Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p067644 Quercus lobata HOM05D004714 ORTHO05D005614 7.3e-59 230.3 115 100.0
QL08p018134 Quercus lobata HOM05D004714 ORTHO05D005614 4.6e-45 184.5 102 90.2
QL11p004848 Quercus lobata HOM05D004714 ORTHO05D005614 2.3e-44 182.2 102 89.2
Haze_14511 Corylus avellana HOM05D004714 ORTHO05D005614 3.0e-44 181.8 102 88.2
CiPaw.08G034200 Carya illinoinensis HOM05D004714 ORTHO05D005614 4.3e-43 177.9 102 86.3
MD03G1036000 Malus domestica HOM05D004714 ORTHO05D005614 4.0e-41 171.4 103 79.6
Duzib168G0788 Durio zibethinus HOM05D004714 ORTHO05D005614 5.3e-41 171.0 102 81.4
MSTRG.10455 Avicennia marina HOM05D004714 ORTHO05D005614 6.9e-41 170.6 102 82.4
Cc05_g03940 Coffea canephora HOM05D004714 ORTHO05D005614 6.9e-41 170.6 102 83.3
Dinv25399 Davidia involucrata HOM05D004714 ORTHO05D005614 1.2e-40 169.9 102 83.3
MD13G1245000 Malus domestica HOM05D004714 ORTHO05D005614 2.0e-40 169.1 102 80.4
Atru.chr7.820 Acer truncatum HOM05D004714 ORTHO05D005614 2.6e-40 168.7 102 80.4
CSS0001667 Camellia sinensis var. sinensis HOM05D004714 ORTHO05D005614 7.6e-40 167.2 102 82.4
Prupe.1G079700 Prunus persica HOM05D004714 ORTHO05D005614 9.9e-40 166.8 102 79.4
Duzib160G0192 Durio zibethinus HOM05D004714 ORTHO05D005614 1.3e-39 166.4 102 78.4
Gohir.A08G018200 Gossypium hirsutum HOM05D004714 ORTHO05D005614 1.3e-39 166.4 102 78.4
Gohir.D08G028800 Gossypium hirsutum HOM05D004714 ORTHO05D005614 1.3e-39 166.4 102 78.4
Gorai.004G025900 Gossypium raimondii HOM05D004714 ORTHO05D005614 1.3e-39 166.4 102 78.4
Lj7A660G39 Lonicera japonica HOM05D004714 ORTHO05D005614 1.3e-39 166.4 101 82.2
Actinidia25713 Actinidia chinensis HOM05D004714 ORTHO05D005614 1.7e-39 166.0 102 80.4
FvH4_4g07660 Fragaria vesca HOM05D004714 ORTHO05D005614 2.2e-39 165.6 102 76.5
FAN12G0160 Fragaria x ananassa HOM05D004714 ORTHO05D005614 2.2e-39 165.6 102 76.5
Manes.14G158566 Manihot esculenta HOM05D004714 ORTHO05D005614 2.2e-39 165.6 102 80.4
FAN17G0676 Fragaria x ananassa HOM05D004714 ORTHO05D005614 2.9e-39 165.2 102 77.5
Lj7C659G12 Lonicera japonica HOM05D004714 ORTHO05D005614 3.8e-39 164.9 102 80.4
PGR142G4249 Punica granatum HOM05D004714 ORTHO05D005614 3.8e-39 164.9 102 77.5
RcHm_v2.0_Chr4g0400411 Rosa chinensis HOM05D004714 ORTHO05D005614 6.4e-39 164.1 102 76.5
Potri.018G088400 Populus trichocarpa HOM05D004714 ORTHO05D005614 8.4e-39 163.7 102 78.4
Rhsim05G0122400 Rhododendron simsii HOM05D004714 ORTHO05D005614 8.4e-39 163.7 102 81.4
Thecc.09G180100 Theobroma cacao HOM05D004714 ORTHO05D005614 1.1e-38 163.3 102 78.4
FAN07G0359 Fragaria x ananassa HOM05D004714 ORTHO05D005614 1.4e-38 162.9 102 75.5
Cpa.g.sc173.21 Carica papaya HOM05D004714 ORTHO05D005614 1.9e-38 162.5 102 80.4
Ciclev10009101m.g Citrus clementina HOM05D004714 ORTHO05D005614 2.4e-38 162.2 102 79.4
Eucgr.I01084 Eucalyptus grandis HOM05D004714 ORTHO05D005614 2.4e-38 162.2 102 75.5
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 2.4e-38 162.2 102 78.4
RcHm_v2.0_Chr4g0400471 Rosa chinensis HOM05D004714 ORTHO05D005614 2.4e-38 162.2 102 76.5
SGA_v2.0_scaffold63G21841 Striga asiatica HOM05D004714 ORTHO05D005614 2.4e-38 162.2 102 77.5
HanXRQChr05g0138351 Helianthus annuus HOM05D004714 ORTHO05D005614 3.2e-38 161.8 102 78.4
ECA236G1620 Erigeron canadensis HOM05D004714 ORTHO05D005614 4.2e-38 161.4 102 78.4
CAN.G992.24 Capsicum annuum HOM05D004714 ORTHO05D005614 5.5e-38 161.0 102 77.5
MBI07_g09259_MAGBIO Magnolia biondii HOM05D004714 ORTHO05D005614 5.5e-38 161.0 102 75.5
Sopen01g033030 Solanum pennellii HOM05D004714 ORTHO05D005614 5.5e-38 161.0 102 78.4
CANSAT11G1559 Cannabis sativa HOM05D004714 ORTHO05D005614 7.1e-38 160.6 102 78.4
HanXRQChr06g0179551 Helianthus annuus HOM05D004714 ORTHO05D005614 9.3e-38 160.2 102 78.4
Sabra18G0076900 Salix brachista HOM05D004714 ORTHO05D005614 9.3e-38 160.2 102 77.5
Rhsim08G0112000 Rhododendron simsii HOM05D004714 ORTHO05D005614 1.2e-37 159.8 102 80.4
Peaxi162Scf00907g00027 Petunia axillaris HOM05D004714 ORTHO05D005614 2.1e-37 159.1 102 75.5
Solyc01g081470.4 Solanum lycopersicum HOM05D004714 ORTHO05D005614 2.1e-37 159.1 102 76.5
MELO3C005041.2 Cucumis melo HOM05D004714 ORTHO05D005614 2.7e-37 158.7 102 75.5
DCAR_002998 Daucus carota HOM05D004714 ORTHO05D005614 2.7e-37 158.7 102 75.5
PGSC0003DMG400031122 Solanum tuberosum HOM05D004714 ORTHO05D005614 2.7e-37 158.7 102 77.5
TAR623G1076 Trochodendron aralioides HOM05D004714 ORTHO05D005614 3.5e-37 158.3 102 77.5
CsaV3_1G012970 Cucumis sativus L. HOM05D004714 ORTHO05D005614 4.6e-37 157.9 102 76.5
TWI32G1166 Tripterygium wilfordii HOM05D004714 ORTHO05D005614 4.6e-37 157.9 102 75.5
Nn4g22433 Nelumbo nucifera HOM05D004714 ORTHO05D005614 6.0e-37 157.5 102 74.5
RcHm_v2.0_Chr4g0400331 Rosa chinensis HOM05D004714 ORTHO05D005614 6.0e-37 157.5 102 73.5
Oeu031756.1 Olea europaea HOM05D004714 ORTHO05D005614 7.9e-37 157.1 102 75.5
ATR0686G131 Amborella trichopoda HOM05D004714 ORTHO05D005614 1.0e-36 156.8 102 73.5
CARHR271100 Cardamine hirsuta HOM05D004714 ORTHO05D005614 1.0e-36 156.8 102 78.4
Nn3g18335 Nelumbo nucifera HOM05D004714 ORTHO05D005614 1.3e-36 156.4 102 73.5
BcaC04g19980 Brassica carinata HOM05D004714 ORTHO05D005614 1.8e-36 156.0 102 77.5
C09p49140 Brassica napus HOM05D004714 ORTHO05D005614 1.8e-36 156.0 102 77.5
BolC9t57763H Brassica oleracea HOM05D004714 ORTHO05D005614 1.8e-36 156.0 102 77.5
Nitab4.5_0006785g0020 Nicotiana tabacum HOM05D004714 ORTHO05D005614 2.3e-36 155.6 102 74.5
Sc24g0003530 Simmondsia chinensis HOM05D004714 ORTHO05D005614 2.3e-36 155.6 102 72.5
RcHm_v2.0_Chr4g0400601 Rosa chinensis HOM05D004714 ORTHO05D005614 3.0e-36 155.2 102 72.5
A10p14730 Brassica napus HOM05D004714 ORTHO05D005614 3.9e-36 154.8 102 76.5
Migut.L01902 Erythranthe guttata HOM05D004714 ORTHO05D005614 6.7e-36 154.1 102 75.5
vmacro19765 Vaccinium macrocarpon HOM05D004714 ORTHO05D005614 6.7e-36 154.1 111 74.8
CSS0022683 Camellia sinensis var. sinensis HOM05D004714 ORTHO05D005614 1.1e-35 153.3 97 78.4
BcaB08g36090 Brassica carinata HOM05D004714 ORTHO05D005614 1.5e-35 152.9 102 76.5
BraA10t43556Z Brassica rapa HOM05D004714 ORTHO05D005614 1.5e-35 152.9 102 76.5
Sed0009644 Sechium edule HOM05D004714 ORTHO05D005614 1.5e-35 152.9 102 72.5
Nitab4.5_0000792g0180 Nicotiana tabacum HOM05D004714 ORTHO05D005614 1.9e-35 152.5 102 73.5
Aqoxy7G03018 Aquilegia oxysepala HOM05D004714 ORTHO05D005614 2.5e-35 152.1 102 73.5
Aqoxy7G03753 Aquilegia oxysepala HOM05D004714 ORTHO05D005614 2.5e-35 152.1 102 73.5
ClCG03G002280 Citrullus lanatus HOM05D004714 ORTHO05D005614 5.6e-35 151.0 97 75.3
EL10Ac6g14222 Beta vulgaris HOM05D004714 ORTHO05D005614 2.1e-34 149.1 102 75.5
unitig_8.g4678 Utricularia gibba HOM05D004714 ORTHO05D005614 2.1e-34 149.1 102 71.6
GSVIVG01024342001 Vitis vinifera HOM05D004714 ORTHO05D005614 2.1e-34 149.1 102 69.6
C03p15050 Brassica napus HOM05D004714 ORTHO05D005614 2.8e-34 148.7 102 74.5
BolC3t13947H Brassica oleracea HOM05D004714 ORTHO05D005614 2.8e-34 148.7 102 74.5
Lalb_Chr01g0012111 Lupinus albus HOM05D004714 ORTHO05D005614 2.8e-34 148.7 102 69.6
PSO541G2874 Papaver somniferum HOM05D004714 ORTHO05D005614 2.8e-34 148.7 102 71.6
AL8G33270 Arabidopsis lyrata HOM05D004714 ORTHO05D005614 4.8e-34 147.9 102 75.5
AT5G57300 Arabidopsis thaliana HOM05D004714 ORTHO05D005614 4.8e-34 147.9 102 75.5
PSO675G7537 Papaver somniferum HOM05D004714 ORTHO05D005614 4.8e-34 147.9 102 70.6
Thhalv10014276m.g Eutrema salsugineum HOM05D004714 ORTHO05D005614 8.1e-34 147.1 102 74.5
BcaB01g04462 Brassica carinata HOM05D004714 ORTHO05D005614 1.1e-33 146.7 102 73.5
BraA03t10598Z Brassica rapa HOM05D004714 ORTHO05D005614 1.1e-33 146.7 102 72.5
TWI34G0504 Tripterygium wilfordii HOM05D004714 ORTHO05D005614 1.1e-33 146.7 102 72.5
A03p12900 Brassica napus HOM05D004714 ORTHO05D005614 1.4e-33 146.4 102 72.5
Carub.0008s1781 Capsella rubella HOM05D004714 ORTHO05D005614 3.1e-33 145.2 102 74.5
Lj3g0005475 Lotus japonicus HOM05D004714 ORTHO05D005614 3.1e-33 145.2 102 68.6
Medtr4g009880 Medicago truncatula HOM05D004714 ORTHO05D005614 3.1e-33 145.2 102 68.6
SalBow4G0166 Salvia bowleyana HOM05D004714 ORTHO05D005614 3.1e-33 145.2 102 70.6
Sp6g19030 Schrenkiella parvula HOM05D004714 ORTHO05D005614 3.1e-33 145.2 102 73.5
COL.COLO4_36489 Corchorus olitorius HOM05D004714 ORTHO05D005614 5.3e-33 144.4 102 70.6
VMungo0331G1132 Vigna mungo HOM05D004714 ORTHO05D005614 5.3e-33 144.4 102 67.6
Ca_12516_v3 Cicer arietinum L. HOM05D004714 ORTHO05D005614 6.9e-33 144.1 102 67.6
Ca_12517_v3 Cicer arietinum L. HOM05D004714 ORTHO05D005614 6.9e-33 144.1 102 67.6
Aa31LG3G13180 Aethionema arabicum HOM05D004714 ORTHO05D005614 9.0e-33 143.7 102 71.6
THA.LOC104802911 Tarenaya hassleriana HOM05D004714 ORTHO05D005614 9.0e-33 143.7 102 71.6
SalBow4G0136 Salvia bowleyana HOM05D004714 ORTHO05D005614 1.2e-32 143.3 102 69.6
HPP92_017314 Vanilla planifolia HOM05D004714 ORTHO05D005614 1.2e-32 143.3 102 69.6
AUR62014206 Chenopodium quinoa HOM05D004714 ORTHO05D005614 1.5e-32 142.9 102 71.6
arahy.Tifrunner.gnm1.ann1.ZK581Z Arachis hypogaea HOM05D004714 ORTHO05D005614 3.4e-32 141.7 102 68.6
arahy.Tifrunner.gnm1.ann1.72XQC0 Arachis hypogaea HOM05D004714 ORTHO05D005614 5.8e-32 141.0 102 68.6
Os01g0976600 Oryza sativa ssp. japonica HOM05D004714 ORTHO05D005614 5.8e-32 141.0 102 69.6
Glyma.07G028400 Glycine max HOM05D004714 ORTHO05D005614 1.0e-31 140.2 102 65.7
AUR62041230 Chenopodium quinoa HOM05D004714 ORTHO05D005614 1.3e-31 139.8 102 69.6
Psat7g257720 Pisum sativum HOM05D004714 ORTHO05D005614 1.3e-31 139.8 102 65.7
BcaC03g14165 Brassica carinata HOM05D004714 ORTHO05D005614 1.7e-31 139.4 102 71.6
C02p14380 Brassica napus HOM05D004714 ORTHO05D005614 1.7e-31 139.4 102 71.6
BolC2t07562H Brassica oleracea HOM05D004714 ORTHO05D005614 1.7e-31 139.4 102 71.6
Glyma.08G214400 Glycine max HOM05D004714 ORTHO05D005614 1.7e-31 139.4 102 65.7
Phvul.010G157500 Phaseolus vulgaris HOM05D004714 ORTHO05D005614 1.7e-31 139.4 102 66.7
TPR.G38676 Trifolium pratense HOM05D004714 ORTHO05D005614 4.9e-31 137.9 102 65.7
Zm00001eb362110 Zea mays HOM05D004714 ORTHO05D005614 1.1e-30 136.7 102 65.7
Zm00001eb398140 Zea mays HOM05D004714 ORTHO05D005614 7.1e-30 134.0 102 65.7
BcaB05g22335 Brassica carinata HOM05D004714 ORTHO05D005614 9.3e-30 133.7 97 71.1
Duzib168G1985 Durio zibethinus HOM05D004714 ORTHO05D005614 1.6e-29 132.9 102 66.7
CDE02G3847 Ceratophyllum demersum HOM05D004714 ORTHO05D005614 3.5e-29 131.7 102 58.8
Thecc.09G241900 Theobroma cacao HOM05D004714 ORTHO05D005614 3.5e-29 131.7 102 66.7
SEGI_34543 Sequoiadendron giganteum HOM05D004714 ORTHO05D005614 6.7e-28 127.5 103 61.2
AagrBONN_evm.TU.Sc2ySwM_117.468 Anthoceros agrestis HOM05D004714 ORTHO05D005614 3.7e-26 121.7 104 56.7
SHI02880 Sapria himalayana HOM05D004714 ORTHO05D005614 1.2e-24 116.7 102 57.8
Mapoly0052s0093 Marchantia polymorpha HOM05D004714 ORTHO05D005614 1.5e-24 116.3 103 57.3
Pp3c3_21690 Physcomitrium patens HOM05D004714 ORTHO05D005614 1.0e-23 113.6 103 54.4
SMO115G0141 Selaginella moellendorffii HOM05D004714 ORTHO05D005614 3.2e-22 108.6 124 49.2
A02p08610 Brassica napus HOM05D004714 ORTHO05D005614 4.2e-22 108.2 80 70.0
Oeu015328.1 Olea europaea HOM05D004714 ORTHO05D005614 1.8e-20 102.8 65 76.9
Dinv25435 Davidia involucrata HOM05D004714 ORTHO05D005614 1.9e-19 99.4 101 56.4
RcHm_v2.0_Chr4g0400661 Rosa chinensis HOM05D004714 ORTHO05D005614 4.8e-18 94.7 61 72.1
COL.COLO4_25457 Corchorus olitorius HOM05D004714 ORTHO05D005614 1.7e-15 86.3 49 85.7
CBR_g3967 Chara braunii HOM05D004714 ORTHO05D005614 2.2e-15 85.9 105 43.8
BraA02t05930Z Brassica rapa HOM05D004714 ORTHO05D005614 7.2e-14 80.9 61 68.9
DCAR_003032 Daucus carota HOM05D004714 ORTHO05D005614 1.2e-13 80.1 49 79.6
Zm00001eb302180 Zea mays HOM05D004714 ORTHO05D005614 1.7e-10 69.7 48 64.6
SGA_v2.0_scaffold905G53712 Striga asiatica HOM05D004714 ORTHO05D005614 4.8e-10 68.2 47 68.1
Cre05.g245450 Chlamydomonas reinhardtii HOM05D004714 ORTHO05D005614 1.1e-09 67.0 72 51.4
Haze_26398 Corylus avellana HOM05D004714 ORTHO05D005614 9.1e-09 63.9 103 39.8
PRCOL_00006789 Prasinoderma coloniale HOM05D004714 ORTHO05D005614 9.1e-09 63.9 102 42.2


User provided reference genes

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