Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 2.3e-304 1048.1 537 100.0
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.1e-253 878.2 531 83.1
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 7.2e-250 867.1 533 80.9
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 8.8e-248 860.1 531 80.0
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 2.6e-247 858.6 529 80.7
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 3.3e-247 858.2 533 81.2
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 5.7e-247 857.4 531 79.7
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 9.7e-247 856.7 525 81.7
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 9.7e-247 856.7 525 80.4
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.4e-245 852.8 519 82.7
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.6e-244 849.4 533 79.9
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 5.9e-244 847.4 534 80.7
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 1.0e-243 846.7 527 79.7
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 1.9e-242 842.4 525 81.1
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 3.4e-239 831.6 528 78.2
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 1.1e-237 826.6 533 77.3
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.4e-237 826.2 532 76.5
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 3.1e-237 825.1 536 76.7
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 3.1e-237 825.1 535 77.0
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 7.0e-237 823.9 525 79.0
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 3.5e-236 821.6 527 78.2
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 5.9e-236 820.8 530 78.7
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 7.2e-234 813.9 525 76.2
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 1.2e-233 813.1 524 76.9
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 6.1e-233 810.8 522 77.8
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 6.8e-232 807.4 533 76.9
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 2.0e-231 805.8 522 76.2
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 5.7e-231 804.3 530 76.2
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 1.1e-229 800.0 542 74.0
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 1.4e-229 799.7 529 77.5
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.8e-229 799.3 530 75.7
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 3.5e-228 795.0 529 76.2
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 1.0e-227 793.5 537 73.6
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.3e-227 793.1 524 74.8
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 2.3e-227 792.3 526 74.1
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 2.3e-227 792.3 537 73.7
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.3e-227 792.3 524 74.8
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 3.8e-227 791.6 527 74.2
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 3.8e-227 791.6 525 74.9
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.6e-225 785.0 521 75.6
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 3.6e-225 785.0 517 75.2
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 6.1e-225 784.3 516 76.2
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 5.2e-224 781.2 536 73.1
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.2e-223 780.0 463 82.3
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 3.4e-223 778.5 504 77.8
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 2.2e-222 775.8 516 75.2
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 6.3e-222 774.2 537 71.7
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 8.3e-222 773.9 532 71.6
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 7.8e-220 767.3 535 73.5
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 1.3e-219 766.5 535 73.3
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 1.7e-219 766.1 532 73.9
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 2.9e-219 765.4 535 73.1
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 2.9e-219 765.4 518 72.6
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 5.0e-219 764.6 535 72.9
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 8.6e-219 763.8 542 72.3
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 8.6e-219 763.8 536 72.8
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 1.1e-218 763.5 463 81.0
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 2.5e-218 762.3 530 73.4
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 4.3e-218 761.5 533 72.4
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 7.3e-218 760.8 531 73.4
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 1.2e-217 760.0 531 72.9
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.2e-217 760.0 536 73.5
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 4.7e-217 758.1 533 73.0
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 6.1e-217 757.7 533 72.8
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 6.1e-217 757.7 533 72.8
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 6.1e-217 757.7 533 72.8
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 8.0e-217 757.3 530 71.9
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 8.0e-217 757.3 525 70.7
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 1.4e-216 756.5 527 73.6
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 1.4e-216 756.5 531 71.8
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 1.4e-216 756.5 533 71.9
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 1.8e-216 756.1 531 71.8
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 1.8e-216 756.1 531 71.8
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 3.1e-216 755.4 515 74.0
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 4.0e-216 755.0 525 72.6
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 6.8e-216 754.2 526 71.9
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 6.8e-216 754.2 513 71.7
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 8.9e-216 753.8 479 77.5
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 8.9e-216 753.8 501 74.3
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.2e-215 753.4 525 73.3
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 1.2e-215 753.4 530 71.5
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 1.2e-215 753.4 530 70.8
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 4.4e-215 751.5 524 70.8
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.3e-214 750.0 529 70.7
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 1.7e-214 749.6 531 72.3
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 3.7e-214 748.4 525 72.6
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 6.4e-214 747.7 525 73.0
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 9.2e-213 743.8 518 71.0
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.2e-212 743.4 527 70.6
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.2e-212 743.4 505 74.5
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 1.6e-212 743.0 520 71.0
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 1.6e-212 743.0 482 75.9
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 4.6e-212 741.5 520 70.8
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 4.6e-212 741.5 523 70.0
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 7.8e-212 740.7 482 75.7
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 1.0e-211 740.3 518 70.7
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 1.0e-211 740.3 524 69.8
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 5.0e-211 738.0 521 71.2
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 1.1e-210 736.9 527 69.4
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 1.5e-210 736.5 518 70.5
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 5.2e-208 728.0 520 69.0
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 5.2e-208 728.0 535 70.5
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 5.2e-208 728.0 436 81.9
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 1.2e-207 726.9 544 68.8
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.4e-205 719.9 529 68.6
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 4.7e-201 704.9 460 73.9
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 7.8e-196 687.6 452 75.4
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 2.9e-190 669.1 457 70.5
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.2e-188 663.7 527 63.2
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 1.7e-187 659.8 523 62.7
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 1.2e-183 647.1 427 74.7
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 3.2e-181 639.0 524 61.1
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 3.0e-179 632.5 529 60.9
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 3.9e-179 632.1 521 62.0
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 9.0e-176 620.9 386 79.3
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 9.0e-176 620.9 390 77.7
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.3e-174 617.1 543 58.6
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 4.9e-174 615.1 388 78.9
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 1.9e-170 603.2 521 60.7
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 5.6e-170 601.7 460 64.1
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 7.9e-164 581.3 391 72.1
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 5.3e-160 568.5 385 70.9
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 2.1e-156 556.6 361 75.6
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 2.5e-141 506.5 319 76.8
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 7.0e-136 488.4 354 68.6
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.5e-133 480.7 326 72.1
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 5.5e-133 478.8 474 50.4
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 2.9e-126 456.4 523 45.7
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 8.0e-124 448.4 456 49.1
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 1.7e-113 414.1 505 43.2
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 4.4e-106 389.4 542 39.1
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 5.0e-102 375.9 227 84.6
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.6e-92 344.4 248 71.8
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 5.6e-77 292.7 194 72.7
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 8.4e-73 278.9 194 74.7
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 3.4e-66 256.9 180 73.9
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 2.4e-59 234.2 152 78.9
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 1.3e-57 228.4 171 64.9
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 2.1e-52 211.1 156 71.8
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 8.1e-52 209.1 142 72.5
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 3.1e-51 207.2 148 70.9
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 2.9e-49 200.7 159 61.6
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 3.8e-41 173.7 146 61.6
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 2.5e-32 144.4 97 71.1
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 1.5e-29 135.2 150 49.3
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.0e-25 122.5 110 57.3
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 1.3e-25 122.1 74 81.1
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 7.4e-21 106.3 499 24.0
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 1.7e-20 105.1 71 69.0
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 1.8e-19 101.7 464 23.9
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 2.2e-12 78.2 67 53.7
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 2.2e-12 78.2 67 53.7
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 4.5e-10 70.5 53 64.2
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 1.7e-09 68.6 49 63.3
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.7e-09 68.6 46 69.6
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 8.5e-09 66.2 54 61.1
PRCOL_00006033 Prasinoderma coloniale HOM05D001221 ORTHO05D002870 2.3e-06 58.2 294 23.5


User provided reference genes

Program Settings