Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 2.3e-207 725.3 364 100.0
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 9.6e-206 719.9 364 99.5
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 9.8e-150 533.9 373 76.9
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 2.7e-147 525.8 367 74.7
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 2.4e-140 502.7 363 72.5
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 9.8e-134 480.7 362 71.5
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 1.7e-133 479.9 384 69.0
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 6.0e-131 471.5 366 68.0
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 1.3e-130 470.3 370 72.2
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 2.0e-126 456.4 383 68.1
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.0e-126 456.4 377 68.4
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.2e-125 453.0 384 67.4
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 2.2e-125 453.0 381 68.5
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.9e-125 452.6 383 68.1
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 3.7e-125 452.2 373 67.0
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 4.1e-124 448.7 383 67.1
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.2e-123 447.2 360 67.5
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 3.5e-123 445.7 369 69.4
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 8.6e-122 441.0 372 67.2
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 2.4e-119 433.0 369 66.7
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 3.1e-119 432.6 381 66.1
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 9.9e-118 427.6 384 63.5
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.9e-117 426.0 372 65.6
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.9e-117 426.0 372 65.6
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 6.4e-117 424.9 351 65.5
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.1e-116 424.1 371 66.0
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 4.2e-116 422.2 364 65.1
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 1.2e-115 420.6 358 66.5
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.6e-115 420.2 365 65.2
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 2.5e-113 412.9 385 63.4
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 5.6e-113 411.8 376 61.2
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.2e-110 404.1 370 63.5
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 1.5e-110 403.7 380 61.6
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 9.9e-110 401.0 373 62.5
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 1.4e-108 397.1 385 61.6
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 4.2e-108 395.6 364 62.1
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 7.1e-108 394.8 375 60.5
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 6.2e-104 381.7 396 59.1
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 8.1e-104 381.3 366 60.4
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 4.0e-103 379.0 389 58.9
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 4.2e-100 369.0 442 50.5
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 9.3e-100 367.9 340 64.1
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 1.5e-97 360.5 370 56.8
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 1.5e-97 360.5 353 58.1
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 5.6e-97 358.6 368 59.0
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 7.4e-97 358.2 387 57.6
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 4.5e-94 349.0 386 56.5
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 1.4e-92 344.0 365 58.4
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 1.9e-92 343.6 386 56.7
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 2.5e-92 343.2 370 57.3
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 7.9e-91 338.2 387 54.5
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 1.5e-89 334.0 390 53.1
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 1.9e-89 333.6 381 54.1
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 3.3e-89 332.8 373 51.2
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 1.6e-88 330.5 370 52.4
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 1.6e-88 330.5 393 50.1
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 2.1e-88 330.1 377 50.7
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.4e-87 327.4 376 51.6
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 1.8e-87 327.0 368 51.9
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 1.5e-86 323.9 373 51.2
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 2.0e-86 323.6 363 51.8
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 4.5e-86 322.4 363 51.5
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 4.9e-85 318.9 374 50.5
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 1.4e-84 317.4 369 51.2
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.9e-84 317.0 384 50.8
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 5.5e-84 315.5 366 53.6
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 9.3e-84 314.7 379 52.0
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 9.3e-84 314.7 375 50.9
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 9.3e-84 314.7 386 50.5
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 1.6e-83 313.9 391 51.2
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 7.9e-83 311.6 369 50.4
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 1.3e-82 310.8 367 50.1
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.3e-82 310.8 371 51.8
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 6.7e-82 308.5 395 49.9
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.3e-81 306.2 366 52.5
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 4.3e-81 305.8 367 49.3
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 9.7e-81 304.7 373 51.2
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 1.3e-80 304.3 375 49.9
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 1.6e-80 303.9 375 49.9
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 3.7e-80 302.8 375 49.9
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 1.8e-79 300.4 381 50.1
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 4.1e-79 299.3 367 49.9
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 4.5e-78 295.8 395 48.4
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 4.5e-78 295.8 389 48.1
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 1.1e-76 291.2 335 52.8
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 1.4e-76 290.8 433 46.7
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 1.6e-75 287.3 394 45.7
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 3.6e-75 286.2 363 52.1
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 6.1e-75 285.4 378 49.7
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 3.0e-74 283.1 360 51.4
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 6.7e-74 282.0 378 47.9
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 8.8e-74 281.6 422 47.2
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 1.5e-73 280.8 381 48.3
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.7e-72 277.3 337 50.7
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 3.4e-70 269.6 275 57.8
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 6.1e-67 258.8 406 46.1
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 6.1e-67 258.8 351 48.7
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 3.9e-66 256.1 203 67.5
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 5.3e-63 245.7 365 45.5
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 8.5e-61 238.4 389 42.9
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 2.3e-58 230.3 376 42.8
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 2.3e-58 230.3 369 39.0
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 3.0e-58 229.9 303 50.2
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 5.7e-57 225.7 352 44.6
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 6.3e-56 222.2 275 55.3
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 3.1e-55 219.9 377 41.9
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 9.1e-55 218.4 241 58.1
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 4.5e-54 216.1 281 49.8
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 2.2e-53 213.8 377 39.5
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 2.5e-52 210.3 369 41.7
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 1.0e-50 204.9 188 56.9
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 1.0e-50 204.9 358 41.3
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 8.3e-48 195.3 198 56.1
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 9.1e-47 191.8 192 56.2
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 4.5e-46 189.5 338 40.5
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 1.1e-44 184.9 133 72.9
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 1.5e-41 174.5 231 47.6
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 5.7e-41 172.6 135 58.5
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 7.5e-41 172.2 356 36.0
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 3.1e-39 166.8 378 34.9
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 1.2e-38 164.9 363 35.0
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 3.5e-38 163.3 351 35.6
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 2.3e-37 160.6 358 36.3
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 3.8e-37 159.8 366 35.2
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 1.6e-35 154.5 247 45.7
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 1.4e-31 141.4 183 47.5
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 1.6e-30 137.9 112 68.8
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 2.9e-24 117.1 115 59.1
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 1.7e-21 107.8 163 42.9
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 5.0e-21 106.3 150 43.3
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 2.8e-19 100.5 187 40.1
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.3e-18 97.4 159 39.0
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 4.4e-17 93.2 157 38.2
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.6e-14 84.7 158 36.1
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.7e-14 84.0 160 31.9
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 3.5e-14 83.6 358 27.7
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 3.5e-14 83.6 100 44.0
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.1e-12 78.6 159 31.4
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 1.3e-08 65.1 98 48.0
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 4.9e-08 63.2 155 31.0
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 4.9e-08 63.2 155 31.0
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 4.9e-08 63.2 155 31.0
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 4.9e-08 63.2 155 31.0
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 4.9e-08 63.2 155 31.0
Nitab4.5_0001664g0080 Nicotiana tabacum HOM05D001735 ORTHO05D001640 6.4e-08 62.8 224 29.9
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 6.4e-08 62.8 155 30.3
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 1.1e-07 62.0 155 30.3
SMO367G1253 Selaginella moellendorffii HOM05D005715 ORTHO05D007160 1.9e-07 61.2 229 25.3
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 2.4e-07 60.8 155 30.3
Nitab4.5_0010847g0010 Nicotiana tabacum HOM05D001735 ORTHO05D001640 4.1e-07 60.1 228 30.3
CSS0016125 Camellia sinensis var. sinensis HOM05D001735 ORTHO05D001640 7.1e-07 59.3 154 30.5
Rhsim12G0172700 Rhododendron simsii HOM05D001735 ORTHO05D001640 7.1e-07 59.3 153 27.5
Actinidia08859 Actinidia chinensis HOM05D001735 ORTHO05D001640 9.2e-07 58.9 154 27.9
PGSC0003DMG400015196 Solanum tuberosum HOM05D001735 ORTHO05D001640 9.2e-07 58.9 214 29.0
CAN.G352.44 Capsicum annuum HOM05D001735 ORTHO05D001640 1.2e-06 58.5 165 32.1
Sopen03g030250 Solanum pennellii HOM05D001735 ORTHO05D001640 1.6e-06 58.2 174 33.3
CDE04G1528 Ceratophyllum demersum HOM05D001735 ORTHO05D001640 2.1e-06 57.8 153 27.5
Dinv07827 Davidia involucrata HOM05D005715 ORTHO05D007160 2.1e-06 57.8 102 41.2
Solyc03g111100.1 Solanum lycopersicum HOM05D001735 ORTHO05D001640 2.7e-06 57.4 169 31.4
Aqoxy5G03520 Aquilegia oxysepala HOM05D001735 ORTHO05D001640 4.6e-06 56.6 163 26.4
Peaxi162Scf00089g00038 Petunia axillaris HOM05D001735 ORTHO05D001640 4.6e-06 56.6 361 26.3
TAR374G1031 Trochodendron aralioides HOM05D001735 ORTHO05D001640 4.6e-06 56.6 141 27.7
Dinv04851 Davidia involucrata HOM05D001735 ORTHO05D001640 6.0e-06 56.2 225 24.9


User provided reference genes

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