Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.2e-277 959.1 477 100.0
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.2e-277 959.1 477 100.0
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 9.6e-246 853.2 477 87.8
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 3.1e-244 848.2 504 83.3
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 4.0e-244 847.8 477 87.2
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 1.0e-231 806.6 479 83.3
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 5.6e-230 800.8 478 79.9
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 4.8e-229 797.7 477 80.7
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 6.2e-229 797.3 478 80.8
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.8e-228 795.8 478 81.0
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 3.4e-227 791.6 489 78.7
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 5.8e-227 790.8 478 79.9
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 1.7e-226 789.3 479 80.6
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 1.7e-226 789.3 479 82.3
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.8e-226 788.1 478 79.5
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 4.9e-226 787.7 477 77.8
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 3.2e-225 785.0 478 79.3
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 3.2e-225 785.0 483 78.9
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 4.6e-224 781.2 478 78.9
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 1.3e-223 779.6 478 78.5
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 1.3e-223 779.6 478 79.7
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 6.7e-223 777.3 478 78.7
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 8.7e-223 776.9 480 78.1
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 2.5e-222 775.4 479 78.5
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 3.3e-222 775.0 478 78.9
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 4.3e-222 774.6 480 78.8
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 4.8e-221 771.2 478 76.8
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 2.4e-220 768.8 483 78.7
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 2.4e-220 768.8 478 78.5
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 3.1e-220 768.5 482 77.2
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 3.1e-220 768.5 477 78.8
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 4.0e-220 768.1 483 77.0
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 5.3e-220 767.7 478 79.1
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 5.3e-220 767.7 482 78.2
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 6.9e-220 767.3 479 77.7
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 1.2e-219 766.5 478 78.0
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 1.2e-219 766.5 478 78.9
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 1.5e-219 766.1 495 77.2
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 2.0e-219 765.8 477 78.6
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 3.4e-219 765.0 478 78.5
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.7e-218 762.7 484 77.1
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 2.9e-218 761.9 477 76.9
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.1e-217 760.0 482 76.6
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 4.2e-217 758.1 478 77.8
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 6.0e-216 754.2 481 76.5
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 1.8e-215 752.7 482 75.1
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 7.4e-214 747.3 482 75.1
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 3.1e-212 741.9 483 74.1
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 1.2e-211 740.0 475 75.4
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 7.6e-211 737.3 479 74.3
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 2.9e-210 735.3 515 71.8
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 6.5e-210 734.2 481 73.8
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 3.2e-209 731.9 479 73.5
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 5.5e-209 731.1 477 74.4
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 5.5e-209 731.1 483 73.5
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 2.7e-208 728.8 478 73.2
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 3.5e-208 728.4 482 73.4
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 4.6e-208 728.0 480 74.6
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 4.6e-208 728.0 479 72.0
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 6.1e-208 727.6 492 72.4
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 7.9e-208 727.2 481 73.6
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 1.0e-207 726.9 482 74.1
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 2.3e-207 725.7 481 73.6
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 6.7e-207 724.2 481 73.2
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 1.6e-205 719.5 477 75.1
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 1.8e-204 716.1 477 73.2
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 2.4e-204 715.7 445 76.2
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 9.0e-204 713.8 479 72.4
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 1.2e-203 713.4 477 72.1
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 1.5e-203 713.0 480 73.1
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 3.4e-203 711.8 480 72.3
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 4.5e-203 711.4 477 71.1
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.0e-202 710.3 478 71.3
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 2.2e-202 709.1 477 72.3
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 2.9e-202 708.8 569 63.6
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 1.9e-201 706.1 480 72.3
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 1.9e-201 706.1 454 75.1
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 5.5e-201 704.5 479 70.8
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 7.2e-201 704.1 477 71.5
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 9.4e-201 703.7 479 71.2
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 3.6e-200 701.8 506 68.2
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 6.7e-199 697.6 418 80.4
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 6.7e-199 697.6 498 69.1
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 2.0e-198 696.0 479 70.4
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 2.5e-198 695.7 477 72.3
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 4.3e-198 694.9 477 71.3
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 2.8e-197 692.2 479 69.9
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 4.8e-197 691.4 479 69.5
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 4.1e-196 688.3 479 69.5
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 4.1e-196 688.3 479 69.5
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 1.2e-195 686.8 479 69.1
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 1.2e-195 686.8 478 69.9
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 1.5e-195 686.4 479 68.7
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 4.5e-195 684.9 487 69.8
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 6.5e-194 681.0 479 69.7
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 1.4e-193 679.9 431 75.4
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 2.5e-193 679.1 503 66.4
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 3.2e-193 678.7 488 70.3
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 3.6e-192 675.2 486 69.8
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 3.9e-191 671.8 466 71.5
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 1.1e-190 670.2 496 66.9
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 7.4e-190 667.5 517 66.7
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 7.0e-188 661.0 429 73.7
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 7.0e-188 661.0 479 66.6
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 4.5e-187 658.3 480 70.2
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 3.8e-186 655.2 478 65.9
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 1.0e-183 647.1 477 65.4
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 2.6e-182 642.5 414 74.6
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 7.2e-177 624.4 481 64.0
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 3.6e-176 622.1 424 75.5
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 6.3e-173 611.3 557 58.2
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.1e-168 596.3 485 59.8
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 4.9e-165 585.1 475 60.4
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 1.2e-163 580.5 475 57.5
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 1.6e-163 580.1 490 58.8
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 4.0e-159 565.5 412 68.4
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.5e-153 547.0 357 75.4
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 8.0e-152 541.2 496 58.9
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 1.8e-143 513.5 478 56.5
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 1.3e-101 374.4 253 66.8
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.5e-100 370.2 596 38.6
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 2.7e-99 366.7 527 44.4
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 7.2e-92 342.0 259 66.0
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 1.2e-86 324.7 213 77.0
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 6.1e-83 312.4 181 75.7
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 6.9e-79 298.9 384 48.4
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 7.2e-76 288.9 221 61.1
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 5.2e-74 282.7 545 35.2
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.1e-73 281.6 250 56.4
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.8e-71 274.2 183 78.7
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 4.4e-65 253.1 174 67.2
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 2.0e-62 244.2 266 47.7
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 8.3e-56 222.2 488 33.0
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 2.4e-55 220.7 427 37.2
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 3.0e-50 203.8 171 61.4
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 9.2e-47 192.2 379 34.6
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 6.4e-40 169.5 456 28.1
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.6e-38 164.9 455 29.0
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 4.6e-38 163.3 212 48.1
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 2.3e-34 151.0 220 40.5
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 1.5e-28 131.7 183 49.7
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 6.0e-22 109.8 65 86.2
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 2.1e-19 101.3 65 76.9
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 9.9e-17 92.4 65 73.8
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.9e-16 90.9 134 38.1
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 3.6e-11 73.9 64 59.4
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 8.1e-11 72.8 69 58.0
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 8.1e-11 72.8 68 58.8
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 2.4e-10 71.2 70 52.9
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 2.6e-09 67.8 50 56.0
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.4e-07 62.0 83 45.8


User provided reference genes

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