Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 2.5e-148 528.9 291 100.0
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 1.4e-146 523.1 254 99.6
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 5.1e-141 504.6 254 95.7
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 4.3e-140 501.5 254 94.9
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 1.6e-139 499.6 254 94.1
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 8.1e-139 497.3 252 94.0
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.8e-138 496.1 250 95.2
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 4.0e-138 495.0 252 94.0
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 9.0e-138 493.8 253 92.5
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 1.5e-137 493.0 250 93.6
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 3.4e-137 491.9 255 93.3
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 4.5e-137 491.5 254 93.3
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 9.9e-137 490.3 253 92.5
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 9.9e-137 490.3 253 92.5
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 1.7e-136 489.6 252 92.1
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 4.9e-136 488.0 254 91.3
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 4.9e-136 488.0 255 92.9
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.9e-136 488.0 255 92.9
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.9e-136 488.0 255 92.9
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 4.9e-136 488.0 252 91.7
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 6.4e-136 487.6 265 89.8
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 1.1e-135 486.9 248 94.0
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 1.4e-135 486.5 253 93.7
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 1.4e-135 486.5 253 91.7
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 1.4e-135 486.5 252 92.5
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 1.9e-135 486.1 250 93.6
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 2.4e-135 485.7 250 93.6
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.4e-135 485.7 255 92.5
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 3.2e-135 485.3 253 90.9
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 5.4e-135 484.6 254 90.9
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 5.4e-135 484.6 253 90.5
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 7.1e-135 484.2 252 92.1
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.2e-134 483.4 248 92.7
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 1.2e-134 483.4 254 91.7
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.6e-134 483.0 248 92.7
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 2.1e-134 482.6 252 91.3
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 2.7e-134 482.3 248 92.7
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 2.7e-134 482.3 254 91.7
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 2.7e-134 482.3 253 90.9
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 3.5e-134 481.9 254 91.3
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 3.5e-134 481.9 251 93.6
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 3.5e-134 481.9 249 92.4
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 4.6e-134 481.5 247 93.1
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 7.9e-134 480.7 251 93.2
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 1.0e-133 480.3 253 91.7
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 1.3e-133 479.9 254 91.7
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 1.8e-133 479.6 247 93.1
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 1.8e-133 479.6 252 90.5
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 1.8e-133 479.6 252 90.5
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 2.3e-133 479.2 253 91.3
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 3.0e-133 478.8 253 91.3
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 3.0e-133 478.8 253 91.7
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 3.0e-133 478.8 245 94.3
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 3.9e-133 478.4 252 90.1
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 5.1e-133 478.0 249 91.2
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 6.7e-133 477.6 243 94.2
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 6.7e-133 477.6 252 90.9
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 8.7e-133 477.2 252 91.3
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 8.7e-133 477.2 254 90.2
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 8.7e-133 477.2 249 91.6
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 8.7e-133 477.2 254 90.2
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 8.7e-133 477.2 241 95.4
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 1.1e-132 476.9 248 93.1
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.1e-132 476.9 250 91.6
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 1.1e-132 476.9 248 92.3
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 1.5e-132 476.5 249 90.4
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 1.5e-132 476.5 271 86.0
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 1.9e-132 476.1 253 90.5
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 1.9e-132 476.1 253 91.7
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 2.5e-132 475.7 250 91.2
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 3.3e-132 475.3 249 91.2
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 3.3e-132 475.3 249 92.4
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 4.3e-132 474.9 250 91.6
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 5.6e-132 474.6 246 92.3
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 7.4e-132 474.2 254 89.8
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 7.4e-132 474.2 251 90.4
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 7.4e-132 474.2 249 90.4
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 2.1e-131 472.6 248 91.9
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 2.1e-131 472.6 248 91.9
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 2.8e-131 472.2 250 91.6
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 2.8e-131 472.2 246 91.9
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 6.2e-131 471.1 247 91.9
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 6.2e-131 471.1 248 90.3
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 5.3e-130 468.0 246 91.5
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 1.2e-129 466.8 247 91.1
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 3.4e-129 465.3 248 89.5
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 4.2e-127 458.4 249 87.6
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 2.7e-126 455.7 248 88.7
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 7.4e-124 447.6 248 87.9
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 1.3e-123 446.8 265 84.9
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 1.3e-123 446.8 251 84.9
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 3.7e-123 445.3 353 67.4
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 4.5e-121 438.3 247 86.2
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 4.2e-119 431.8 226 91.6
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 5.5e-119 431.4 246 85.0
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 7.1e-119 431.0 247 84.2
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 9.3e-119 430.6 228 92.5
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 1.6e-118 429.9 248 84.7
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 4.8e-115 418.3 242 84.3
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 1.6e-110 403.3 246 78.9
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 4.6e-110 401.7 223 89.2
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 2.2e-99 366.3 189 94.7
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 5.0e-96 355.1 190 91.6
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 2.1e-94 349.7 245 69.8
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 9.1e-90 334.3 170 94.1
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 2.0e-89 333.2 170 94.7
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 9.4e-87 324.3 180 88.9
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 6.1e-86 321.6 168 94.0
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 5.7e-84 315.1 165 91.5
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 1.2e-81 307.4 182 84.6
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 9.8e-76 287.7 185 75.7
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.8e-75 285.4 164 86.6
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.4e-74 282.0 164 84.1
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.6e-73 280.4 164 85.4
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 3.8e-72 275.8 145 93.8
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 9.5e-71 271.2 178 77.5
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 2.8e-70 269.6 146 91.1
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 1.8e-69 266.9 154 87.0
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 1.5e-68 263.8 154 86.4
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.5e-68 263.8 213 67.1
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 4.4e-68 262.3 142 88.7
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 7.5e-68 261.5 155 83.2
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 1.2e-62 244.2 157 78.3
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 1.8e-53 213.8 140 76.4
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 6.8e-53 211.8 190 55.8
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.4e-52 209.1 151 72.2
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 7.1e-42 175.3 166 58.4
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 6.6e-40 168.7 93 86.0
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 6.6e-32 142.1 76 92.1
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 4.8e-30 136.0 64 93.8
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 9.9e-28 128.3 196 45.4
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 5.4e-26 122.5 71 83.1
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 8.7e-24 115.2 93 62.4
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 1.1e-18 98.2 55 81.8
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 3.2e-18 96.7 55 80.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 8.7e-16 88.6 45 86.7
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 1.1e-15 88.2 50 80.0
C09p15390 Brassica napus HOM05D013073 ORTHO05D014961 9.6e-07 58.5 88 40.9


User provided reference genes

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