Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p063602 Quercus lobata HOM05D004559 ORTHO05D005283 7.4e-53 210.3 109 100.0
QL05p058743 Quercus lobata HOM05D004559 ORTHO05D005283 1.4e-43 179.5 117 83.8
CiPaw.09G125100 Carya illinoinensis HOM05D004559 ORTHO05D005283 2.7e-34 148.7 112 71.4
Nn3g20736 Nelumbo nucifera HOM05D004559 ORTHO05D005283 1.9e-32 142.5 113 68.1
Cfa000955 Carpinus fangiana HOM05D004559 ORTHO05D005283 2.5e-32 142.1 113 69.0
Haze_05570 Corylus avellana HOM05D004559 ORTHO05D005283 2.5e-32 142.1 113 69.0
MELO3C007140.2 Cucumis melo HOM05D004559 ORTHO05D005283 1.0e-30 136.7 112 65.2
CsaV3_6G051670 Cucumis sativus L. HOM05D004559 ORTHO05D005283 1.4e-30 136.3 112 65.2
PGR083G1233 Punica granatum HOM05D004559 ORTHO05D005283 1.8e-30 136.0 112 64.3
ClCG01G024550 Citrullus lanatus HOM05D004559 ORTHO05D005283 2.3e-30 135.6 112 64.3
Prupe.4G079400 Prunus persica HOM05D004559 ORTHO05D005283 6.8e-30 134.0 107 66.4
QL04p024505 Quercus lobata HOM05D004559 ORTHO05D005283 6.8e-30 134.0 101 77.2
arahy.Tifrunner.gnm1.ann1.5ZLV04 Arachis hypogaea HOM05D004559 ORTHO05D005283 8.8e-30 133.7 113 60.2
arahy.Tifrunner.gnm1.ann1.64U7NV Arachis hypogaea HOM05D004559 ORTHO05D005283 8.8e-30 133.7 113 60.2
Lalb_Chr18g0055551 Lupinus albus HOM05D004559 ORTHO05D005283 1.2e-29 133.3 113 61.9
Gorai.009G155800 Gossypium raimondii HOM05D004559 ORTHO05D005283 1.5e-29 132.9 111 64.0
TAR626G0687 Trochodendron aralioides HOM05D004559 ORTHO05D005283 1.5e-29 132.9 112 61.6
Gohir.D05G151600 Gossypium hirsutum HOM05D004559 ORTHO05D005283 2.0e-29 132.5 111 63.1
Psat1g190840 Pisum sativum HOM05D004559 ORTHO05D005283 2.0e-29 132.5 112 61.6
RcHm_v2.0_Chr5g0013841 Rosa chinensis HOM05D004559 ORTHO05D005283 2.0e-29 132.5 109 67.0
Gohir.A05G149200 Gossypium hirsutum HOM05D004559 ORTHO05D005283 4.4e-29 131.3 111 63.1
Medtr2g019640 Medicago truncatula HOM05D004559 ORTHO05D005283 4.4e-29 131.3 112 61.6
TPR.G35511 Trifolium pratense HOM05D004559 ORTHO05D005283 4.4e-29 131.3 113 62.8
Ca_00552_v3 Cicer arietinum L. HOM05D004559 ORTHO05D005283 5.7e-29 131.0 112 60.7
Gohir.A05G149100 Gossypium hirsutum HOM05D004559 ORTHO05D005283 5.7e-29 131.0 111 63.1
HanXRQChr04g0118611 Helianthus annuus HOM05D004559 ORTHO05D005283 5.7e-29 131.0 112 59.8
Gohir.D05G151700 Gossypium hirsutum HOM05D004559 ORTHO05D005283 7.5e-29 130.6 111 63.1
Lsat_1_v5_gn_7_30060 Lactuca sativa HOM05D004559 ORTHO05D005283 7.5e-29 130.6 113 58.4
Thecc.06G152000 Theobroma cacao HOM05D004559 ORTHO05D005283 7.5e-29 130.6 111 64.0
FAN21G2502 Fragaria x ananassa HOM05D004559 ORTHO05D005283 9.8e-29 130.2 107 66.4
Aqoxy4G00090 Aquilegia oxysepala HOM05D004559 ORTHO05D005283 1.3e-28 129.8 108 62.0
Eucgr.D00302 Eucalyptus grandis HOM05D004559 ORTHO05D005283 1.3e-28 129.8 112 62.5
Lj6g0026599 Lotus japonicus HOM05D004559 ORTHO05D005283 1.3e-28 129.8 112 60.7
Manes.01G172800 Manihot esculenta HOM05D004559 ORTHO05D005283 1.3e-28 129.8 112 58.9
VMungo0540G1851 Vigna mungo HOM05D004559 ORTHO05D005283 1.3e-28 129.8 112 60.7
Aqoxy1G04198 Aquilegia oxysepala HOM05D004559 ORTHO05D005283 1.7e-28 129.4 113 60.2
COL.COLO4_31091 Corchorus olitorius HOM05D004559 ORTHO05D005283 2.2e-28 129.0 111 64.0
FAN16G3572 Fragaria x ananassa HOM05D004559 ORTHO05D005283 2.2e-28 129.0 107 66.4
FAN25G1224 Fragaria x ananassa HOM05D004559 ORTHO05D005283 2.2e-28 129.0 103 64.1
CDE09G0977 Ceratophyllum demersum HOM05D004559 ORTHO05D005283 2.8e-28 128.6 110 61.8
CDE02G1201 Ceratophyllum demersum HOM05D004559 ORTHO05D005283 3.7e-28 128.3 113 61.1
Glyma.13G217400 Glycine max HOM05D004559 ORTHO05D005283 3.7e-28 128.3 112 61.6
Phvul.006G163800 Phaseolus vulgaris HOM05D004559 ORTHO05D005283 3.7e-28 128.3 112 60.7
TWI73G0246 Tripterygium wilfordii HOM05D004559 ORTHO05D005283 3.7e-28 128.3 112 58.0
Ciclev10014973m.g Citrus clementina HOM05D004559 ORTHO05D005283 4.8e-28 127.9 112 62.5
FvH4_3g05750 Fragaria vesca HOM05D004559 ORTHO05D005283 6.3e-28 127.5 107 65.4
FAN11G0428 Fragaria x ananassa HOM05D004559 ORTHO05D005283 8.3e-28 127.1 107 64.5
Sed0018301 Sechium edule HOM05D004559 ORTHO05D005283 1.1e-27 126.7 112 60.7
Gorai.009G155600 Gossypium raimondii HOM05D004559 ORTHO05D005283 1.4e-27 126.3 111 60.4
MBI10_g02219_MAGBIO Magnolia biondii HOM05D004559 ORTHO05D005283 1.4e-27 126.3 112 60.7
Glyma.15G095000 Glycine max HOM05D004559 ORTHO05D005283 1.8e-27 125.9 109 60.6
DCAR_027922 Daucus carota HOM05D004559 ORTHO05D005283 2.4e-27 125.6 113 59.3
Lalb_Chr18g0055541 Lupinus albus HOM05D004559 ORTHO05D005283 3.1e-27 125.2 115 56.5
Manes.02G132100 Manihot esculenta HOM05D004559 ORTHO05D005283 5.4e-27 124.4 112 57.1
THA.LOC104814293 Tarenaya hassleriana HOM05D004559 ORTHO05D005283 7.0e-27 124.0 111 61.3
ECA236G2101 Erigeron canadensis HOM05D004559 ORTHO05D005283 1.2e-26 123.2 113 57.5
Lj6g0003176 Lotus japonicus HOM05D004559 ORTHO05D005283 1.6e-26 122.9 112 57.1
Duzib192G1007 Durio zibethinus HOM05D004559 ORTHO05D005283 2.7e-26 122.1 109 59.6
Potri.004G131700 Populus trichocarpa HOM05D004559 ORTHO05D005283 3.5e-26 121.7 112 58.9
Duzib235G0428 Durio zibethinus HOM05D004559 ORTHO05D005283 1.3e-25 119.8 106 61.3
Gohir.D06G142200 Gossypium hirsutum HOM05D004559 ORTHO05D005283 1.3e-25 119.8 111 59.5
Rhsim13G0194400 Rhododendron simsii HOM05D004559 ORTHO05D005283 1.3e-25 119.8 114 57.0
CSS0018950 Camellia sinensis var. sinensis HOM05D004559 ORTHO05D005283 2.3e-25 119.0 114 56.1
CARHR128580 Cardamine hirsuta HOM05D004559 ORTHO05D005283 2.9e-25 118.6 112 59.8
Gohir.A06G137102 Gossypium hirsutum HOM05D004559 ORTHO05D005283 2.9e-25 118.6 110 58.2
Aa31LG10G6900 Aethionema arabicum HOM05D004559 ORTHO05D005283 5.0e-25 117.9 111 59.5
BcaC02g11512 Brassica carinata HOM05D004559 ORTHO05D005283 5.0e-25 117.9 111 60.4
C04p14530 Brassica napus HOM05D004559 ORTHO05D005283 5.0e-25 117.9 111 60.4
CARHR128590 Cardamine hirsuta HOM05D004559 ORTHO05D005283 5.0e-25 117.9 111 61.3
Cpa.g.sc166.19 Carica papaya HOM05D004559 ORTHO05D005283 5.0e-25 117.9 112 57.1
Sp4g16760 Schrenkiella parvula HOM05D004559 ORTHO05D005283 8.6e-25 117.1 112 60.7
AT2G34490 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 1.1e-24 116.7 112 58.0
Carub.0004s1616 Capsella rubella HOM05D004559 ORTHO05D005283 1.1e-24 116.7 112 58.0
Gorai.010G166000 Gossypium raimondii HOM05D004559 ORTHO05D005283 1.1e-24 116.7 111 57.7
PSO732G0295 Papaver somniferum HOM05D004559 ORTHO05D005283 1.1e-24 116.7 111 53.2
HanXRQChr15g0480071 Helianthus annuus HOM05D004559 ORTHO05D005283 1.5e-24 116.3 115 55.7
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 1.5e-24 116.3 100 61.0
Ah.14g086460 Amaranthus hybridus HOM05D001706 ORTHO05D005283 2.5e-24 115.5 115 58.3
AT2G34500 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 2.5e-24 115.5 111 59.5
CAN.G650.2 Capsicum annuum HOM05D004559 ORTHO05D005283 2.5e-24 115.5 114 53.5
Oeu034159.1 Olea europaea HOM05D004559 ORTHO05D005283 2.5e-24 115.5 110 53.6
Atru.chr10.1255 Acer truncatum HOM05D004559 ORTHO05D005283 3.3e-24 115.2 113 55.8
Gorai.010G166100 Gossypium raimondii HOM05D004559 ORTHO05D005283 3.3e-24 115.2 111 56.8
PSO407G0284 Papaver somniferum HOM05D004559 ORTHO05D005283 3.3e-24 115.2 110 54.5
EL10Ac8g19728 Beta vulgaris HOM05D004559 ORTHO05D005283 4.2e-24 114.8 117 55.6
Os01g0211200 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 5.5e-24 114.4 113 54.0
Os01g0211600 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 5.5e-24 114.4 112 55.4
PSO170G5325 Papaver somniferum HOM05D004559 ORTHO05D005283 5.5e-24 114.4 110 53.6
BcaB06g28777 Brassica carinata HOM05D004559 ORTHO05D005283 7.2e-24 114.0 111 58.6
A05p11180 Brassica napus HOM05D004559 ORTHO05D005283 7.2e-24 114.0 111 58.6
BolC4t23036H Brassica oleracea HOM05D004559 ORTHO05D005283 7.2e-24 114.0 111 57.7
BraA05t20064Z Brassica rapa HOM05D004559 ORTHO05D005283 7.2e-24 114.0 111 58.6
Thhalv10016552m.g Eutrema salsugineum HOM05D004559 ORTHO05D005283 7.2e-24 114.0 112 58.9
AL4G30470 Arabidopsis lyrata HOM05D004559 ORTHO05D005283 9.5e-24 113.6 111 58.6
Sc17g0004960 Simmondsia chinensis HOM05D004559 ORTHO05D005283 9.5e-24 113.6 113 59.3
Carub.0004s1617 Capsella rubella HOM05D004559 ORTHO05D005283 1.2e-23 113.2 111 57.7
BcaB02g09537 Brassica carinata HOM05D004559 ORTHO05D005283 1.6e-23 112.8 112 58.9
Ah.09g232660 Amaranthus hybridus HOM05D004559 ORTHO05D005283 2.1e-23 112.5 115 58.3
MD05G1285000 Malus domestica HOM05D004559 ORTHO05D005283 2.1e-23 112.5 106 58.5
AL4G30460 Arabidopsis lyrata HOM05D004559 ORTHO05D005283 3.6e-23 111.7 112 56.2
Thhalv10016547m.g Eutrema salsugineum HOM05D004559 ORTHO05D005283 4.7e-23 111.3 112 58.9
Cc09_g09430 Coffea canephora HOM05D004559 ORTHO05D005283 1.0e-22 110.2 117 49.6
MSTRG.14771 Avicennia marina HOM05D004559 ORTHO05D005283 1.4e-22 109.8 113 53.1
unitig_0.g931 Utricularia gibba HOM05D004559 ORTHO05D005283 1.4e-22 109.8 109 51.4
A04p26420 Brassica napus HOM05D004559 ORTHO05D005283 1.8e-22 109.4 112 58.9
C04p63830 Brassica napus HOM05D004559 ORTHO05D005283 1.8e-22 109.4 112 58.9
BraA04t18146Z Brassica rapa HOM05D004559 ORTHO05D005283 1.8e-22 109.4 112 58.9
PSO675G8299 Papaver somniferum HOM05D004559 ORTHO05D005283 1.8e-22 109.4 111 47.7
PGSC0003DMG400021157 Solanum tuberosum HOM05D004559 ORTHO05D005283 5.2e-22 107.8 114 50.0
BolC4t27851H Brassica oleracea HOM05D004559 ORTHO05D005283 6.8e-22 107.5 112 58.0
Solyc02g070580.1 Solanum lycopersicum HOM05D004559 ORTHO05D005283 6.8e-22 107.5 114 50.0
HPP92_024037 Vanilla planifolia HOM05D004559 ORTHO05D005283 6.8e-22 107.5 107 52.3
CARHR122010 Cardamine hirsuta HOM05D004559 ORTHO05D005283 1.2e-21 106.7 110 53.6
Peaxi162Scf01205g00119 Petunia axillaris HOM05D004559 ORTHO05D005283 1.2e-21 106.7 111 48.6
Sopen02g019670 Solanum pennellii HOM05D004559 ORTHO05D005283 2.0e-21 105.9 114 49.1
Nitab4.5_0004023g0020 Nicotiana tabacum HOM05D004559 ORTHO05D005283 3.4e-21 105.1 114 50.0
Os01g0211000 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 4.4e-21 104.8 112 50.9
Migut.H01366 Erythranthe guttata HOM05D004559 ORTHO05D005283 5.7e-21 104.4 113 47.8
HPP92_004048 Vanilla planifolia HOM05D004559 ORTHO05D005283 5.7e-21 104.4 107 51.4
Dinv32268 Davidia involucrata HOM05D006862 ORTHO05D005283 7.5e-21 104.0 107 54.2
Os01g0210900 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 7.5e-21 104.0 112 51.8
BcaB06g28776 Brassica carinata HOM05D004559 ORTHO05D005283 9.8e-21 103.6 111 54.1
AagrBONN_evm.TU.Sc2ySwM_344.5146 Anthoceros agrestis HOM05D004559 ORTHO05D005283 1.3e-20 103.2 116 52.6
AL4G23390 Arabidopsis lyrata HOM05D004559 ORTHO05D005283 2.8e-20 102.1 113 51.3
SalBow7G0183 Salvia bowleyana HOM05D004559 ORTHO05D005283 2.8e-20 102.1 105 51.4
HPP92_004055 Vanilla planifolia HOM05D004559 ORTHO05D005283 2.8e-20 102.1 107 50.5
ATR0044G015 Amborella trichopoda HOM05D004559 ORTHO05D005283 6.3e-20 100.9 116 52.6
AT2G28860 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 6.3e-20 100.9 111 49.5
AagrBONN_evm.TU.Sc2ySwM_344.1308 Anthoceros agrestis HOM05D004559 ORTHO05D005283 8.3e-20 100.5 112 50.9
Nitab4.5_0001755g0010 Nicotiana tabacum HOM05D004559 ORTHO05D005283 8.3e-20 100.5 114 46.5
Carub.0004s0985 Capsella rubella HOM05D004559 ORTHO05D005283 1.1e-19 100.1 111 50.5
SGA_v2.0_scaffold106G30645 Striga asiatica HOM05D004559 ORTHO05D005283 1.8e-19 99.4 115 47.8
AT2G28850 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 1.2e-18 96.7 111 50.5
AUR62018731 Chenopodium quinoa HOM05D004559 ORTHO05D005283 1.2e-18 96.7 76 69.7
SEGI_11062 Sequoiadendron giganteum HOM05D004559 ORTHO05D005283 2.7e-18 95.5 112 48.2
AUR62007268 Chenopodium quinoa HOM05D004559 ORTHO05D005283 4.5e-18 94.7 76 68.4
Pp3c2_27810 Physcomitrium patens HOM05D004559 ORTHO05D005283 8.6e-17 90.5 115 48.7
Pp3c1_11690 Physcomitrium patens HOM05D004559 ORTHO05D005283 2.5e-16 89.0 112 46.4
CAN.G170.28 Capsicum annuum HOM05D004559 ORTHO05D005283 5.6e-16 87.8 112 45.5
Mapoly0045s0151 Marchantia polymorpha HOM05D004559 ORTHO05D005283 2.3e-14 82.4 114 43.0
Mapoly0103s0038 Marchantia polymorpha HOM05D004559 ORTHO05D005283 6.8e-14 80.9 114 41.2
Cre11.g467527 Chlamydomonas reinhardtii HOM05D004559 ORTHO05D005283 4.4e-13 78.2 112 35.7
SMO367G0132 Selaginella moellendorffii HOM05D004559 ORTHO05D005283 4.4e-13 78.2 118 39.0
Nn8g41110 Nelumbo nucifera HOM05D004559 ORTHO05D005283 6.6e-09 64.3 66 56.1
PSO210G3360 Papaver somniferum HOM05D004559 ORTHO05D005283 8.6e-09 63.9 65 52.3
PRCOL_00005015 Prasinoderma coloniale HOM05D004559 ORTHO05D005283 6.2e-07 57.8 110 30.9
Nn3g21976 Nelumbo nucifera HOM05D004559 ORTHO05D005283 8.0e-07 57.4 47 57.4
Sabra04G0086100 Salix brachista HOM05D004559 ORTHO05D005283 1.4e-06 56.6 59 54.2


User provided reference genes

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