Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 1.8e-37 158.7 77 100.0
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 2.7e-25 118.2 78 75.6
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 2.3e-24 115.2 78 74.4
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 1.9e-23 112.1 79 72.2
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 1.4e-21 105.9 67 74.6
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 4.1e-21 104.4 77 66.2
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 5.3e-21 104.0 77 71.4
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 9.0e-21 103.2 77 70.1
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 1.2e-20 102.8 66 75.8
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 1.2e-20 102.8 77 68.8
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 1.5e-20 102.4 66 69.7
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 1.5e-20 102.4 75 70.7
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 2.0e-20 102.1 77 68.8
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 2.0e-20 102.1 80 67.5
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 2.6e-20 101.7 79 68.4
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 1.3e-19 99.4 69 69.6
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 1.7e-19 99.0 79 67.1
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 5.0e-19 97.4 73 64.4
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 8.5e-19 96.7 80 61.2
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 8.5e-19 96.7 66 71.2
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 1.9e-18 95.5 77 66.2
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 1.9e-18 95.5 77 66.2
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 3.2e-18 94.7 80 62.5
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 3.2e-18 94.7 69 66.7
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 5.5e-18 94.0 66 69.7
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 9.3e-18 93.2 64 68.8
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.2e-17 92.8 66 69.7
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 1.2e-17 92.8 73 68.5
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 2.1e-17 92.0 77 63.6
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 2.1e-17 92.0 77 61.0
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 2.1e-17 92.0 78 65.4
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 2.1e-17 92.0 50 80.0
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 2.1e-17 92.0 78 65.4
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 2.7e-17 91.7 77 61.0
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 2.7e-17 91.7 50 80.0
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 2.7e-17 91.7 50 82.0
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 3.6e-17 91.3 77 66.2
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 4.6e-17 90.9 66 66.7
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 4.6e-17 90.9 50 82.0
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 6.1e-17 90.5 66 68.2
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 1.3e-16 89.4 78 59.0
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 1.3e-16 89.4 77 63.6
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 1.8e-16 89.0 77 58.4
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 2.3e-16 88.6 77 59.7
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 3.0e-16 88.2 63 71.4
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 3.0e-16 88.2 78 66.7
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 3.0e-16 88.2 77 55.8
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 5.1e-16 87.4 78 60.3
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 5.1e-16 87.4 78 60.3
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 5.1e-16 87.4 77 59.7
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 6.7e-16 87.0 50 76.0
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 1.1e-15 86.3 85 55.3
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 1.9e-15 85.5 77 54.5
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 3.3e-15 84.7 77 53.2
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 3.3e-15 84.7 60 66.7
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 4.3e-15 84.3 79 58.2
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 4.3e-15 84.3 79 58.2
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 4.3e-15 84.3 77 57.1
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 4.3e-15 84.3 66 63.6
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 5.7e-15 84.0 77 57.1
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 5.7e-15 84.0 79 58.2
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 5.7e-15 84.0 79 58.2
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 5.7e-15 84.0 66 60.6
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 9.7e-15 83.2 77 55.8
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 1.6e-14 82.4 70 61.4
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 2.2e-14 82.0 62 61.3
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 3.7e-14 81.3 59 62.7
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 3.7e-14 81.3 59 62.7
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 6.3e-14 80.5 57 61.4
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 8.2e-14 80.1 46 76.1
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 8.2e-14 80.1 66 62.1
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 5.3e-13 77.4 66 56.1
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 5.9e-12 73.9 62 59.7
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 1.3e-11 72.8 49 67.3
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 1.3e-11 72.8 75 53.3
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 2.9e-11 71.6 49 67.3
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 8.5e-11 70.1 75 52.0
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 1.1e-10 69.7 40 65.0
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 3.2e-10 68.2 62 56.5
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 7.2e-10 67.0 62 53.2
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 9.4e-10 66.6 50 58.0
Nn7g37890 Nelumbo nucifera HOM05D021221 ORTHO05D025179 2.6e-07 58.5 70 52.9
Sed0025248 Sechium edule HOM05D066588 ORTHO05D010018 2.6e-07 58.5 49 61.2
Sabra18G0012600 Salix brachista HOM05D003482 ORTHO05D010018 2.2e-06 55.5 35 77.1
Phvul.001G177600 Phaseolus vulgaris HOM05D009309 ORTHO05D011491 6.3e-06 53.9 47 61.7
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 8.2e-06 53.5 48 58.3


User provided reference genes

Program Settings