Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p061674 Quercus lobata HOM05D007012 ORTHO05D008882 9.9e-83 310.1 157 100.0
QL05p061226 Quercus lobata HOM05D007012 ORTHO05D008882 4.2e-57 224.9 157 78.3
CiPaw.09G115600 Carya illinoinensis HOM05D007012 ORTHO05D008882 2.5e-49 199.1 155 71.6
Manes.14G122800 Manihot esculenta HOM05D007012 ORTHO05D008882 6.1e-48 194.5 155 67.7
vmacro03442 Vaccinium macrocarpon HOM05D007012 ORTHO05D008882 1.8e-47 193.0 155 67.7
Hma1.2p1_0333F.1_g128270 Hydrangea macrophylla HOM05D007012 ORTHO05D008882 3.9e-47 191.8 155 67.1
CiPaw.10G085800 Carya illinoinensis HOM05D007012 ORTHO05D008882 2.6e-46 189.1 155 69.0
Cc09_g08050 Coffea canephora HOM05D007012 ORTHO05D008882 2.6e-46 189.1 155 63.9
TWI73G0699 Tripterygium wilfordii HOM05D007012 ORTHO05D008882 7.4e-46 187.6 155 65.8
Eucgr.K01942 Eucalyptus grandis HOM05D007012 ORTHO05D008882 1.3e-45 186.8 155 65.2
CSS0014344 Camellia sinensis var. sinensis HOM05D007012 ORTHO05D008882 1.7e-45 186.4 155 65.2
Dinv35474 Davidia involucrata HOM05D007012 ORTHO05D008882 2.2e-45 186.0 155 63.9
RcHm_v2.0_Chr5g0015911 Rosa chinensis HOM05D007012 ORTHO05D008882 4.8e-45 184.9 154 66.9
Atru.chr10.869 Acer truncatum HOM05D007012 ORTHO05D008882 6.3e-45 184.5 151 65.6
Rhsim05G0222100 Rhododendron simsii HOM05D007012 ORTHO05D008882 2.4e-44 182.6 154 64.3
Actinidia03306 Actinidia chinensis HOM05D007012 ORTHO05D008882 3.1e-44 182.2 156 63.5
MD10G1253600 Malus domestica HOM05D007012 ORTHO05D008882 3.1e-44 182.2 154 65.6
TWI09G0010 Tripterygium wilfordii HOM05D007012 ORTHO05D008882 3.1e-44 182.2 155 65.2
Thecc.06G001300 Theobroma cacao HOM05D007012 ORTHO05D008882 4.1e-44 181.8 155 62.6
GSVIVG01021626001 Vitis vinifera HOM05D007012 ORTHO05D008882 4.1e-44 181.8 154 63.6
FvH4_3g10060 Fragaria vesca HOM05D007012 ORTHO05D008882 5.3e-44 181.4 153 66.0
FAN25G0029 Fragaria x ananassa HOM05D007012 ORTHO05D008882 5.3e-44 181.4 153 66.0
Peaxi162Scf00100g01517 Petunia axillaris HOM05D007012 ORTHO05D008882 5.3e-44 181.4 155 60.6
Ciclev10017190m.g Citrus clementina HOM05D007012 ORTHO05D008882 6.9e-44 181.0 155 63.2
PGR031G1292 Punica granatum HOM05D007012 ORTHO05D008882 6.9e-44 181.0 154 63.6
Sed0027179 Sechium edule HOM05D007012 ORTHO05D008882 6.9e-44 181.0 154 63.0
TAR629G2694 Trochodendron aralioides HOM05D007012 ORTHO05D008882 6.9e-44 181.0 155 63.9
Gohir.D06G213600 Gossypium hirsutum HOM05D007012 ORTHO05D008882 1.5e-43 179.9 157 63.1
Gorai.010G252500 Gossypium raimondii HOM05D007012 ORTHO05D008882 1.5e-43 179.9 157 63.1
CANSAT11G0200 Cannabis sativa HOM05D007012 ORTHO05D008882 3.4e-43 178.7 157 62.4
Nitab4.5_0001225g0050 Nicotiana tabacum HOM05D007012 ORTHO05D008882 3.4e-43 178.7 155 60.0
Prupe.4G090000 Prunus persica HOM05D007012 ORTHO05D008882 3.4e-43 178.7 155 63.2
ClCG02G000770 Citrullus lanatus HOM05D007012 ORTHO05D008882 4.5e-43 178.3 154 62.3
FAN21G1693 Fragaria x ananassa HOM05D007012 ORTHO05D008882 4.5e-43 178.3 153 64.7
Gohir.A06G207700 Gossypium hirsutum HOM05D007012 ORTHO05D008882 5.9e-43 177.9 157 62.4
Nitab4.5_0004615g0020 Nicotiana tabacum HOM05D007012 ORTHO05D008882 5.9e-43 177.9 155 60.0
MELO3C023274.2 Cucumis melo HOM05D007012 ORTHO05D008882 1.7e-42 176.4 154 61.7
Solyc02g069820.3 Solanum lycopersicum HOM05D007012 ORTHO05D008882 2.2e-42 176.0 155 60.0
Sopen02g018980 Solanum pennellii HOM05D007012 ORTHO05D008882 5.0e-42 174.9 155 60.0
PGSC0003DMG400021126 Solanum tuberosum HOM05D007012 ORTHO05D008882 8.5e-42 174.1 155 59.4
Lsat_1_v5_gn_1_117760 Lactuca sativa HOM05D007012 ORTHO05D008882 1.1e-41 173.7 155 60.6
HanXRQChr15g0468791 Helianthus annuus HOM05D007012 ORTHO05D008882 7.2e-41 171.0 151 61.6
SalBow8G4607 Salvia bowleyana HOM05D007012 ORTHO05D008882 9.4e-41 170.6 155 56.8
CAN.G1520.3 Capsicum annuum HOM05D007012 ORTHO05D008882 1.2e-40 170.2 151 59.6
MD05G1273800 Malus domestica HOM05D007012 ORTHO05D008882 1.6e-40 169.9 154 61.7
Potri.011G098200 Populus trichocarpa HOM05D007012 ORTHO05D008882 4.7e-40 168.3 150 62.7
arahy.Tifrunner.gnm1.ann1.80D497 Arachis hypogaea HOM05D007012 ORTHO05D008882 7.9e-40 167.5 157 56.1
arahy.Tifrunner.gnm1.ann1.HAVC5G Arachis hypogaea HOM05D007012 ORTHO05D008882 2.3e-39 166.0 156 55.8
Carub.0005s0786 Capsella rubella HOM05D007012 ORTHO05D008882 2.3e-39 166.0 150 57.3
Sabra11G0090900 Salix brachista HOM05D007012 ORTHO05D008882 3.0e-39 165.6 150 62.7
HPP92_000966 Vanilla planifolia HOM05D007012 ORTHO05D008882 3.0e-39 165.6 154 58.4
AL5G19030 Arabidopsis lyrata HOM05D007012 ORTHO05D008882 3.9e-39 165.2 150 58.7
Glyma.05G166500 Glycine max HOM05D007012 ORTHO05D008882 3.9e-39 165.2 153 54.9
PSO541G1654 Papaver somniferum HOM05D007012 ORTHO05D008882 3.9e-39 165.2 154 57.8
Thhalv10005148m.g Eutrema salsugineum HOM05D007012 ORTHO05D008882 5.2e-39 164.9 150 58.0
PSO675G5463 Papaver somniferum HOM05D007012 ORTHO05D008882 5.2e-39 164.9 154 58.4
CARHR152280 Cardamine hirsuta HOM05D007012 ORTHO05D008882 6.7e-39 164.5 150 58.7
Sp2g17760 Schrenkiella parvula HOM05D007012 ORTHO05D008882 6.7e-39 164.5 150 58.0
Sabra11G0084700 Salix brachista HOM05D007012 ORTHO05D008882 8.8e-39 164.1 150 62.0
BcaC06g30880 Brassica carinata HOM05D007012 ORTHO05D008882 1.5e-38 163.3 150 57.3
AUR62005835 Chenopodium quinoa HOM05D007012 ORTHO05D008882 2.0e-38 162.9 154 58.4
AUR62032828 Chenopodium quinoa HOM05D007012 ORTHO05D008882 2.0e-38 162.9 154 58.4
MSTRG.7536 Avicennia marina HOM05D007012 ORTHO05D008882 2.6e-38 162.5 155 56.1
Sc24g0001360 Simmondsia chinensis HOM05D007012 ORTHO05D008882 2.6e-38 162.5 154 59.1
Aa31LG2G4090 Aethionema arabicum HOM05D007012 ORTHO05D008882 3.3e-38 162.2 150 56.7
Ah.02g129420 Amaranthus hybridus HOM05D007012 ORTHO05D008882 7.4e-38 161.0 154 58.4
Migut.M00621 Erythranthe guttata HOM05D007012 ORTHO05D008882 7.4e-38 161.0 148 56.8
Lalb_Chr12g0204651 Lupinus albus HOM05D007012 ORTHO05D008882 9.7e-38 160.6 154 55.2
BcaC06g33671 Brassica carinata HOM05D007012 ORTHO05D008882 1.3e-37 160.2 150 56.0
C07p38010 Brassica napus HOM05D007012 ORTHO05D008882 1.3e-37 160.2 150 56.0
BolC7t44322H Brassica oleracea HOM05D007012 ORTHO05D008882 1.3e-37 160.2 150 56.0
Migut.M01889 Erythranthe guttata HOM05D007012 ORTHO05D008882 1.7e-37 159.8 155 54.8
SGA_v2.0_scaffold1G00245 Striga asiatica HOM05D007012 ORTHO05D008882 2.2e-37 159.5 155 54.8
Migut.M01890 Erythranthe guttata HOM05D007012 ORTHO05D008882 2.8e-37 159.1 153 54.9
Cfa000822 Carpinus fangiana HOM05D007012 ORTHO05D008882 3.7e-37 158.7 90 88.9
ECA248G1541 Erigeron canadensis HOM05D007012 ORTHO05D008882 6.3e-37 157.9 153 58.8
BraA06t26928Z Brassica rapa HOM05D007012 ORTHO05D008882 8.2e-37 157.5 173 49.7
Lj4g0006275 Lotus japonicus HOM05D007012 ORTHO05D008882 8.2e-37 157.5 148 55.4
Hma1.2p1_0333F.1_g128260 Hydrangea macrophylla HOM05D007012 ORTHO05D008882 1.8e-36 156.4 89 88.8
Phvul.002G246900 Phaseolus vulgaris HOM05D007012 ORTHO05D008882 1.8e-36 156.4 154 52.6
A06p40130 Brassica napus HOM05D007012 ORTHO05D008882 2.4e-36 156.0 150 54.7
THA.LOC104805486 Tarenaya hassleriana HOM05D007012 ORTHO05D008882 2.4e-36 156.0 154 54.5
EL10Ac6g13254 Beta vulgaris HOM05D007012 ORTHO05D008882 3.1e-36 155.6 152 57.9
TPR.G6804 Trifolium pratense HOM05D007012 ORTHO05D008882 4.1e-36 155.2 157 50.3
unitig_748.g7806 Utricularia gibba HOM05D007012 ORTHO05D008882 7.0e-36 154.5 151 53.6
Medtr8g088380 Medicago truncatula HOM05D007012 ORTHO05D008882 7.7e-35 151.0 153 49.7
Psat7g066160 Pisum sativum HOM05D007012 ORTHO05D008882 1.0e-34 150.6 155 49.0
Haze_05817 Corylus avellana HOM05D007012 ORTHO05D008882 1.3e-34 150.2 93 83.9
Hund20768 Selenicereus undatus HOM05D007012 ORTHO05D008882 1.7e-34 149.8 154 54.5
FAN11G2674 Fragaria x ananassa HOM05D007012 ORTHO05D008882 7.2e-33 144.4 89 83.1
FAN16G3160 Fragaria x ananassa HOM05D007012 ORTHO05D008882 9.4e-33 144.1 89 83.1
Oeu034103.1 Olea europaea HOM05D007012 ORTHO05D008882 6.1e-32 141.4 90 76.7
Sed0002894 Sechium edule HOM05D007012 ORTHO05D008882 6.1e-32 141.4 132 56.1
CDE08G0050 Ceratophyllum demersum HOM05D007012 ORTHO05D008882 1.4e-31 140.2 134 53.7
Os03g0640400 Oryza sativa ssp. japonica HOM05D007012 ORTHO05D008882 1.4e-31 140.2 154 50.0
Zm00001eb218740 Zea mays HOM05D007012 ORTHO05D008882 2.3e-31 139.4 153 49.0
CsaV3_2G017990 Cucumis sativus L. HOM05D007012 ORTHO05D008882 8.8e-31 137.5 89 76.4
Migut.M00618 Erythranthe guttata HOM05D007012 ORTHO05D008882 4.8e-29 131.7 137 51.1
SEGI_30962 Sequoiadendron giganteum HOM05D007012 ORTHO05D008882 3.1e-28 129.0 145 48.3
VMungo0251G0322 Vigna mungo HOM05D007012 ORTHO05D008882 5.3e-28 128.3 88 68.2
CDE08G0396 Ceratophyllum demersum HOM05D007012 ORTHO05D008882 1.2e-27 127.1 98 63.3
Aqoxy1G01570 Aquilegia oxysepala HOM05D007012 ORTHO05D008882 3.5e-27 125.6 91 70.3
AT3G29130 Arabidopsis thaliana HOM05D007012 ORTHO05D008882 2.2e-26 122.9 118 55.1
ATR0165G051 Amborella trichopoda HOM05D007012 ORTHO05D008882 1.4e-23 113.6 89 61.8
Pp3c17_18250 Physcomitrium patens HOM05D007012 ORTHO05D008882 8.8e-23 110.9 156 41.7
AagrBONN_evm.TU.Sc2ySwM_368.2441 Anthoceros agrestis HOM05D007012 ORTHO05D008882 1.2e-22 110.5 152 42.1
SEGI_05812 Sequoiadendron giganteum HOM05D007012 ORTHO05D008882 1.4e-20 103.6 134 44.0
Mapoly0001s0437 Marchantia polymorpha HOM05D007012 ORTHO05D008882 2.4e-20 102.8 151 35.8
CBR_g52649 Chara braunii HOM05D007012 ORTHO05D008882 5.4e-20 101.7 155 36.8
Glyma.08G124500 Glycine max HOM05D007012 ORTHO05D008882 6.5e-18 94.7 54 77.8
Migut.M00617 Erythranthe guttata HOM05D007012 ORTHO05D008882 1.5e-17 93.6 153 37.3
AagrBONN_evm.TU.Sc2ySwM_117.2140 Anthoceros agrestis HOM05D007012 ORTHO05D008882 1.0e-15 87.4 116 41.4
Nn3g20226 Nelumbo nucifera HOM05D007012 ORTHO05D008882 1.9e-09 66.6 152 33.6
QL05p061657 Quercus lobata HOM05D000041 ORTHO05D004120 5.2e-07 58.5 33 84.8
QL05p061260 Quercus lobata HOM05D000041 ORTHO05D337694 6.8e-07 58.2 31 87.1


User provided reference genes

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