Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 5.9e-164 580.9 308 100.0
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 3.6e-161 571.6 308 98.4
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 5.2e-136 488.0 275 95.6
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 2.7e-132 475.7 322 82.0
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 5.0e-131 471.5 282 89.0
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 1.4e-128 463.4 322 81.7
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 1.9e-125 453.0 291 83.5
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 1.2e-121 440.3 319 78.4
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 6.2e-121 438.0 316 77.5
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.2e-118 429.5 295 80.7
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.9e-117 426.4 291 80.4
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 2.4e-117 426.0 308 74.4
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 2.4e-117 426.0 308 74.4
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 3.2e-117 425.6 313 76.7
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 1.0e-115 420.6 280 78.6
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 3.9e-115 418.7 266 81.2
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 5.1e-115 418.3 297 77.8
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 1.5e-114 416.8 325 69.5
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 1.9e-114 416.4 269 83.6
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 4.3e-114 415.2 295 79.3
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 7.3e-114 414.5 297 72.7
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 1.6e-113 413.3 266 80.5
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 2.1e-113 412.9 294 77.9
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 3.6e-113 412.1 266 80.1
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 4.7e-113 411.8 266 80.1
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 6.2e-113 411.4 282 75.9
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 1.4e-112 410.2 318 71.1
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 1.8e-112 409.8 266 78.6
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 2.4e-112 409.5 325 73.2
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 2.4e-112 409.5 325 71.7
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 2.4e-112 409.5 325 71.7
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 4.0e-112 408.7 327 68.8
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 4.0e-112 408.7 266 79.3
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 4.0e-112 408.7 266 78.9
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 6.9e-112 407.9 309 71.5
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 9.0e-112 407.5 264 79.9
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.5e-111 406.8 294 76.9
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 1.5e-111 406.8 325 69.2
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 2.0e-111 406.4 295 73.9
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 2.0e-111 406.4 298 76.5
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 3.4e-111 405.6 327 71.9
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 4.4e-111 405.2 325 71.4
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 1.3e-110 403.7 303 74.3
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 2.2e-110 402.9 268 77.6
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 6.4e-110 401.4 271 80.4
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 1.9e-109 399.8 295 74.6
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 2.4e-109 399.4 302 73.8
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 3.2e-109 399.1 318 69.5
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 3.2e-109 399.1 316 69.6
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 5.4e-109 398.3 301 75.1
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 9.3e-109 397.5 264 81.8
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 1.0e-107 394.0 271 76.0
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 1.0e-107 394.0 270 77.8
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 1.7e-107 393.3 265 77.4
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 3.0e-107 392.5 265 78.5
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 5.1e-107 391.7 266 77.1
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 1.5e-106 390.2 266 77.8
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 1.9e-106 389.8 266 76.3
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 5.6e-106 388.3 260 78.5
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 2.1e-105 386.3 266 75.9
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 2.1e-105 386.3 264 77.3
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 2.1e-105 386.3 279 76.0
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 4.8e-105 385.2 314 69.7
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 1.4e-104 383.6 260 75.8
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 1.4e-104 383.6 283 73.5
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 9.0e-104 380.9 275 71.3
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 2.6e-103 379.4 240 80.0
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.4e-101 373.6 265 74.3
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 3.2e-101 372.5 323 64.4
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 3.2e-101 372.5 266 73.7
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 1.0e-99 367.5 268 70.5
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 1.8e-99 366.7 266 72.6
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 3.0e-99 365.9 267 75.3
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 5.1e-99 365.2 312 64.1
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 5.1e-99 365.2 267 74.9
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 1.9e-98 363.2 234 82.9
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 4.3e-98 362.1 267 73.0
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 7.4e-98 361.3 274 71.5
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 9.6e-98 360.9 268 72.8
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 2.1e-97 359.8 268 73.1
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 2.8e-97 359.4 311 66.9
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 3.7e-97 359.0 269 69.5
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 3.7e-97 359.0 269 69.5
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 4.8e-97 358.6 289 66.1
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 4.8e-97 358.6 274 67.2
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 8.1e-97 357.8 317 63.1
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 2.0e-95 353.2 266 68.4
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 9.9e-95 350.9 273 67.0
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 4.2e-93 345.5 319 62.7
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 9.3e-93 344.4 328 61.3
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 2.7e-92 342.8 329 61.1
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.0e-91 340.9 235 79.1
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 9.6e-90 334.3 272 65.4
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 1.1e-88 330.9 266 69.2
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 1.4e-88 330.5 264 69.3
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 2.4e-88 329.7 311 60.5
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 6.9e-88 328.2 268 65.3
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 9.3e-85 317.8 318 57.9
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 7.9e-84 314.7 234 69.7
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 1.3e-83 313.9 274 67.9
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 3.1e-80 302.8 234 65.8
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 4.1e-80 302.4 212 73.1
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 5.3e-80 302.0 268 65.7
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 9.7e-74 281.2 248 62.9
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 1.1e-72 277.7 249 58.6
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 1.5e-71 273.9 237 64.6
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 5.5e-69 265.4 179 76.0
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 1.2e-68 264.2 183 75.4
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 3.3e-66 256.1 185 75.1
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 2.4e-64 250.0 270 54.1
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 3.0e-59 233.0 155 74.8
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 8.8e-59 231.5 284 53.9
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 4.8e-57 225.7 216 56.9
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 5.9e-47 192.2 221 55.2
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.8e-46 189.5 263 50.6
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 8.3e-41 171.8 128 68.0
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 3.5e-23 113.2 81 70.4
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 1.5e-21 107.8 116 51.7
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 4.9e-17 92.8 84 60.7
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 1.4e-16 91.3 115 49.6
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 1.6e-15 87.8 115 49.6
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 8.3e-09 65.5 66 53.0
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 3.2e-08 63.5 66 53.0


User provided reference genes

Program Settings