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 4.0e-11 73.2 157 26.1
MBI16_g31712_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 6.9e-11 72.4 118 33.9
Rhsim07G0088000 Rhododendron simsii HOM05D002745 ORTHO05D002945 1.3e-09 68.2 143 28.7
Nn1g01627 Nelumbo nucifera HOM05D002745 ORTHO05D002945 8.4e-09 65.5 168 27.4
ClCG01G021470 Citrullus lanatus HOM05D007829 ORTHO05D009903 1.1e-08 65.1 179 27.9
Lsat_1_v5_gn_6_4781 Lactuca sativa HOM05D002745 ORTHO05D002945 1.1e-08 65.1 144 32.6
arahy.Tifrunner.gnm1.ann1.10XUBW Arachis hypogaea HOM05D007829 ORTHO05D009903 1.4e-08 64.7 52 51.9
AL7G47950 Arabidopsis lyrata HOM05D002745 ORTHO05D002945 3.2e-08 63.5 144 28.5
AT5G41470 Arabidopsis thaliana HOM05D002745 ORTHO05D002945 3.2e-08 63.5 144 28.5
unitig_748.g7131 Utricularia gibba HOM05D007829 ORTHO05D009903 3.2e-08 63.5 72 40.3
Carub.0007s3403 Capsella rubella HOM05D002745 ORTHO05D002945 5.4e-08 62.8 144 30.6
CsaV3_6G048490 Cucumis sativus L. HOM05D007829 ORTHO05D009903 5.4e-08 62.8 178 27.5
Sp7g00520 Schrenkiella parvula HOM05D002745 ORTHO05D002945 7.1e-08 62.4 144 26.4
SEGI_04580 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 7.1e-08 62.4 146 25.3
Actinidia33738 Actinidia chinensis HOM05D002745 ORTHO05D002945 2.1e-07 60.8 104 31.7
DCAR_000629 Daucus carota HOM05D002745 ORTHO05D002945 2.1e-07 60.8 138 27.5
CiPaw.11G131300 Carya illinoinensis HOM05D002745 ORTHO05D002945 6.0e-07 59.3 102 31.4
QL12p032067 Quercus lobata HOM05D002745 ORTHO05D002945 6.0e-07 59.3 144 26.4
Thecc.03G284700 Theobroma cacao HOM05D002745 ORTHO05D002945 1.8e-06 57.8 146 25.3
CSS0032449 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 3.0e-06 57.0 144 26.4
Medtr5g010050 Medicago truncatula HOM05D002745 ORTHO05D002945 3.0e-06 57.0 144 27.8
Nitab4.5_0015422g0020 Nicotiana tabacum HOM05D007829 ORTHO05D009903 3.0e-06 57.0 37 64.9
Psat2g182960 Pisum sativum HOM05D002745 ORTHO05D002945 6.7e-06 55.8 126 29.4
Migut.E01200 Erythranthe guttata HOM05D002745 ORTHO05D002945 8.7e-06 55.5 162 24.7
Solyc12g056190.2 Solanum lycopersicum HOM05D002745 ORTHO05D002945 8.7e-06 55.5 162 27.2


User provided reference genes

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