Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 5.0e-163 577.8 308 100.0
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 2.3e-160 568.9 308 98.4
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 1.1e-136 490.3 275 96.0
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 3.5e-132 475.3 322 82.0
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.9e-130 469.5 282 88.7
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 8.1e-129 464.2 322 81.7
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 9.2e-125 450.7 291 83.2
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 2.5e-122 442.6 319 78.7
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 2.1e-121 439.5 316 77.5
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 1.7e-118 429.9 309 75.4
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 1.7e-118 429.9 309 75.4
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 8.4e-118 427.6 291 80.8
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.1e-117 427.2 294 79.6
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 7.1e-117 424.5 313 76.7
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 1.0e-115 420.6 273 79.9
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 1.3e-115 420.2 325 70.2
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 2.3e-115 419.5 266 81.2
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 1.5e-114 416.8 297 77.1
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 1.9e-114 416.4 301 72.8
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 1.9e-114 416.4 269 83.6
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 9.6e-114 414.1 295 78.6
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 2.1e-113 412.9 324 72.2
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 2.8e-113 412.5 266 80.1
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 2.8e-113 412.5 327 69.4
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 3.6e-113 412.1 266 80.1
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 4.7e-113 411.8 294 77.2
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 6.2e-113 411.4 324 71.9
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 8.1e-113 411.0 325 73.2
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 8.1e-113 411.0 266 79.7
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 1.1e-112 410.6 266 78.6
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 1.1e-112 410.6 321 71.0
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 1.4e-112 410.2 324 71.9
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 1.4e-112 410.2 325 68.9
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 2.4e-112 409.5 266 78.9
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 3.1e-112 409.1 327 72.5
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 1.2e-111 407.1 312 71.8
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 1.5e-111 406.8 266 78.9
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 2.0e-111 406.4 264 79.5
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 2.0e-111 406.4 267 78.7
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.4e-111 405.6 294 76.2
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 4.4e-111 405.2 283 74.9
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 7.6e-111 404.4 298 76.2
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 2.9e-110 402.5 274 79.9
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 4.9e-110 401.7 271 80.4
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 4.9e-110 401.7 268 77.2
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 4.2e-109 398.7 322 72.4
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 4.2e-109 398.7 302 73.5
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 5.4e-109 398.3 316 69.6
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 9.3e-109 397.5 302 73.2
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 2.1e-108 396.4 271 76.4
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.7e-108 396.0 264 81.1
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 3.5e-108 395.6 318 69.2
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 3.5e-108 395.6 295 72.2
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 4.6e-108 395.2 270 78.1
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 5.1e-107 391.7 266 77.1
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 8.7e-107 391.0 266 77.8
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 8.7e-107 391.0 294 73.5
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 1.1e-106 390.6 266 77.1
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 1.1e-106 390.6 260 78.8
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 3.3e-106 389.0 314 70.4
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 4.3e-106 388.7 264 77.7
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 2.1e-105 386.3 266 75.9
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 4.8e-105 385.2 270 77.4
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 6.2e-105 384.8 274 75.9
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 3.1e-104 382.5 260 75.4
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 4.0e-104 382.1 283 69.6
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 4.5e-103 378.6 240 79.6
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 2.9e-102 375.9 323 64.7
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 8.4e-102 374.4 265 74.3
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 2.4e-101 372.9 266 73.7
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 4.6e-100 368.6 267 75.7
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 4.6e-100 368.6 268 70.5
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 7.9e-100 367.9 267 75.3
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 2.3e-99 366.3 266 72.6
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 3.0e-99 365.9 234 83.3
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 5.1e-99 365.2 311 65.9
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 6.7e-99 364.8 312 63.1
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 6.7e-99 364.8 267 73.4
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 1.9e-98 363.2 311 67.5
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 4.3e-98 362.1 268 73.5
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 1.6e-97 360.1 269 69.5
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 1.6e-97 360.1 269 69.5
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 1.6e-97 360.1 268 72.8
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 2.1e-97 359.8 295 63.4
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 6.2e-97 358.2 315 63.2
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 2.4e-96 356.3 289 66.1
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 9.0e-96 354.4 266 68.4
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 4.5e-95 352.1 273 67.0
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 4.2e-93 345.5 331 61.6
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 1.6e-92 343.6 319 62.4
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 2.1e-92 343.2 329 61.4
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.0e-91 339.3 235 78.7
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 4.3e-90 335.5 272 65.4
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 6.2e-89 331.6 311 61.1
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 2.4e-88 329.7 291 62.9
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 3.1e-88 329.3 266 68.4
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 5.3e-88 328.6 264 68.6
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 5.5e-85 318.5 318 58.2
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 3.5e-84 315.8 234 69.7
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 6.7e-83 311.6 274 67.2
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 1.8e-80 303.5 234 65.8
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 3.1e-80 302.8 268 65.3
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 4.1e-80 302.4 212 73.1
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 3.7e-73 279.3 315 54.3
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 3.1e-72 276.2 316 51.3
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 2.6e-71 273.1 237 63.7
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 2.5e-69 266.5 183 76.0
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 9.4e-69 264.6 179 75.4
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 7.4e-66 255.0 185 75.1
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 1.5e-63 247.3 270 53.7
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 2.3e-59 233.4 155 74.8
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 5.2e-59 232.3 284 52.8
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 9.7e-58 228.0 229 55.9
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 3.5e-47 193.0 221 55.2
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 6.5e-46 188.7 263 49.8
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 1.4e-40 171.0 128 67.2
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 4.6e-23 112.8 81 69.1
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 5.0e-22 109.4 159 44.0
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 4.9e-17 92.8 85 60.0
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 1.1e-16 91.7 115 49.6
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 1.2e-15 88.2 115 49.6
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 8.3e-09 65.5 66 53.0
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 3.2e-08 63.5 66 53.0


User provided reference genes

Program Settings