Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 6.7e-185 650.6 341 100.0
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 1.8e-137 493.0 275 96.0
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 4.4e-136 488.4 275 95.6
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 3.5e-125 452.2 272 88.6
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 1.7e-124 449.9 310 79.7
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 6.8e-121 438.0 364 69.0
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 1.5e-120 436.8 272 87.1
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 3.2e-118 429.1 271 85.2
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 4.2e-118 428.7 266 84.6
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.5e-115 420.2 287 79.8
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 3.3e-115 419.1 264 85.2
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 1.3e-114 417.2 301 74.1
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 2.1e-114 416.4 301 73.8
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 1.1e-113 414.1 266 80.5
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 5.3e-113 411.8 271 78.6
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 1.5e-112 410.2 312 73.7
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 2.0e-112 409.8 269 82.5
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 3.4e-112 409.1 287 78.7
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 9.9e-112 407.5 267 77.2
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 1.3e-111 407.1 266 79.3
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 2.9e-111 406.0 266 78.9
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 4.9e-111 405.2 266 77.8
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 4.9e-111 405.2 274 76.3
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 4.9e-111 405.2 265 82.6
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 1.1e-110 404.1 266 78.2
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 1.9e-110 403.3 275 80.0
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 2.4e-110 402.9 266 78.6
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 3.2e-110 402.5 266 78.2
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 7.1e-110 401.4 287 77.0
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 9.3e-110 401.0 267 77.5
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 1.2e-109 400.6 271 77.1
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 1.6e-109 400.2 264 78.4
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 4.6e-109 398.7 314 71.3
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 6.0e-109 398.3 271 80.1
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 1.7e-108 396.7 272 76.1
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 3.9e-108 395.6 288 73.3
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 5.1e-108 395.2 271 75.6
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 5.1e-108 395.2 272 79.4
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 1.1e-107 394.0 271 76.0
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 1.1e-107 394.0 268 75.7
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 1.5e-107 393.7 266 79.7
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 4.3e-107 392.1 274 74.8
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 9.6e-107 391.0 271 75.3
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 9.6e-107 391.0 268 79.5
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 9.6e-107 391.0 272 78.3
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 1.6e-106 390.2 265 76.6
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.1e-106 389.8 264 79.9
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 2.8e-106 389.4 312 69.9
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 2.8e-106 389.4 266 79.3
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 6.2e-106 388.3 270 76.3
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 2.4e-105 386.3 317 70.0
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 4.0e-105 385.6 323 69.0
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 4.0e-105 385.6 323 69.0
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 6.9e-105 384.8 266 75.9
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 9.0e-105 384.4 317 70.7
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 1.2e-104 384.0 266 75.6
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 1.2e-104 384.0 260 77.7
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 1.2e-104 384.0 265 76.6
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 2.0e-104 383.3 264 76.9
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 2.6e-104 382.9 266 75.2
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 1.3e-103 380.6 266 75.2
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 4.9e-103 378.6 270 76.3
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 1.1e-102 377.5 272 71.3
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 1.4e-102 377.1 263 76.0
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 5.5e-102 375.2 252 76.2
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 3.5e-101 372.5 240 78.8
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 6.0e-101 371.7 267 74.2
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 1.0e-100 370.9 290 66.9
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.8e-100 370.2 265 74.0
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 5.1e-100 368.6 266 73.3
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 5.1e-100 368.6 267 75.7
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 8.7e-100 367.9 267 75.3
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 1.9e-99 366.7 304 67.4
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 1.9e-99 366.7 289 69.6
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 2.8e-98 362.8 304 68.4
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 6.2e-98 361.7 287 65.9
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 6.2e-98 361.7 287 65.9
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 6.2e-98 361.7 268 73.5
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 8.1e-98 361.3 234 82.5
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 1.1e-97 360.9 266 71.8
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 1.8e-97 360.1 266 69.5
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 2.4e-97 359.8 268 72.8
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 9.0e-97 357.8 277 66.4
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 2.6e-96 356.3 269 68.0
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 5.8e-96 355.1 284 64.8
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 1.7e-95 353.6 291 63.6
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 4.9e-95 352.1 269 67.7
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 6.5e-95 351.7 269 68.0
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 3.7e-90 335.9 297 63.0
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 1.4e-89 334.0 272 65.4
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 3.1e-89 332.8 269 67.7
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 5.3e-89 332.0 271 67.2
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.0e-88 330.1 224 79.0
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 5.9e-88 328.6 289 63.0
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 1.0e-87 327.8 266 68.4
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 2.9e-87 326.2 264 68.6
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 5.0e-87 325.5 268 64.6
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 1.1e-83 314.3 234 69.2
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 2.5e-83 313.2 311 58.2
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 3.1e-81 306.2 252 62.3
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 4.1e-81 305.8 267 67.8
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 7.7e-80 301.6 268 65.3
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 1.4e-78 297.4 212 72.6
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 3.4e-72 276.2 248 61.3
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 2.9e-71 273.1 249 57.4
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 5.5e-70 268.9 237 62.9
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 7.9e-69 265.0 179 76.5
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 3.0e-68 263.1 183 75.4
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 1.0e-63 248.1 178 75.3
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 1.5e-62 244.2 270 53.3
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 2.6e-59 233.4 155 76.1
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 6.3e-58 228.8 260 53.8
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 2.7e-56 223.4 216 56.5
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 4.7e-45 186.0 186 59.1
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 4.0e-44 183.0 263 49.0
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 3.5e-40 169.9 128 67.2
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 8.6e-23 112.1 81 69.1
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 3.1e-20 103.6 116 49.1
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 1.6e-16 91.3 85 58.8
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 2.7e-16 90.5 115 48.7
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 6.0e-16 89.4 115 49.6
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 9.2e-09 65.5 66 53.0
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 2.7e-08 63.9 75 48.0


User provided reference genes

Program Settings