Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 8.6e-57 223.4 111 100.0
CiPaw.09G122900 Carya illinoinensis HOM05D004022 ORTHO05D004090 7.9e-26 120.6 116 60.3
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 1.5e-24 116.3 107 57.0
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 4.8e-23 111.3 114 55.3
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 5.3e-22 107.8 105 56.2
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 6.9e-22 107.5 105 55.2
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 9.0e-22 107.1 116 51.7
CiPaw.10G091400 Carya illinoinensis HOM05D004022 ORTHO05D004090 1.2e-21 106.7 118 60.2
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.5e-21 106.3 105 55.2
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 3.4e-21 105.1 105 61.9
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 7.6e-21 104.0 111 53.2
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 7.6e-21 104.0 117 50.4
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 7.6e-21 104.0 117 50.4
Duzib160G0057 Durio zibethinus HOM05D004022 ORTHO05D004090 1.7e-20 102.8 108 53.7
Gohir.A10G041400 Gossypium hirsutum HOM05D004022 ORTHO05D004090 6.5e-20 100.9 117 48.7
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.1e-19 100.1 107 51.4
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 1.2e-18 96.7 109 48.6
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 1.2e-18 96.7 109 50.5
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 4.6e-18 94.7 104 55.8
Dinv32245 Davidia involucrata HOM05D004022 ORTHO05D004090 3.9e-17 91.7 110 46.4
Ciclev10017188m.g Citrus clementina HOM05D004022 ORTHO05D004090 1.6e-15 86.3 118 48.3
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 6.3e-15 84.3 108 49.1
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 4.5e-13 78.2 102 46.1
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 5.0e-12 74.7 107 46.7
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.1e-11 73.6 105 47.6
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 3.2e-11 72.0 98 43.9
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 3.2e-11 72.0 109 46.8
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 9.4e-11 70.5 102 46.1
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 9.4e-11 70.5 109 45.9
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 1.2e-10 70.1 106 42.5
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 1.2e-10 70.1 109 45.9
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 1.6e-10 69.7 93 47.3
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 1.6e-10 69.7 104 43.3
Cpa.g.sc17.10 Carica papaya HOM05D004022 ORTHO05D004090 2.7e-10 68.9 111 42.3
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 7.9e-10 67.4 106 45.3
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 7.9e-10 67.4 101 44.6
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 1.0e-09 67.0 106 39.6
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 1.4e-09 66.6 122 39.3
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 1.8e-09 66.2 112 42.9
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 2.3e-09 65.9 110 43.6
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 2.3e-09 65.9 95 46.3
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 2.3e-09 65.9 100 40.0
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 2.3e-09 65.9 104 42.3
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 3.0e-09 65.5 103 40.8
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 3.0e-09 65.5 103 40.8
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 3.0e-09 65.5 107 43.0
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 3.0e-09 65.5 102 41.2
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 3.9e-09 65.1 112 42.0
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 3.9e-09 65.1 112 42.0
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 3.9e-09 65.1 112 42.0
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 3.9e-09 65.1 106 42.5
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 5.1e-09 64.7 117 37.6
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 6.7e-09 64.3 114 39.5
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 6.7e-09 64.3 112 42.0
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 6.7e-09 64.3 100 42.0
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 1.1e-08 63.5 115 42.6
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.1e-08 63.5 100 41.0
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 1.5e-08 63.2 100 38.0
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 1.5e-08 63.2 96 44.8
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.5e-08 63.2 102 41.2
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 1.9e-08 62.8 119 37.0
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 1.9e-08 62.8 113 39.8
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 1.9e-08 62.8 106 39.6
TPR.G26259 Trifolium pratense HOM05D012904 ORTHO05D004090 1.9e-08 62.8 101 36.6
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 3.3e-08 62.0 104 38.5
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.3e-08 62.0 104 39.4
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 3.3e-08 62.0 114 42.1
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 3.3e-08 62.0 100 38.0
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 4.3e-08 61.6 99 41.4
Glyma.08G096000 Glycine max HOM05D012904 ORTHO05D004090 4.3e-08 61.6 103 39.8
Lalb_Chr20g0117911 Lupinus albus HOM05D012904 ORTHO05D004090 4.3e-08 61.6 103 39.8
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 4.3e-08 61.6 114 40.4
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 5.7e-08 61.2 128 36.7
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 5.7e-08 61.2 110 39.1
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 5.7e-08 61.2 111 38.7
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 5.7e-08 61.2 111 41.4
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 5.7e-08 61.2 103 38.8
Psat1g188880 Pisum sativum HOM05D012904 ORTHO05D004090 5.7e-08 61.2 101 35.6
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 5.7e-08 61.2 115 36.5
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 5.7e-08 61.2 106 37.7
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 5.7e-08 61.2 106 37.7
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 7.4e-08 60.8 109 43.1
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 7.4e-08 60.8 101 41.6
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 7.4e-08 60.8 103 38.8
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 7.4e-08 60.8 116 37.9
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 1.3e-07 60.1 106 40.6
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 1.3e-07 60.1 111 41.4
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 1.3e-07 60.1 111 41.4
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.3e-07 60.1 103 38.8
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 1.7e-07 59.7 109 39.4
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 1.7e-07 59.7 106 42.5
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 1.7e-07 59.7 104 41.3
Lj4g0014771 Lotus japonicus HOM05D012904 ORTHO05D004090 2.2e-07 59.3 101 43.6
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 2.8e-07 58.9 118 34.7
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 2.8e-07 58.9 111 40.5
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 2.8e-07 58.9 111 40.5
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 2.8e-07 58.9 118 34.7
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 2.8e-07 58.9 111 40.5
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 2.8e-07 58.9 106 40.6
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 2.8e-07 58.9 110 39.1
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 3.7e-07 58.5 118 34.7
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 3.7e-07 58.5 94 39.4
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 6.3e-07 57.8 108 38.9
ClCG01G024660 Citrullus lanatus HOM05D024889 ORTHO05D004090 6.3e-07 57.8 102 39.2
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 6.3e-07 57.8 110 41.8
Medtr2g019320 Medicago truncatula HOM05D012904 ORTHO05D004090 6.3e-07 57.8 104 39.4
Nitab4.5_0000639g0190 Nicotiana tabacum HOM05D004022 ORTHO05D004090 6.3e-07 57.8 105 36.2
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 8.2e-07 57.4 118 35.6
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 8.2e-07 57.4 115 38.3
Peaxi162Scf00035g00165 Petunia axillaris HOM05D004022 ORTHO05D004090 8.2e-07 57.4 106 36.8
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 1.1e-06 57.0 119 34.5
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 1.1e-06 57.0 113 36.3
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.1e-06 57.0 96 41.7
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 1.1e-06 57.0 103 39.8
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 1.1e-06 57.0 103 39.8
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 1.4e-06 56.6 109 39.4
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 1.4e-06 56.6 101 38.6
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 1.4e-06 56.6 96 41.7
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 1.4e-06 56.6 98 39.8
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 1.8e-06 56.2 111 40.5
Lalb_Chr13g0293851 Lupinus albus HOM05D012904 ORTHO05D004090 1.8e-06 56.2 107 38.3
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 1.8e-06 56.2 107 38.3
Sc08g0000960 Simmondsia chinensis HOM05D004022 ORTHO05D004090 1.8e-06 56.2 69 46.4
Rhsim13G0113700 Rhododendron simsii HOM05D004022 ORTHO05D004090 2.4e-06 55.8 88 47.7
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 3.1e-06 55.5 108 38.0
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 3.1e-06 55.5 106 38.7
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 3.1e-06 55.5 103 39.8
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 3.1e-06 55.5 105 39.0
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 3.1e-06 55.5 96 40.6
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 5.3e-06 54.7 101 39.6
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 5.3e-06 54.7 107 39.3
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 6.9e-06 54.3 103 35.9
Glyma.05G140700 Glycine max HOM05D012904 ORTHO05D004090 9.1e-06 53.9 104 39.4
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 9.1e-06 53.9 100 39.0
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 9.1e-06 53.9 103 39.8


User provided reference genes

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