Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p060720 Quercus lobata HOM05D009013 ORTHO05D009761 1.1e-172 610.1 375 100.0
Haze_05479 Corylus avellana HOM05D009013 ORTHO05D009761 9.0e-90 334.7 375 63.5
CiPaw.10G096600 Carya illinoinensis HOM05D009013 ORTHO05D009761 1.5e-84 317.4 381 54.1
Cfa001036 Carpinus fangiana HOM05D009013 ORTHO05D009761 3.1e-82 309.7 374 62.8
CiPaw.09G129900 Carya illinoinensis HOM05D009013 ORTHO05D009761 1.9e-76 290.4 545 40.4
Dinv03635 Davidia involucrata HOM05D009013 ORTHO05D009761 1.6e-46 191.0 394 38.6
Prupe.4G073200 Prunus persica HOM05D014736 ORTHO05D009761 1.3e-43 181.4 342 40.6
Ciclev10017480m.g Citrus clementina HOM05D009852 ORTHO05D009761 1.6e-41 174.5 375 42.1
TWI73G0525 Tripterygium wilfordii HOM05D009852 ORTHO05D009761 2.0e-41 174.1 387 40.8
Manes.15G116600 Manihot esculenta HOM05D009852 ORTHO05D009761 7.7e-41 172.2 420 39.5
Atru.chr10.1414 Acer truncatum HOM05D009852 ORTHO05D009761 3.4e-36 156.8 383 39.7
Potri.011G077700 Populus trichocarpa HOM05D009852 ORTHO05D009761 3.4e-36 156.8 390 37.4
Manes.17G064400 Manihot esculenta HOM05D009852 ORTHO05D009761 2.8e-35 153.7 426 38.0
CANSAT35G0309 Cannabis sativa HOM05D009013 ORTHO05D009761 7.7e-33 145.6 385 39.7
TWI09G1113 Tripterygium wilfordii HOM05D009852 ORTHO05D009761 1.0e-32 145.2 408 31.4
Lj4g0005206 Lotus japonicus HOM05D009013 ORTHO05D009761 1.7e-32 144.4 378 34.7
TWI09G0214 Tripterygium wilfordii HOM05D009852 ORTHO05D009761 3.8e-32 143.3 408 31.1
Potri.001G354600 Populus trichocarpa HOM05D009852 ORTHO05D009761 1.1e-31 141.7 380 38.7
Lalb_Chr07g0186121 Lupinus albus HOM05D009013 ORTHO05D009761 2.5e-31 140.6 377 35.5
Lalb_Chr12g0204801 Lupinus albus HOM05D009013 ORTHO05D009761 4.2e-31 139.8 384 33.3
Phvul.009G214600 Phaseolus vulgaris HOM05D009013 ORTHO05D009761 4.7e-30 136.3 377 34.7
Glyma.09G085700 Glycine max HOM05D009013 ORTHO05D009761 1.2e-28 131.7 382 36.1
CSS0045433 Camellia sinensis var. sinensis HOM05D014645 ORTHO05D009761 7.5e-28 129.0 491 30.3
Thecc.06G158200 Theobroma cacao HOM05D009852 ORTHO05D009761 7.0e-26 122.5 375 38.4
VMungo1309G2255 Vigna mungo HOM05D009013 ORTHO05D009761 7.0e-26 122.5 379 33.2
MD05G1292200 Malus domestica HOM05D014736 ORTHO05D009761 1.2e-25 121.7 271 39.1
Glyma.08G121600 Glycine max HOM05D009013 ORTHO05D009761 2.0e-25 120.9 381 33.6
Duzib192G0106 Durio zibethinus HOM05D009852 ORTHO05D009761 2.7e-25 120.6 375 38.1
Lalb_Chr13g0295461 Lupinus albus HOM05D009013 ORTHO05D009761 2.7e-25 120.6 324 31.2
MD10G1268000 Malus domestica HOM05D014736 ORTHO05D009761 5.9e-25 119.4 269 37.5
FAN11G2258 Fragaria x ananassa HOM05D014736 ORTHO05D009761 2.9e-24 117.1 146 46.6
Sabra16G0233200 Salix brachista HOM05D009852 ORTHO05D009761 6.6e-24 115.9 341 34.6
Sabra11G0072300 Salix brachista HOM05D009852 ORTHO05D009761 3.3e-23 113.6 405 33.8
Hma1.2p1_0015F.1_g010420 Hydrangea macrophylla HOM05D009013 ORTHO05D009761 4.2e-23 113.2 368 33.7
CSS0047309 Camellia sinensis var. sinensis HOM05D014645 ORTHO05D009761 7.2e-23 112.5 442 31.2
Gorai.009G158300 Gossypium raimondii HOM05D009852 ORTHO05D009761 2.1e-22 110.9 340 34.1
FAN25G1841 Fragaria x ananassa HOM05D014736 ORTHO05D009761 6.1e-22 109.4 437 34.1
Gohir.D05G154000 Gossypium hirsutum HOM05D009852 ORTHO05D009761 6.1e-22 109.4 340 33.8
Dinv32301 Davidia involucrata HOM05D009013 ORTHO05D009761 1.0e-21 108.6 276 42.8
Lalb_Chr23g0275971 Lupinus albus HOM05D009013 ORTHO05D009761 1.8e-21 107.8 385 31.2
TPR.G31355 Trifolium pratense HOM05D009013 ORTHO05D009761 1.5e-20 104.8 375 30.7
FAN21G2246 Fragaria x ananassa HOM05D014736 ORTHO05D009761 2.6e-20 104.0 433 33.3
Phvul.002G244200 Phaseolus vulgaris HOM05D009013 ORTHO05D009761 7.5e-20 102.4 380 30.3
Glyma.05G164200 Glycine max HOM05D009013 ORTHO05D009761 1.7e-19 101.3 382 29.8
FvH4_3g06440 Fragaria vesca HOM05D014736 ORTHO05D009761 2.2e-19 100.9 437 32.7
Duzib235G1088 Durio zibethinus HOM05D009852 ORTHO05D009761 4.9e-19 99.8 430 35.8
Duzib160G0535 Durio zibethinus HOM05D009852 ORTHO05D009761 8.3e-19 99.0 377 34.7
Oeu046855.1 Olea europaea HOM05D012266 ORTHO05D011876 1.1e-18 98.6 383 33.7
Lalb_Chr08g0233301 Lupinus albus HOM05D009013 ORTHO05D009761 1.4e-18 98.2 378 30.4
Sed0021783 Sechium edule HOM05D025335 ORTHO05D025087 1.4e-18 98.2 381 32.8
Oeu021526.1 Olea europaea HOM05D012266 ORTHO05D011876 5.4e-18 96.3 381 32.8
Gorai.010G164100 Gossypium raimondii HOM05D009852 ORTHO05D009761 9.2e-18 95.5 380 32.6
Gohir.A05G151600 Gossypium hirsutum HOM05D009852 ORTHO05D009761 1.2e-17 95.1 340 32.9
Glyma.15G195700 Glycine max HOM05D009013 ORTHO05D009761 2.7e-17 94.0 386 32.4
Lj6g0000102 Lotus japonicus HOM05D009013 ORTHO05D009761 5.9e-17 92.8 389 30.6
DCAR_007913 Daucus carota HOM05D009013 ORTHO05D009761 7.8e-17 92.4 317 30.6
Gohir.D06G140600 Gossypium hirsutum HOM05D009852 ORTHO05D009761 7.8e-17 92.4 380 32.1
Psat1g018200 Pisum sativum HOM05D009013 ORTHO05D009761 7.8e-17 92.4 375 27.7
VMungo0251G0903 Vigna mungo HOM05D009013 ORTHO05D009761 7.8e-17 92.4 376 29.3
Sed0003972 Sechium edule HOM05D025335 ORTHO05D025087 2.3e-16 90.9 347 29.7
MELO3C007172.2 Cucumis melo HOM05D022667 ORTHO05D009761 1.5e-15 88.2 377 33.4
DCAR_003953 Daucus carota HOM05D009013 ORTHO05D009761 1.9e-15 87.8 386 26.9
Sed0006555 Sechium edule HOM05D022667 ORTHO05D009761 5.6e-15 86.3 382 32.5
ClCG03G007220 Citrullus lanatus HOM05D025335 ORTHO05D025087 9.5e-15 85.5 391 29.4
RcHm_v2.0_Chr5g0012861 Rosa chinensis HOM05D014736 ORTHO05D009761 9.5e-15 85.5 411 38.9
MELO3C002700.2 Cucumis melo HOM05D025335 ORTHO05D025087 1.6e-14 84.7 385 28.8
MSTRG.13241 Avicennia marina HOM05D012266 ORTHO05D011876 2.8e-14 84.0 292 29.5
MSTRG.16199 Avicennia marina HOM05D012266 ORTHO05D011876 6.2e-14 82.8 386 29.0
Eucgr.D00345 Eucalyptus grandis HOM05D014736 ORTHO05D009761 8.0e-14 82.4 146 38.4
CsaV3_6G051330 Cucumis sativus L. HOM05D022667 ORTHO05D009761 1.0e-13 82.0 375 31.5
COL.COLO4_22804 Corchorus olitorius HOM05D009852 ORTHO05D009761 1.4e-13 81.6 342 30.7
TPR.G22001 Trifolium pratense HOM05D009013 ORTHO05D009761 1.4e-13 81.6 341 32.0
Oeu001056.1 Olea europaea HOM05D012266 ORTHO05D011876 2.3e-13 80.9 380 36.8
Actinidia19483 Actinidia chinensis HOM05D014645 ORTHO05D009761 6.8e-13 79.3 368 31.5
Rhsim02G0193600 Rhododendron simsii HOM05D014645 ORTHO05D009761 2.0e-12 77.8 419 26.3
ClCG01G024180 Citrullus lanatus HOM05D022667 ORTHO05D009761 4.4e-12 76.6 377 30.0
arahy.Tifrunner.gnm1.ann1.3YWF5K Arachis hypogaea HOM05D009013 ORTHO05D009761 1.7e-11 74.7 384 27.3
TAR624G0539 Trochodendron aralioides HOM05D041535 ORTHO05D009761 2.9e-11 73.9 271 32.1
PSO541G1916 Papaver somniferum HOM05D022831 ORTHO05D023597 6.4e-11 72.8 123 39.0
DCAR_027956 Daucus carota HOM05D014645 ORTHO05D009761 8.3e-11 72.4 404 30.9
Gohir.A06G135400 Gossypium hirsutum HOM05D009852 ORTHO05D009761 1.4e-10 71.6 331 30.8
Medtr6g068870 Medicago truncatula HOM05D009013 ORTHO05D009761 1.4e-10 71.6 200 31.0
Psat1g020440 Pisum sativum HOM05D009013 ORTHO05D009761 1.9e-10 71.2 208 36.1
SalBow7G2103 Salvia bowleyana HOM05D012266 ORTHO05D011876 1.9e-10 71.2 375 29.6
arahy.Tifrunner.gnm1.ann1.5V604V Arachis hypogaea HOM05D009013 ORTHO05D009761 2.4e-10 70.9 376 29.0
PSO675G7770 Papaver somniferum HOM05D022831 ORTHO05D023597 4.1e-10 70.1 123 38.2
Nitab4.5_0003714g0090 Nicotiana tabacum HOM05D012094 ORTHO05D011876 2.7e-09 67.4 368 28.5
EL10Ac8g19799 Beta vulgaris HOM05D018558 ORTHO05D018254 3.5e-09 67.0 379 28.2
Sed0023686 Sechium edule HOM05D022667 ORTHO05D009761 4.6e-09 66.6 375 28.8
MSTRG.7455 Avicennia marina HOM05D012266 ORTHO05D011876 6.0e-09 66.2 377 27.1
Medtr2g049330 Medicago truncatula HOM05D009013 ORTHO05D009761 7.8e-09 65.9 270 28.9
Cc00_g03210 Coffea canephora HOM05D012094 ORTHO05D009761 1.3e-08 65.1 366 26.0
FAN16G2400 Fragaria x ananassa HOM05D014736 ORTHO05D009761 2.3e-08 64.3 115 40.0
BcaB02g09560 Brassica carinata HOM05D008719 ORTHO05D010898 3.0e-08 63.9 93 46.2
Glyma.13G051300 Glycine max HOM05D009013 ORTHO05D009761 3.0e-08 63.9 46 60.9
BcaC02g11497 Brassica carinata HOM05D008719 ORTHO05D010898 6.6e-08 62.8 89 44.9
Gohir.D10G032500 Gossypium hirsutum HOM05D009852 ORTHO05D009761 6.6e-08 62.8 87 42.5
Gorai.011G034400 Gossypium raimondii HOM05D009852 ORTHO05D009761 6.6e-08 62.8 87 42.5
AT1G29530 Arabidopsis thaliana HOM05D008719 ORTHO05D010898 8.6e-08 62.4 56 55.4
Actinidia11203 Actinidia chinensis HOM05D021637 ORTHO05D023291 1.1e-07 62.0 104 37.5
Carub.0001s2776 Capsella rubella HOM05D008719 ORTHO05D010898 1.1e-07 62.0 83 45.8
CARHR028920 Cardamine hirsuta HOM05D008719 ORTHO05D010898 1.5e-07 61.6 91 46.2
Actinidia07666 Actinidia chinensis HOM05D014645 ORTHO05D009761 2.5e-07 60.8 283 29.0
Actinidia32517 Actinidia chinensis HOM05D021637 ORTHO05D023291 2.5e-07 60.8 209 25.4
Aa31LG6G6070 Aethionema arabicum HOM05D008719 ORTHO05D010898 2.5e-07 60.8 85 44.7
A08p25000 Brassica napus HOM05D008719 ORTHO05D010898 2.5e-07 60.8 122 33.6
BraA08t34455Z Brassica rapa HOM05D008719 ORTHO05D010898 2.5e-07 60.8 122 33.6
THA.LOC104812838 Tarenaya hassleriana HOM05D010784 ORTHO05D012957 2.5e-07 60.8 144 31.2
Ah.14g086770 Amaranthus hybridus HOM05D018558 ORTHO05D018254 9.5e-07 58.9 142 32.4
Gohir.A10G031700 Gossypium hirsutum HOM05D009852 ORTHO05D009761 1.6e-06 58.2 375 31.2
C04p14710 Brassica napus HOM05D008719 ORTHO05D010898 2.8e-06 57.4 89 43.8
Ca_25278_v3 Cicer arietinum L. HOM05D009013 ORTHO05D009761 3.6e-06 57.0 379 25.3
THA.LOC104820622 Tarenaya hassleriana HOM05D008719 ORTHO05D010898 3.6e-06 57.0 115 36.5
Actinidia39545 Actinidia chinensis HOM05D014645 ORTHO05D009761 4.7e-06 56.6 130 31.5
BcaB04g18454 Brassica carinata HOM05D010784 ORTHO05D012957 6.2e-06 56.2 61 45.9
AUR62035804 Chenopodium quinoa HOM05D018558 ORTHO05D018254 6.2e-06 56.2 381 26.8
Sp1g25470 Schrenkiella parvula HOM05D008719 ORTHO05D010898 6.2e-06 56.2 61 50.8
THA.LOC104806111 Tarenaya hassleriana HOM05D010784 ORTHO05D012957 6.2e-06 56.2 402 30.3


User provided reference genes

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