Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p059246 Quercus lobata HOM05D003563 ORTHO05D005325 4.3e-33 144.1 71 100.0
QL02p008438 Quercus lobata HOM05D003563 ORTHO05D005325 5.8e-30 133.7 70 91.4
Lj1g0022254 Lotus japonicus HOM05D003563 ORTHO05D005325 3.2e-28 127.9 70 85.7
Psat1g077120 Pisum sativum HOM05D003563 ORTHO05D005325 1.6e-27 125.6 70 82.9
VMungo0464G1044 Vigna mungo HOM05D003563 ORTHO05D005325 1.6e-27 125.6 70 82.9
Haze_07269 Corylus avellana HOM05D003563 ORTHO05D005325 3.5e-27 124.4 70 81.4
Glyma.19G017200 Glycine max HOM05D003563 ORTHO05D005325 3.5e-27 124.4 70 82.9
Phvul.009G057500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 3.5e-27 124.4 70 81.4
Cfa018145 Carpinus fangiana HOM05D003563 ORTHO05D005325 4.6e-27 124.0 70 81.4
Phvul.004G023500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 4.6e-27 124.0 70 80.0
Eucgr.F01561 Eucalyptus grandis HOM05D003563 ORTHO05D005325 6.0e-27 123.6 70 81.4
ClCG08G015170 Citrullus lanatus HOM05D003563 ORTHO05D005325 1.0e-26 122.9 70 80.0
MELO3C010936.2 Cucumis melo HOM05D003563 ORTHO05D005325 1.0e-26 122.9 70 80.0
CiPaw.15G077500 Carya illinoinensis HOM05D003563 ORTHO05D005325 1.3e-26 122.5 69 81.2
CsaV3_2G028640 Cucumis sativus L. HOM05D003563 ORTHO05D005325 1.3e-26 122.5 71 78.9
VMungo1309G1719 Vigna mungo HOM05D003563 ORTHO05D005325 1.3e-26 122.5 70 80.0
Glyma.04G032600 Glycine max HOM05D003563 ORTHO05D005325 1.7e-26 122.1 70 77.1
AT5G42740 Arabidopsis thaliana HOM05D003563 ORTHO05D005325 2.3e-26 121.7 70 75.7
arahy.Tifrunner.gnm1.ann1.7JQX15 Arachis hypogaea HOM05D003563 ORTHO05D005325 2.3e-26 121.7 70 80.0
arahy.Tifrunner.gnm1.ann1.UW0ZL7 Arachis hypogaea HOM05D003563 ORTHO05D005325 2.3e-26 121.7 70 80.0
Carub.0008s0621 Capsella rubella HOM05D003563 ORTHO05D005325 2.3e-26 121.7 70 78.6
Duzib093G1625 Durio zibethinus HOM05D003563 ORTHO05D005325 2.3e-26 121.7 70 77.1
Medtr6g009330 Medicago truncatula HOM05D003563 ORTHO05D005325 2.3e-26 121.7 70 80.0
Oeu049958.2 Olea europaea HOM05D003563 ORTHO05D005325 2.3e-26 121.7 70 78.6
Peaxi162Scf00333g00512 Petunia axillaris HOM05D003563 ORTHO05D005325 2.3e-26 121.7 70 77.1
TAR381G1659 Trochodendron aralioides HOM05D003563 ORTHO05D005325 2.3e-26 121.7 70 78.6
BcaB07g31058 Brassica carinata HOM05D003563 ORTHO05D005325 3.0e-26 121.3 70 77.1
C09p25230 Brassica napus HOM05D003563 ORTHO05D005325 3.0e-26 121.3 70 77.1
BraA09t37600Z Brassica rapa HOM05D003563 ORTHO05D005325 3.0e-26 121.3 70 77.1
TPR.G32590 Trifolium pratense HOM05D003563 ORTHO05D005325 3.0e-26 121.3 70 80.0
Lalb_Chr23g0266621 Lupinus albus HOM05D003563 ORTHO05D005325 3.9e-26 120.9 70 81.4
TWI56G0595 Tripterygium wilfordii HOM05D003563 ORTHO05D005325 3.9e-26 120.9 70 78.6
MSTRG.1282 Avicennia marina HOM05D003563 ORTHO05D005325 5.0e-26 120.6 70 77.1
Gohir.A01G116000 Gossypium hirsutum HOM05D003563 ORTHO05D005325 5.0e-26 120.6 70 75.7
Lj4A41G56 Lonicera japonica HOM05D003563 ORTHO05D005325 5.0e-26 120.6 70 78.6
Sed0015721 Sechium edule HOM05D003563 ORTHO05D005325 5.0e-26 120.6 70 80.0
THA.LOC104798643 Tarenaya hassleriana HOM05D003563 ORTHO05D005325 5.0e-26 120.6 70 78.6
CSS0002435 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 6.6e-26 120.2 70 77.1
Ca_04241_v3 Cicer arietinum L. HOM05D003563 ORTHO05D005325 6.6e-26 120.2 70 80.0
Sp2g07360 Schrenkiella parvula HOM05D003563 ORTHO05D005325 6.6e-26 120.2 70 77.1
BcaC04g21978 Brassica carinata HOM05D003563 ORTHO05D005325 8.6e-26 119.8 70 75.7
BolC9t55419H Brassica oleracea HOM05D003563 ORTHO05D005325 8.6e-26 119.8 70 75.7
Cpa.g.sc36.68 Carica papaya HOM05D003563 ORTHO05D005325 8.6e-26 119.8 70 75.7
Nitab4.5_0000194g0210 Nicotiana tabacum HOM05D003563 ORTHO05D005325 8.6e-26 119.8 70 78.6
Nitab4.5_0009269g0010 Nicotiana tabacum HOM05D003563 ORTHO05D005325 8.6e-26 119.8 70 78.6
Aa31LG9G12790 Aethionema arabicum HOM05D003563 ORTHO05D005325 1.5e-25 119.0 70 74.3
A09p19900 Brassica napus HOM05D003563 ORTHO05D005325 1.5e-25 119.0 70 74.3
Ciclev10000722m.g Citrus clementina HOM05D003563 ORTHO05D005325 1.5e-25 119.0 70 80.0
Rhsim06G0034400 Rhododendron simsii HOM05D003563 ORTHO05D005325 1.5e-25 119.0 69 79.7
vmacro21635 Vaccinium macrocarpon HOM05D003563 ORTHO05D005325 1.5e-25 119.0 69 79.7
CARHR181650 Cardamine hirsuta HOM05D003563 ORTHO05D005325 1.9e-25 118.6 70 74.3
Cc10_g02960 Coffea canephora HOM05D003563 ORTHO05D005325 1.9e-25 118.6 70 77.1
Gohir.D01G104300 Gossypium hirsutum HOM05D003563 ORTHO05D005325 1.9e-25 118.6 70 74.3
Gorai.002G128400 Gossypium raimondii HOM05D003563 ORTHO05D005325 1.9e-25 118.6 70 74.3
Potri.008G118900 Populus trichocarpa HOM05D003563 ORTHO05D005325 1.9e-25 118.6 70 78.6
Sabra08G0090300 Salix brachista HOM05D003563 ORTHO05D005325 1.9e-25 118.6 70 78.6
Solyc12g014380.3 Solanum lycopersicum HOM05D003563 ORTHO05D005325 1.9e-25 118.6 70 80.0
Sopen12g006150 Solanum pennellii HOM05D003563 ORTHO05D005325 1.9e-25 118.6 70 80.0
MSTRG.25165 Avicennia marina HOM05D003563 ORTHO05D005325 2.5e-25 118.2 70 75.7
Nn1g05025 Nelumbo nucifera HOM05D003563 ORTHO05D005325 2.5e-25 118.2 70 75.7
Ah.02g117430 Amaranthus hybridus HOM05D003563 ORTHO05D005325 3.3e-25 117.9 70 75.7
Nn5g29576 Nelumbo nucifera HOM05D003563 ORTHO05D005325 3.3e-25 117.9 70 77.1
RcHm_v2.0_Chr6g0300881 Rosa chinensis HOM05D003563 ORTHO05D005325 3.3e-25 117.9 69 78.3
Aqoxy6G01090 Aquilegia oxysepala HOM05D003563 ORTHO05D005325 4.3e-25 117.5 70 78.6
CANSAT21G1125 Cannabis sativa HOM05D003563 ORTHO05D005325 4.3e-25 117.5 70 78.6
Prupe.1G380500 Prunus persica HOM05D003563 ORTHO05D005325 4.3e-25 117.5 69 76.8
Hund14325 Selenicereus undatus HOM05D003563 ORTHO05D005325 4.3e-25 117.5 70 74.3
Thhalv10003173m.g Eutrema salsugineum HOM05D003563 ORTHO05D005325 5.6e-25 117.1 70 75.7
Sed0018414 Sechium edule HOM05D003563 ORTHO05D005325 5.6e-25 117.1 70 75.7
Thecc.08G025500 Theobroma cacao HOM05D003563 ORTHO05D005325 5.6e-25 117.1 70 75.7
MD15G1031400 Malus domestica HOM05D003563 ORTHO05D005325 7.3e-25 116.7 69 75.4
Dinv36074 Davidia involucrata HOM05D003563 ORTHO05D005325 9.5e-25 116.3 70 77.1
FAN27G1814 Fragaria x ananassa HOM05D003563 ORTHO05D005325 9.5e-25 116.3 69 76.8
MBI16_g36556_MAGBIO Magnolia biondii HOM05D003563 ORTHO05D005325 9.5e-25 116.3 70 74.3
Sc02g0006230 Simmondsia chinensis HOM05D003563 ORTHO05D005325 9.5e-25 116.3 70 74.3
SGA_v2.0_scaffold54G19524 Striga asiatica HOM05D003563 ORTHO05D005325 9.5e-25 116.3 70 74.3
ECA232G1124 Erigeron canadensis HOM05D003563 ORTHO05D005325 1.2e-24 115.9 70 75.7
FvH4_2g39910 Fragaria vesca HOM05D003563 ORTHO05D005325 1.2e-24 115.9 69 76.8
FAN15G3737 Fragaria x ananassa HOM05D003563 ORTHO05D005325 1.2e-24 115.9 69 76.8
HPP92_002698 Vanilla planifolia HOM05D003563 ORTHO05D005325 1.6e-24 115.5 70 77.1
Manes.05G160800 Manihot esculenta HOM05D003563 ORTHO05D005325 2.1e-24 115.2 70 75.7
ATR0057G040 Amborella trichopoda HOM05D003563 ORTHO05D005325 2.8e-24 114.8 70 77.1
PSO675G8753 Papaver somniferum HOM05D003563 ORTHO05D005325 2.8e-24 114.8 70 72.9
CDE05G1619 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 4.7e-24 114.0 70 72.9
MD08G1034600 Malus domestica HOM05D003563 ORTHO05D005325 4.7e-24 114.0 69 73.9
DCAR_020972 Daucus carota HOM05D003563 ORTHO05D005325 6.2e-24 113.6 70 74.3
FAN20G1254 Fragaria x ananassa HOM05D003563 ORTHO05D005325 6.2e-24 113.6 69 75.4
Lsat_1_v5_gn_4_119160 Lactuca sativa HOM05D003563 ORTHO05D005325 6.2e-24 113.6 70 72.9
SMO119G0154 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 6.2e-24 113.6 70 72.9
CAN.G233.10 Capsicum annuum HOM05D003563 ORTHO05D005325 1.1e-23 112.8 70 74.3
PGR083G2760 Punica granatum HOM05D003563 ORTHO05D005325 1.1e-23 112.8 70 72.9
GSVIVG01009697001 Vitis vinifera HOM05D003563 ORTHO05D005325 1.1e-23 112.8 70 75.7
AUR62027308 Chenopodium quinoa HOM05D003563 ORTHO05D005325 1.4e-23 112.5 70 72.9
Migut.C00716 Erythranthe guttata HOM05D003563 ORTHO05D005325 1.4e-23 112.5 70 71.4
SalBow7G2312 Salvia bowleyana HOM05D003563 ORTHO05D005325 2.3e-23 111.7 69 72.5
AUR62007425 Chenopodium quinoa HOM05D003563 ORTHO05D005325 4.0e-23 110.9 70 71.4
SEGI_25229 Sequoiadendron giganteum HOM05D003563 ORTHO05D005325 4.0e-23 110.9 70 72.9
Zm00001eb059230 Zea mays HOM05D003563 ORTHO05D005325 4.0e-23 110.9 70 75.7
Manes.18G027800 Manihot esculenta HOM05D003563 ORTHO05D005325 5.2e-23 110.5 70 71.4
Os03g0776000 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 6.8e-23 110.2 70 74.3
Os06g0256500 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 6.8e-23 110.2 70 74.3
AagrBONN_evm.TU.Sc2ySwM_228.405 Anthoceros agrestis HOM05D003563 ORTHO05D005325 8.9e-23 109.8 70 71.4
unitig_37.g12990 Utricularia gibba HOM05D003563 ORTHO05D005325 8.9e-23 109.8 70 71.4
HanXRQChr09g0268611 Helianthus annuus HOM05D003563 ORTHO05D005325 1.2e-22 109.4 70 71.4
PSO541G4717 Papaver somniferum HOM05D003563 ORTHO05D005325 1.2e-22 109.4 70 71.4
Pp3c25_1860 Physcomitrium patens HOM05D003563 ORTHO05D005325 1.2e-22 109.4 70 70.0
Pp3c16_6380 Physcomitrium patens HOM05D003563 ORTHO05D005325 1.5e-22 109.0 70 71.4
SHI08159 Sapria himalayana HOM05D003563 ORTHO05D005325 3.4e-22 107.8 70 71.4
SMO340G0102 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 1.7e-21 105.5 69 68.1
Dinv39412 Davidia involucrata HOM05D003563 ORTHO05D005325 2.9e-21 104.8 70 71.4
Mapoly0034s0044 Marchantia polymorpha HOM05D003563 ORTHO05D005325 1.4e-20 102.4 70 64.3
CBR_g52178 Chara braunii HOM05D003563 ORTHO05D005325 2.4e-20 101.7 70 70.0
MCO02G104 Micromonas commoda HOM05D003563 ORTHO05D005325 2.4e-20 101.7 70 65.7
Cre03.g175400 Chlamydomonas reinhardtii HOM05D003563 ORTHO05D005325 3.2e-20 101.3 70 62.9
CBR_g3932 Chara braunii HOM05D003563 ORTHO05D005325 4.1e-20 100.9 70 67.1
Pp3c5_3820 Physcomitrium patens HOM05D003563 ORTHO05D005325 4.1e-20 100.9 70 64.3
AagrBONN_evm.TU.Sc2ySwM_344.3288 Anthoceros agrestis HOM05D003563 ORTHO05D005325 7.0e-20 100.1 70 64.3
Lj7C352G3 Lonicera japonica HOM05D003563 ORTHO05D005325 7.8e-19 96.7 56 76.8
AagrBONN_evm.TU.Sc2ySwM_368.1410 Anthoceros agrestis HOM05D003563 ORTHO05D005325 3.0e-18 94.7 70 60.0
EL10Ac5g11903 Beta vulgaris HOM05D003563 ORTHO05D005325 4.3e-17 90.9 56 71.4
COL.COLO4_26329 Corchorus olitorius HOM05D003563 ORTHO05D005325 5.6e-17 90.5 70 61.4
CARHR204890 Cardamine hirsuta HOM05D003563 ORTHO05D034044 6.2e-16 87.0 63 63.5
PRCOL_00005031 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 3.4e-14 81.3 65 58.5
PRCOL_00005550 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 2.9e-13 78.2 63 58.7
Gohir.D05G197950 Gossypium hirsutum HOM05D003563 ORTHO05D034044 1.4e-12 75.9 73 53.4
Gorai.009G203000 Gossypium raimondii HOM05D003563 ORTHO05D034044 1.4e-12 75.9 73 53.4
Duzib041G0434 Durio zibethinus HOM05D003563 ORTHO05D005325 9.2e-12 73.2 46 69.6
PSO541G3367 Papaver somniferum HOM05D003563 ORTHO05D005325 1.0e-10 69.7 52 61.5
Oeu024936.1 Olea europaea HOM05D003563 ORTHO05D005325 3.9e-10 67.8 44 68.2
Cfa022173 Carpinus fangiana HOM05D003563 ORTHO05D005325 4.0e-07 57.8 55 49.1
Haze_26983 Corylus avellana HOM05D003563 ORTHO05D005325 4.4e-06 54.3 55 47.3


User provided reference genes

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