Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p059480 Quercus lobata HOM05D004468 ORTHO05D008180 3.2e-72 275.0 142 100.0
QL05p059278 Quercus lobata HOM05D004468 ORTHO05D008180 1.2e-50 203.4 127 87.4
CiPaw.09G126600 Carya illinoinensis HOM05D004468 ORTHO05D008180 2.8e-36 155.6 127 70.1
Haze_05549 Corylus avellana HOM05D004468 ORTHO05D008180 7.0e-35 151.0 128 68.0
Cfa000973 Carpinus fangiana HOM05D004468 ORTHO05D008180 1.0e-33 147.1 136 64.0
Prupe.4G077100 Prunus persica HOM05D004468 ORTHO05D008180 5.2e-30 134.8 137 58.4
Manes.15G119000 Manihot esculenta HOM05D004468 ORTHO05D008180 6.7e-30 134.4 127 59.8
Dinv05249 Davidia involucrata HOM05D004468 ORTHO05D008180 9.7e-29 130.6 127 57.5
CiPaw.10G093500 Carya illinoinensis HOM05D004468 ORTHO05D008180 4.1e-27 125.2 127 61.4
Dinv33636 Davidia involucrata HOM05D004468 ORTHO05D008180 5.3e-27 124.8 127 55.1
Potri.011G080000 Populus trichocarpa HOM05D004468 ORTHO05D008180 7.0e-27 124.4 127 57.5
Ciclev10016464m.g Citrus clementina HOM05D004468 ORTHO05D008180 1.2e-26 123.6 128 57.0
MD05G1288800 Malus domestica HOM05D004468 ORTHO05D008180 1.3e-25 120.2 138 53.6
MD10G1264900 Malus domestica HOM05D004468 ORTHO05D008180 1.7e-25 119.8 138 52.9
Thecc.06G154000 Theobroma cacao HOM05D004468 ORTHO05D008180 1.1e-24 117.1 127 52.8
Nitab4.5_0001040g0150 Nicotiana tabacum HOM05D004468 ORTHO05D008180 1.5e-24 116.7 127 54.3
Dinv30712 Davidia involucrata HOM05D004468 ORTHO05D008180 1.9e-24 116.3 127 52.8
Sopen02g019960 Solanum pennellii HOM05D004468 ORTHO05D008180 2.5e-24 115.9 127 54.3
Solyc02g070880.1 Solanum lycopersicum HOM05D004468 ORTHO05D008180 2.1e-23 112.8 127 55.1
PGSC0003DMG400008295 Solanum tuberosum HOM05D004468 ORTHO05D008180 1.4e-22 110.2 127 53.5
Nn4g26508 Nelumbo nucifera HOM05D004468 ORTHO05D008180 1.8e-22 109.8 128 53.9
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 1.2e-21 107.1 127 54.3
CAN.G257.6 Capsicum annuum HOM05D004468 ORTHO05D008180 1.5e-21 106.7 127 52.0
CsaV3_6G051560 Cucumis sativus L. HOM05D004468 ORTHO05D008180 7.5e-21 104.4 132 51.5
Gohir.A10G039100 Gossypium hirsutum HOM05D004468 ORTHO05D008180 7.5e-21 104.4 127 49.6
Sabra11G0068700 Salix brachista HOM05D004468 ORTHO05D008180 2.2e-20 102.8 127 49.6
Sabra11G0070800 Salix brachista HOM05D004468 ORTHO05D008180 2.2e-20 102.8 127 49.6
Sed0014650 Sechium edule HOM05D004468 ORTHO05D008180 6.3e-20 101.3 130 47.7
COL.COLO4_06070 Corchorus olitorius HOM05D004468 ORTHO05D008180 8.3e-20 100.9 127 48.0
Duzib160G0871 Durio zibethinus HOM05D004468 ORTHO05D008180 8.3e-20 100.9 127 51.2
Hma1.2p1_0164F.1_g073090 Hydrangea macrophylla HOM05D004468 ORTHO05D008180 8.3e-20 100.9 128 53.1
Gorai.011G042000 Gossypium raimondii HOM05D004468 ORTHO05D008180 1.8e-19 99.8 127 48.0
Glyma.05G129400 Glycine max HOM05D004468 ORTHO05D008180 9.1e-19 97.4 127 47.2
Sed0007839 Sechium edule HOM05D004468 ORTHO05D008180 1.2e-18 97.1 130 45.4
Manes.17G067600 Manihot esculenta HOM05D004468 ORTHO05D008180 2.0e-18 96.3 127 48.0
Gohir.A05G150000 Gossypium hirsutum HOM05D004468 ORTHO05D008180 7.7e-18 94.4 127 45.7
TPR.G4895 Trifolium pratense HOM05D004468 ORTHO05D008180 1.3e-17 93.6 132 48.5
Aqoxy1G01779 Aquilegia oxysepala HOM05D004468 ORTHO05D008180 5.0e-17 91.7 129 48.8
Duzib235G1094 Durio zibethinus HOM05D004468 ORTHO05D008180 5.0e-17 91.7 127 49.6
Gohir.D05G152600 Gossypium hirsutum HOM05D004468 ORTHO05D008180 8.6e-17 90.9 128 45.3
Gorai.009G156700 Gossypium raimondii HOM05D004468 ORTHO05D008180 8.6e-17 90.9 127 44.1
Ca_18271_v3 Cicer arietinum L. HOM05D004468 ORTHO05D008180 1.5e-16 90.1 130 47.7
Duzib192G0660 Durio zibethinus HOM05D004468 ORTHO05D008180 1.9e-16 89.7 127 48.0
Phvul.002G194400 Phaseolus vulgaris HOM05D004468 ORTHO05D008180 4.2e-16 88.6 130 42.3
Lalb_Chr13g0291991 Lupinus albus HOM05D004468 ORTHO05D008180 9.5e-16 87.4 124 48.4
TWI53G1884 Tripterygium wilfordii HOM05D004468 ORTHO05D008180 1.2e-15 87.0 107 50.5
Atru.chr10.1342 Acer truncatum HOM05D004468 ORTHO05D008180 2.1e-15 86.3 93 55.9
arahy.Tifrunner.gnm1.ann1.2E3FWC Arachis hypogaea HOM05D004468 ORTHO05D008180 2.8e-15 85.9 129 41.9
vmacro10945 Vaccinium macrocarpon HOM05D004468 ORTHO05D008180 2.8e-15 85.9 127 45.7
Medtr4g096660 Medicago truncatula HOM05D004468 ORTHO05D008180 1.0e-14 84.0 130 46.2
TAR629G0415 Trochodendron aralioides HOM05D004468 ORTHO05D008180 1.4e-14 83.6 109 52.3
Psat7g090880 Pisum sativum HOM05D004468 ORTHO05D008180 2.3e-14 82.8 132 42.4
SalBow6G4733 Salvia bowleyana HOM05D004468 ORTHO05D008180 3.0e-14 82.4 127 44.9
SalBow7G0317 Salvia bowleyana HOM05D004468 ORTHO05D008180 3.0e-14 82.4 127 44.9
MD05G1288000 Malus domestica HOM05D004468 ORTHO05D008180 4.0e-14 82.0 138 44.2
MSTRG.14764 Avicennia marina HOM05D004468 ORTHO05D008180 5.2e-14 81.6 127 42.5
Gohir.D10G039900 Gossypium hirsutum HOM05D004468 ORTHO05D008180 5.2e-14 81.6 127 44.1
Lj4g0016525 Lotus japonicus HOM05D004468 ORTHO05D008180 8.9e-14 80.9 128 45.3
Glyma.08G084100 Glycine max HOM05D004468 ORTHO05D008180 1.2e-13 80.5 129 42.6
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 1.2e-13 80.5 129 45.0
VMungo0251G1661 Vigna mungo HOM05D004468 ORTHO05D008180 1.2e-13 80.5 81 50.6
MD05G1288300 Malus domestica HOM05D004468 ORTHO05D008180 2.6e-13 79.3 138 43.5
RhsimUnG0149400 Rhododendron simsii HOM05D004468 ORTHO05D008180 2.2e-12 76.3 127 42.5
Cc09_g09510 Coffea canephora HOM05D004468 ORTHO05D008180 2.8e-12 75.9 127 45.7
Oeu040960.2 Olea europaea HOM05D004468 ORTHO05D008180 3.7e-12 75.5 140 40.7
Sc17g0005060 Simmondsia chinensis HOM05D004468 ORTHO05D008180 3.7e-12 75.5 127 43.3
Nitab4.5_0001655g0240 Nicotiana tabacum HOM05D004468 ORTHO05D008180 1.1e-11 73.9 83 53.0
PSO541G2725 Papaver somniferum HOM05D004468 ORTHO05D008180 4.1e-11 72.0 125 40.8
FvH4_3g06000 Fragaria vesca HOM05D004468 ORTHO05D008180 5.4e-11 71.6 140 41.4
FAN11G2204 Fragaria x ananassa HOM05D004468 ORTHO05D008180 5.4e-11 71.6 140 41.4
PSO675G1482 Papaver somniferum HOM05D004468 ORTHO05D008180 2.7e-10 69.3 125 40.0
FAN21G2255 Fragaria x ananassa HOM05D004468 ORTHO05D008180 7.8e-10 67.8 139 38.8
RcHm_v2.0_Chr5g0013411 Rosa chinensis HOM05D004468 ORTHO05D008180 1.3e-09 67.0 141 39.7
FAN25G3280 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.7e-09 66.6 140 40.0
Nn3g20652 Nelumbo nucifera HOM05D004468 ORTHO05D008180 2.9e-09 65.9 91 47.3
Oeu052384.1 Olea europaea HOM05D004468 ORTHO05D008180 2.9e-09 65.9 127 40.2
RhsimUnG0174800 Rhododendron simsii HOM05D004468 ORTHO05D008180 3.8e-09 65.5 77 53.2
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 8.6e-09 64.3 55 56.4
Lj1P1184T76 Lonicera japonica HOM05D004468 ORTHO05D008180 1.5e-08 63.5 58 63.8
MSTRG.13248 Avicennia marina HOM05D004468 ORTHO05D008180 2.1e-07 59.7 130 37.7
CDE02G0697 Ceratophyllum demersum HOM05D004468 ORTHO05D008180 2.8e-07 59.3 133 35.3
THA.LOC104820641 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 2.8e-07 59.3 132 34.8
FAN16G0098 Fragaria x ananassa HOM05D004468 ORTHO05D008180 6.1e-07 58.2 140 37.9
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 4.0e-06 55.5 59 59.3
Actinidia39559 Actinidia chinensis HOM05D004468 ORTHO05D008180 4.0e-06 55.5 59 52.5
Migut.H01376 Erythranthe guttata HOM05D004468 ORTHO05D008180 5.2e-06 55.1 130 40.0


User provided reference genes

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