Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p066293 Quercus lobata HOM05D008403 ORTHO05D010317 4.1e-96 354.8 185 100.0
QL05p066264 Quercus lobata HOM05D008403 ORTHO05D010317 9.6e-53 210.7 186 62.9
CiPaw.09G112600 Carya illinoinensis HOM05D008403 ORTHO05D010317 1.9e-40 169.9 185 56.8
CANSAT56G1928 Cannabis sativa HOM05D008403 ORTHO05D010317 1.0e-38 164.1 159 54.7
COL.COLO4_27522 Corchorus olitorius HOM05D008403 ORTHO05D010317 8.8e-38 161.0 174 54.0
Duzib268G1784 Durio zibethinus HOM05D008403 ORTHO05D010317 1.1e-37 160.6 153 58.8
RcHm_v2.0_Chr5g0000141 Rosa chinensis HOM05D008403 ORTHO05D010317 2.0e-37 159.8 181 52.5
TWI31G1421 Tripterygium wilfordii HOM05D008403 ORTHO05D010317 7.4e-37 157.9 187 51.3
FvH4_3g00110 Fragaria vesca HOM05D008403 ORTHO05D010317 2.6e-34 149.4 184 48.9
Prupe.4G001200 Prunus persica HOM05D008403 ORTHO05D010317 7.7e-34 147.9 160 51.2
Potri.008G013400 Populus trichocarpa HOM05D008403 ORTHO05D010317 1.7e-33 146.7 159 52.8
Sabra08G0008100 Salix brachista HOM05D008403 ORTHO05D010317 1.7e-33 146.7 186 48.4
Aqoxy4G02379 Aquilegia oxysepala HOM05D008403 ORTHO05D010317 5.0e-33 145.2 185 46.5
FAN25G0691 Fragaria x ananassa HOM05D000186 ORTHO05D001124 5.0e-33 145.2 154 51.3
Cpa.g.sc27.190 Carica papaya HOM05D008403 ORTHO05D010317 5.5e-32 141.7 150 48.7
CSS0029866 Camellia sinensis var. sinensis HOM05D008403 ORTHO05D010317 2.1e-31 139.8 159 49.7
Potri.016G001600 Populus trichocarpa HOM05D008403 ORTHO05D010317 1.0e-30 137.5 182 48.4
Eucgr.D00968 Eucalyptus grandis HOM05D008403 ORTHO05D010317 5.2e-30 135.2 170 46.5
Manes.08G015200 Manihot esculenta HOM05D008403 ORTHO05D010317 1.1e-29 134.0 179 44.7
Atru.chr2.423 Acer truncatum HOM05D008403 ORTHO05D010317 4.4e-29 132.1 150 50.0
Lj6g0020324 Lotus japonicus HOM05D008403 ORTHO05D010317 9.7e-29 131.0 184 46.7
CiPaw.08G030100 Carya illinoinensis HOM05D008403 ORTHO05D010317 1.7e-28 130.2 182 46.2
Lalb_Chr20g0119681 Lupinus albus HOM05D008403 ORTHO05D010317 2.8e-28 129.4 177 44.6
Rhsim02G0087900 Rhododendron simsii HOM05D008403 ORTHO05D010317 3.7e-28 129.0 155 47.7
Oeu016936.1 Olea europaea HOM05D008403 ORTHO05D010317 5.3e-27 125.2 184 40.2
PGR004G1348 Punica granatum HOM05D008403 ORTHO05D010317 7.0e-27 124.8 164 42.1
Atru.chr1.2232 Acer truncatum HOM05D008403 ORTHO05D010317 1.6e-26 123.6 171 45.0
Atru.chr2.427 Acer truncatum HOM05D008403 ORTHO05D010317 7.7e-26 121.3 173 43.4
Atru.chr2.1377 Acer truncatum HOM05D008403 ORTHO05D010317 2.9e-25 119.4 144 45.1
Ciclev10017450m.g Citrus clementina HOM05D008403 ORTHO05D010317 4.2e-24 115.5 162 44.4
PGR004G1501 Punica granatum HOM05D008403 ORTHO05D010317 9.4e-24 114.4 188 38.8
PSO675G4416 Papaver somniferum HOM05D008403 ORTHO05D010317 3.7e-20 102.4 180 41.1
Actinidia04549 Actinidia chinensis HOM05D008403 ORTHO05D010317 1.6e-18 97.1 146 43.8
PSO541G3674 Papaver somniferum HOM05D008403 ORTHO05D010317 1.7e-17 93.6 165 39.4
SGA_v2.0_scaffold7G03659 Striga asiatica HOM05D008403 ORTHO05D010317 1.7e-17 93.6 182 34.6
Oeu017922.1 Olea europaea HOM05D008403 ORTHO05D010317 8.5e-17 91.3 105 40.0
PSO732G0092 Papaver somniferum HOM05D008403 ORTHO05D010317 2.7e-15 86.3 170 36.5
SGA_v2.0_scaffold186G40151 Striga asiatica HOM05D008403 ORTHO05D010317 4.7e-15 85.5 152 35.5
TAR627G0716 Trochodendron aralioides HOM05D008403 ORTHO05D010317 4.7e-15 85.5 165 35.2
PSO675G0961 Papaver somniferum HOM05D008403 ORTHO05D010317 8.0e-15 84.7 176 35.8
MBI18_g04557_MAGBIO Magnolia biondii HOM05D008403 ORTHO05D010317 1.4e-14 84.0 164 31.7
Rhsim02G0088000 Rhododendron simsii HOM05D008403 ORTHO05D010317 1.8e-14 83.6 151 38.4
Migut.F01664 Erythranthe guttata HOM05D008403 ORTHO05D010317 4.0e-14 82.4 184 35.3
PSO732G0094 Papaver somniferum HOM05D008403 ORTHO05D010317 1.2e-13 80.9 177 34.5
Gohir.A06G202800 Gossypium hirsutum HOM05D014554 ORTHO05D010317 1.5e-13 80.5 183 36.6
Oeu002789.2 Olea europaea HOM05D008403 ORTHO05D010317 2.0e-13 80.1 136 35.3
Gorai.010G247400 Gossypium raimondii HOM05D014554 ORTHO05D010317 2.6e-13 79.7 190 37.4
SGA_v2.0_scaffold186G40153 Striga asiatica HOM05D008403 ORTHO05D010317 3.4e-13 79.3 134 35.1
PSO732G0610 Papaver somniferum HOM05D008403 ORTHO05D010317 5.7e-13 78.6 158 33.5
Gohir.D06G218900 Gossypium hirsutum HOM05D014554 ORTHO05D010317 1.3e-12 77.4 190 36.8
PSO732G0597 Papaver somniferum HOM05D008403 ORTHO05D010317 1.7e-12 77.0 157 34.4
Thecc.06G243800 Theobroma cacao HOM05D014554 ORTHO05D010317 1.7e-12 77.0 182 34.1
PSO732G0418 Papaver somniferum HOM05D008403 ORTHO05D010317 3.7e-12 75.9 185 33.5
Thecc.05G027500 Theobroma cacao HOM05D014554 ORTHO05D036092 8.3e-12 74.7 177 33.9
MD13G1150200 Malus domestica HOM05D001578 ORTHO05D001207 4.1e-11 72.4 184 32.1
Migut.M01476 Erythranthe guttata HOM05D008403 ORTHO05D010317 1.6e-10 70.5 162 32.1
HanXRQChr08g0218241 Helianthus annuus HOM05D004113 ORTHO05D005233 7.7e-10 68.2 146 30.8
Lj6g0019770 Lotus japonicus HOM05D000001 ORTHO05D010775 7.7e-10 68.2 97 42.3
Lalb_Chr15g0088411 Lupinus albus HOM05D008403 ORTHO05D010317 1.0e-09 67.8 80 50.0
Thecc.02G296800 Theobroma cacao HOM05D008403 ORTHO05D010317 1.3e-09 67.4 78 50.0
TAR362G0352 Trochodendron aralioides HOM05D008191 ORTHO05D010044 2.3e-09 66.6 180 28.3
Prupe.1G114500 Prunus persica HOM05D001578 ORTHO05D001207 5.0e-09 65.5 175 30.9
TAR627G0317 Trochodendron aralioides HOM05D008403 ORTHO05D010317 1.5e-08 63.9 173 28.9
Ciclev10006511m.g Citrus clementina HOM05D001578 ORTHO05D001207 2.5e-08 63.2 165 29.7
Manes.15G002000 Manihot esculenta HOM05D001578 ORTHO05D001207 3.2e-08 62.8 149 31.5
MBI07_g46097_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D013640 4.2e-08 62.4 114 32.5
MD13G1150400 Malus domestica HOM05D001578 ORTHO05D001207 4.2e-08 62.4 176 31.8
Carub.0008s2541 Capsella rubella HOM05D004113 ORTHO05D005233 7.2e-08 61.6 173 28.9
Haze_04964 Corylus avellana HOM05D003556 ORTHO05D003404 7.2e-08 61.6 144 29.2
HanXRQChr12g0368871 Helianthus annuus HOM05D004113 ORTHO05D005233 7.2e-08 61.6 146 30.1
Lsat_1_v5_gn_8_17501 Lactuca sativa HOM05D004113 ORTHO05D005233 7.2e-08 61.6 144 29.9
Prupe.1G113800 Prunus persica HOM05D001578 ORTHO05D001207 7.2e-08 61.6 145 31.7
RhsimUnG0017500 Rhododendron simsii HOM05D004113 ORTHO05D005233 7.2e-08 61.6 183 29.5
ATR0693G401 Amborella trichopoda HOM05D001445 ORTHO05D001261 9.5e-08 61.2 148 29.7
CiPaw.08G093400 Carya illinoinensis HOM05D003556 ORTHO05D003404 9.5e-08 61.2 186 25.8
MBI07_g43317_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D001261 9.5e-08 61.2 116 35.3
Actinidia21437 Actinidia chinensis HOM05D003556 ORTHO05D003404 1.2e-07 60.8 169 27.2
Prupe.6G197400 Prunus persica HOM05D004113 ORTHO05D005233 1.2e-07 60.8 146 30.1
RhsimUnG0133000 Rhododendron simsii HOM05D004113 ORTHO05D005233 1.2e-07 60.8 183 30.1
RcHm_v2.0_Chr3g0486661 Rosa chinensis HOM05D008191 ORTHO05D010044 1.2e-07 60.8 142 28.9
CSS0043898 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 1.6e-07 60.5 140 30.0
CSS0044540 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 1.6e-07 60.5 138 29.7
COL.COLO4_14675 Corchorus olitorius HOM05D014554 ORTHO05D010317 1.6e-07 60.5 153 31.4
Rhsim13G0002900 Rhododendron simsii HOM05D001578 ORTHO05D001207 1.6e-07 60.5 168 30.4
Lj1g0003494 Lotus japonicus HOM05D004113 ORTHO05D005233 2.1e-07 60.1 143 29.4
TPR.G25407 Trifolium pratense HOM05D001578 ORTHO05D001207 2.1e-07 60.1 146 30.8
Aqoxy2G02898 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 2.8e-07 59.7 176 27.3
Aqoxy5G00783 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 2.8e-07 59.7 163 26.4
Ca_16933_v3 Cicer arietinum L. HOM05D004113 ORTHO05D005233 2.8e-07 59.7 141 28.4
TWI59G0004 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 2.8e-07 59.7 155 29.0
Aqoxy2G02574 Aquilegia oxysepala HOM05D030271 ORTHO05D026710 3.6e-07 59.3 142 28.2
PGR004G2081 Punica granatum HOM05D003146 ORTHO05D001819 3.6e-07 59.3 182 28.6
AL3G30250 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 4.7e-07 58.9 143 29.4
COL.COLO4_14678 Corchorus olitorius HOM05D014554 ORTHO05D010317 4.7e-07 58.9 187 28.3
Glyma.04G214000 Glycine max HOM05D004113 ORTHO05D005233 4.7e-07 58.9 163 29.4
Glyma.06G152400 Glycine max HOM05D004113 ORTHO05D005233 4.7e-07 58.9 145 29.7
Glyma.17G036300 Glycine max HOM05D001578 ORTHO05D001207 4.7e-07 58.9 141 29.8
Nitab4.5_0000651g0280 Nicotiana tabacum HOM05D001578 ORTHO05D001207 4.7e-07 58.9 147 27.9
Phvul.009G149400 Phaseolus vulgaris HOM05D004113 ORTHO05D005233 4.7e-07 58.9 141 30.5
CiPaw.01G135600 Carya illinoinensis HOM05D001578 ORTHO05D001207 6.1e-07 58.5 178 30.3
Lalb_Chr12g0200781 Lupinus albus HOM05D001578 ORTHO05D001207 6.1e-07 58.5 146 28.8
Manes.15G002100 Manihot esculenta HOM05D001578 ORTHO05D001207 6.1e-07 58.5 148 29.1
PSO144G0022 Papaver somniferum HOM05D023066 ORTHO05D037272 6.1e-07 58.5 142 31.0
AT3G17220 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 8.0e-07 58.2 143 29.4
Carub.0003s1698 Capsella rubella HOM05D003146 ORTHO05D001819 8.0e-07 58.2 146 30.1
Cfa004856 Carpinus fangiana HOM05D012615 ORTHO05D010044 8.0e-07 58.2 185 27.0
Lalb_Chr08g0238441 Lupinus albus HOM05D004113 ORTHO05D005233 8.0e-07 58.2 141 29.1
PSO832G2602 Papaver somniferum HOM05D003556 ORTHO05D003404 8.0e-07 58.2 172 30.2
Prupe.5G112600 Prunus persica HOM05D001578 ORTHO05D001207 8.0e-07 58.2 169 29.6
QL06p012845 Quercus lobata HOM05D001578 ORTHO05D001207 8.0e-07 58.2 177 26.0
Rhsim06G0181100 Rhododendron simsii HOM05D009438 ORTHO05D001819 8.0e-07 58.2 119 31.9
RcHm_v2.0_Chr4g0425861 Rosa chinensis HOM05D001578 ORTHO05D001207 8.0e-07 58.2 150 28.7
Sc01g0006950 Simmondsia chinensis HOM05D004113 ORTHO05D005233 8.0e-07 58.2 141 29.8
Thecc.09G068900 Theobroma cacao HOM05D001445 ORTHO05D003404 8.0e-07 58.2 163 28.8
ATR1149G037 Amborella trichopoda HOM05D003556 ORTHO05D003404 1.0e-06 57.8 142 31.0
MD12G1203300 Malus domestica HOM05D008339 ORTHO05D009712 1.0e-06 57.8 171 26.9
TAR636G1790 Trochodendron aralioides HOM05D004113 ORTHO05D005233 1.0e-06 57.8 148 29.1
arahy.Tifrunner.gnm1.ann1.2R90TF Arachis hypogaea HOM05D000961 ORTHO05D001207 1.4e-06 57.4 148 29.1
BcaB04g19979 Brassica carinata HOM05D004113 ORTHO05D005233 1.4e-06 57.4 146 31.5
Dinv06063 Davidia involucrata HOM05D004113 ORTHO05D005233 1.4e-06 57.4 143 27.3
QL06p029175 Quercus lobata HOM05D004113 ORTHO05D005233 1.4e-06 57.4 142 29.6
Ciclev10002604m.g Citrus clementina HOM05D004113 ORTHO05D005233 1.8e-06 57.0 175 29.7
FvH4_4g20180 Fragaria vesca HOM05D001578 ORTHO05D001207 1.8e-06 57.0 150 28.0
FAN12G2195 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.8e-06 57.0 150 28.0
Manes.03G207000 Manihot esculenta HOM05D001578 ORTHO05D001207 1.8e-06 57.0 145 26.9
Sp2g27680 Schrenkiella parvula HOM05D004113 ORTHO05D005233 1.8e-06 57.0 148 31.8
Atru.chr4.844 Acer truncatum HOM05D004113 ORTHO05D005233 2.3e-06 56.6 145 27.6
CSS0012414 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 2.3e-06 56.6 176 26.7
CARHR287460 Cardamine hirsuta HOM05D004113 ORTHO05D005233 2.3e-06 56.6 166 28.9
Duzib052G0195 Durio zibethinus HOM05D001578 ORTHO05D001207 2.3e-06 56.6 153 30.1
PSO210G6958 Papaver somniferum HOM05D003556 ORTHO05D003404 2.3e-06 56.6 158 29.7
Prupe.6G309300 Prunus persica HOM05D008339 ORTHO05D009712 2.3e-06 56.6 174 27.6
TAR628G0877 Trochodendron aralioides HOM05D004113 ORTHO05D005233 2.3e-06 56.6 130 33.8
Nitab4.5_0010452g0030 Nicotiana tabacum HOM05D003146 ORTHO05D001819 3.0e-06 56.2 154 31.2
QL04p005594 Quercus lobata HOM05D003146 ORTHO05D001819 3.0e-06 56.2 141 29.1
CSS0020686 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 4.0e-06 55.8 176 26.7
Cpa.g.sc9.25 Carica papaya HOM05D001578 ORTHO05D001207 4.0e-06 55.8 148 27.7
FAN07G0539 Fragaria x ananassa HOM05D001578 ORTHO05D001207 4.0e-06 55.8 150 28.0
BraA06t26077Z Brassica rapa HOM05D004113 ORTHO05D005233 5.2e-06 55.5 146 30.8
TAR362G0027 Trochodendron aralioides HOM05D008339 ORTHO05D009712 5.2e-06 55.5 180 27.8
AL8G42030 Arabidopsis lyrata HOM05D004113 ORTHO05D005233 6.8e-06 55.1 178 27.5
CDE06G2513 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 6.8e-06 55.1 152 26.3
Duzib177G0524 Durio zibethinus HOM05D001578 ORTHO05D001207 6.8e-06 55.1 160 28.8
Gohir.A05G275500 Gossypium hirsutum HOM05D001578 ORTHO05D001207 8.8e-06 54.7 146 28.1
RcHm_v2.0_Chr4g0426481 Rosa chinensis HOM05D001578 ORTHO05D001207 8.8e-06 54.7 148 31.1
TWI14G0207 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 8.8e-06 54.7 153 28.1
TAR636G0184 Trochodendron aralioides HOM05D004113 ORTHO05D005233 8.8e-06 54.7 173 26.6


User provided reference genes

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