Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 0.0e+00 2488.8 1466 100.0
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 0.0e+00 1654.4 1466 69.0
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 0.0e+00 1585.9 1466 66.9
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 0.0e+00 1119.4 888 68.0
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 5.1e-274 948.7 1681 45.4
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 1.1e-268 931.0 1692 43.8
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 5.0e-261 905.6 1611 46.0
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 1.8e-255 887.1 1604 46.4
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 1.2e-254 884.4 963 55.3
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 1.5e-252 877.5 1698 40.3
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.3e-250 870.2 1530 46.3
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.5e-244 850.9 1547 45.4
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 2.2e-240 837.0 1233 44.9
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 6.4e-232 808.9 1537 43.8
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 8.3e-232 808.5 1172 44.2
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 1.7e-229 800.8 1104 46.0
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 2.0e-225 787.3 1484 46.3
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.1e-223 781.6 1131 44.6
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 3.2e-223 780.0 1501 46.9
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 4.6e-222 776.2 1710 36.0
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 3.0e-221 773.5 1509 41.6
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.9e-221 773.1 1537 44.1
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.8e-218 764.2 1492 41.2
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 9.2e-215 751.9 1499 41.8
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 2.1e-214 750.7 1510 44.1
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 9.5e-212 741.9 1563 43.7
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 2.3e-210 737.3 882 50.9
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 6.8e-210 735.7 1500 43.3
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 1.7e-208 731.1 1571 44.2
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 1.0e-205 721.8 1579 40.5
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.5e-204 718.0 1493 41.9
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 4.4e-201 706.4 1540 42.7
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 9.3e-199 698.7 1549 41.4
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.6e-198 698.0 1545 44.6
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 1.0e-197 695.3 1148 43.9
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.3e-197 694.1 1543 42.1
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.0e-189 668.7 1202 39.7
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 3.3e-188 663.7 1472 41.0
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 4.8e-187 659.8 1521 40.6
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 9.9e-185 652.1 1598 41.6
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 6.4e-184 649.4 869 45.8
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 2.4e-183 647.5 1199 39.1
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 1.8e-181 641.3 1554 40.3
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 2.8e-179 634.0 1475 39.4
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 6.9e-178 629.4 1524 36.7
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 2.2e-176 624.4 845 45.1
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 3.0e-173 614.0 1523 36.9
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 6.3e-171 606.3 839 45.1
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.8e-170 604.7 706 48.9
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 3.1e-170 604.0 1066 40.3
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 3.3e-164 583.9 1509 34.7
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 3.1e-162 577.4 1487 35.1
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 5.9e-161 573.2 1561 37.1
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 2.9e-160 570.9 1098 38.1
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 1.9e-159 568.2 1213 37.8
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 4.3e-156 557.0 1220 35.7
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 7.4e-148 529.6 1234 37.0
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 1.7e-147 528.5 1494 38.2
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 3.7e-147 527.3 1476 37.4
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 2.0e-145 521.5 1539 36.8
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 2.2e-144 518.1 1457 34.8
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 5.5e-143 513.5 1479 33.8
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 1.6e-142 511.9 1504 37.6
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 7.5e-140 503.1 1462 34.7
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.4e-138 498.0 1098 38.0
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 9.1e-138 496.1 1545 34.2
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 3.5e-137 494.2 1490 39.2
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 1.0e-136 492.7 1468 34.8
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 1.0e-136 492.7 1468 34.9
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 1.0e-136 492.7 1476 31.8
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 2.2e-136 491.5 1470 34.8
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 7.2e-135 486.5 824 40.9
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 7.2e-135 486.5 1471 34.4
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.7e-134 484.6 1633 31.6
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 2.7e-134 484.6 1464 33.7
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 1.8e-130 471.9 1479 31.2
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 5.4e-130 470.3 1007 36.3
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 1.2e-129 469.2 906 38.1
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 3.5e-129 467.6 1468 32.8
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 5.9e-121 440.3 1465 38.0
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 7.3e-119 433.3 1472 30.3
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 3.4e-116 424.5 1453 34.5
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 1.8e-114 418.7 1528 34.2
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 6.6e-112 410.2 1393 34.5
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 6.6e-112 410.2 967 33.8
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 1.9e-111 408.7 1616 28.5
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 1.2e-110 406.0 1142 32.9
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 2.0e-105 388.7 1468 28.3
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 6.0e-105 387.1 1062 30.1
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 9.5e-103 379.8 1170 29.5
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 3.6e-102 377.9 1239 29.2
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 1.1e-101 376.3 1079 31.6
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 1.9e-98 365.5 1176 29.3
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 1.3e-96 359.4 846 33.0
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 2.1e-94 352.1 798 33.3
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 3.6e-94 351.3 1102 30.4
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 4.0e-93 347.8 807 34.8
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 8.9e-93 346.7 905 33.6
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 1.2e-92 346.3 1346 33.3
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 1.3e-88 332.8 1503 29.9
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 3.0e-88 331.6 1510 28.5
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 8.9e-85 320.1 1153 27.9
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 1.1e-82 313.2 1569 28.5
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 1.9e-82 312.4 763 33.0
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 3.5e-73 281.6 1222 32.1
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 3.5e-73 281.6 1560 30.2
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 7.9e-73 280.4 1023 37.8
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.0e-68 265.8 446 39.9
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.6e-68 265.4 446 39.9
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.6e-68 265.4 446 39.9
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 4.2e-66 258.1 237 58.2
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 4.8e-54 218.0 289 45.3
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 9.3e-50 203.8 296 43.2
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 8.7e-48 197.2 555 47.6
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 1.2e-44 186.8 524 32.1
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 2.3e-40 172.6 491 60.1
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 2.3e-40 172.6 469 30.9
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 1.1e-37 163.7 1140 24.3
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.4e-37 163.3 565 28.0
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 6.5e-35 154.5 160 53.1
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 2.5e-34 152.5 335 34.9
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 4.7e-33 148.3 334 34.7
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 5.2e-32 144.8 335 33.7
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 2.6e-31 142.5 400 30.8
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 2.4e-29 136.0 149 53.0
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 3.1e-29 135.6 1033 22.9
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 2.5e-26 125.9 1158 23.4
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 5.5e-26 124.8 272 32.4
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 1.6e-25 123.2 374 28.3
Aqoxy7G00168 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 1.0e-24 120.6 319 33.2
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.4e-24 120.2 120 54.2
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 3.0e-24 119.0 136 47.1
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 8.8e-24 117.5 150 39.3
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 9.7e-23 114.0 203 34.0
Lalb_Chr15g0088861 Lupinus albus HOM05D005129 ORTHO05D005585 7.7e-20 104.4 508 32.5
Aa31LG10G6530 Aethionema arabicum HOM05D005129 ORTHO05D005585 2.5e-18 99.4 162 41.4
PSO675G1291 Papaver somniferum HOM05D005129 ORTHO05D005585 9.4e-18 97.4 119 48.7
PSO541G6300 Papaver somniferum HOM05D005129 ORTHO05D005585 3.6e-17 95.5 120 46.7
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 5.2e-16 91.7 115 49.6
Carub.0004s1646 Capsella rubella HOM05D005129 ORTHO05D005585 3.4e-15 89.0 581 31.8
TPR.G125 Trifolium pratense HOM05D005129 ORTHO05D005585 8.3e-14 84.3 87 51.7
Sopen07g020710 Solanum pennellii HOM05D005129 ORTHO05D005585 1.4e-13 83.6 117 43.6
SEGI_31962 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 4.5e-12 78.6 358 25.7
FAN25G0646 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.0e-11 77.4 173 41.6
PSO675G3866 Papaver somniferum HOM05D026995 ORTHO05D005585 1.3e-11 77.0 150 42.7
PSO541G4161 Papaver somniferum HOM05D026995 ORTHO05D005585 1.5e-10 73.6 203 33.5
VMungo1080G1105 Vigna mungo HOM05D000424 ORTHO05D002854 1.5e-10 73.6 82 48.8
Lj6g0015855 Lotus japonicus HOM05D005129 ORTHO05D005585 8.0e-09 67.8 190 32.1
Aqoxy2G01760 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 8.9e-08 64.3 88 42.0
DCAR_005756 Daucus carota HOM05D005129 ORTHO05D005585 8.9e-08 64.3 226 29.2
PSO675G2011 Papaver somniferum HOM05D026995 ORTHO05D005585 5.7e-07 61.6 71 46.5
Medtr7g451470 Medicago truncatula HOM05D002737 ORTHO05D009499 1.3e-06 60.5 224 27.7
PSO541G0381 Papaver somniferum HOM05D026995 ORTHO05D005585 6.3e-06 58.2 71 45.1


User provided reference genes

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