Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p057206 Quercus lobata HOM05D000826 ORTHO05D006448 4.8e-70 267.7 133 100.0
QL05p055819 Quercus lobata HOM05D000826 ORTHO05D006448 5.5e-58 227.6 120 96.7
MD10G1260100 Malus domestica HOM05D000826 ORTHO05D006448 1.9e-50 202.6 120 84.2
CiPaw.09G121700 Carya illinoinensis HOM05D000826 ORTHO05D006448 3.2e-50 201.8 120 82.5
RcHm_v2.0_Chr5g0014471 Rosa chinensis HOM05D000826 ORTHO05D006448 5.5e-50 201.1 120 82.5
CiPaw.10G090200 Carya illinoinensis HOM05D000826 ORTHO05D006448 1.2e-49 199.9 120 85.8
Cfa000923 Carpinus fangiana HOM05D000826 ORTHO05D006448 2.1e-49 199.1 120 84.2
Dinv32232 Davidia involucrata HOM05D000826 ORTHO05D006448 2.7e-49 198.7 120 79.2
MD05G1281300 Malus domestica HOM05D000826 ORTHO05D006448 4.7e-49 198.0 120 82.5
Prupe.4G083300 Prunus persica HOM05D000826 ORTHO05D006448 1.8e-48 196.1 120 81.7
FAN21G2333 Fragaria x ananassa HOM05D000826 ORTHO05D006448 8.8e-48 193.7 120 80.0
FvH4_3g05240 Fragaria vesca HOM05D000826 ORTHO05D006448 4.4e-47 191.4 120 79.2
FAN11G2713 Fragaria x ananassa HOM05D000826 ORTHO05D006448 4.4e-47 191.4 120 79.2
Dinv21557 Davidia involucrata HOM05D000826 ORTHO05D006448 1.7e-46 189.5 120 77.5
FAN16G3098 Fragaria x ananassa HOM05D000826 ORTHO05D006448 1.1e-45 186.8 116 79.3
Manes.15G123600 Manihot esculenta HOM05D000826 ORTHO05D006448 4.1e-45 184.9 120 75.8
Manes.17G072300 Manihot esculenta HOM05D000826 ORTHO05D006448 7.0e-45 184.1 120 77.5
PGSC0003DMG400029872 Solanum tuberosum HOM05D000826 ORTHO05D006448 3.5e-44 181.8 120 71.7
Atru.chr10.1167 Acer truncatum HOM05D000826 ORTHO05D006448 5.9e-44 181.0 120 75.0
Sopen08g010730 Solanum pennellii HOM05D000826 ORTHO05D006448 5.9e-44 181.0 120 71.7
CSS0034369 Camellia sinensis var. sinensis HOM05D000826 ORTHO05D006448 1.0e-43 180.3 120 70.8
Solyc08g048450.4 Solanum lycopersicum HOM05D000826 ORTHO05D006448 2.2e-43 179.1 120 70.8
TAR627G0038 Trochodendron aralioides HOM05D000826 ORTHO05D006448 3.8e-43 178.3 122 73.8
CSS0028491 Camellia sinensis var. sinensis HOM05D000826 ORTHO05D006448 5.0e-43 177.9 120 70.0
Eucgr.D00287 Eucalyptus grandis HOM05D000826 ORTHO05D006448 6.5e-43 177.6 120 76.7
Nitab4.5_0006038g0020 Nicotiana tabacum HOM05D000826 ORTHO05D006448 8.5e-43 177.2 120 70.8
vmacro03342 Vaccinium macrocarpon HOM05D000826 ORTHO05D006448 8.5e-43 177.2 120 72.5
GSVIVG01021525001 Vitis vinifera HOM05D000826 ORTHO05D006448 8.5e-43 177.2 120 75.0
CSS0017067 Camellia sinensis var. sinensis HOM05D000826 ORTHO05D006448 1.1e-42 176.8 120 69.2
Nitab4.5_0005094g0040 Nicotiana tabacum HOM05D000826 ORTHO05D006448 1.9e-42 176.0 120 70.0
Actinidia39586 Actinidia chinensis HOM05D000826 ORTHO05D006448 2.5e-42 175.6 122 73.0
ClCG03G006680 Citrullus lanatus HOM05D000826 ORTHO05D006448 3.2e-42 175.3 121 74.4
MELO3C002752.2 Cucumis melo HOM05D000826 ORTHO05D006448 4.2e-42 174.9 120 72.5
AUR62002697 Chenopodium quinoa HOM05D000826 ORTHO05D006448 5.5e-42 174.5 120 73.3
TWI09G1644 Tripterygium wilfordii HOM05D000826 ORTHO05D006448 5.5e-42 174.5 120 71.7
EL10Ac8g19645 Beta vulgaris HOM05D000826 ORTHO05D006448 9.4e-42 173.7 120 70.8
Hma1.2p1_0020F.1_g014180 Hydrangea macrophylla HOM05D000826 ORTHO05D006448 1.2e-41 173.3 120 70.0
Hma1.2p1_0020F.1_g014190 Hydrangea macrophylla HOM05D000826 ORTHO05D006448 1.2e-41 173.3 120 70.0
Thecc.06G147800 Theobroma cacao HOM05D000826 ORTHO05D006448 1.6e-41 172.9 132 68.9
Duzib160G0889 Durio zibethinus HOM05D000826 ORTHO05D006448 2.7e-41 172.2 132 68.9
Potri.011G082800 Populus trichocarpa HOM05D000826 ORTHO05D006448 2.7e-41 172.2 120 73.3
Sc05g0006070 Simmondsia chinensis HOM05D000826 ORTHO05D006448 3.6e-41 171.8 120 72.5
CSS0044711 Camellia sinensis var. sinensis HOM05D000826 ORTHO05D006448 4.7e-41 171.4 116 69.8
CsaV3_1G004640 Cucumis sativus L. HOM05D000826 ORTHO05D006448 4.7e-41 171.4 120 70.8
Sabra11G0065900 Salix brachista HOM05D000826 ORTHO05D006448 1.0e-40 170.2 118 72.9
Sc05g0006080 Simmondsia chinensis HOM05D000826 ORTHO05D006448 1.4e-40 169.9 120 69.2
MSTRG.7501 Avicennia marina HOM05D000826 ORTHO05D006448 1.8e-40 169.5 120 70.0
Cc00_g12600 Coffea canephora HOM05D000826 ORTHO05D006448 2.3e-40 169.1 120 70.8
Ah.09g232510 Amaranthus hybridus HOM05D000826 ORTHO05D006448 5.2e-40 167.9 120 69.2
Rhsim13G0115600 Rhododendron simsii HOM05D000826 ORTHO05D006448 5.2e-40 167.9 120 69.2
Sed0003877 Sechium edule HOM05D000826 ORTHO05D006448 5.2e-40 167.9 120 70.0
CANSAT35G1538 Cannabis sativa HOM05D000826 ORTHO05D006448 6.7e-40 167.5 123 72.4
Lj2A320T45 Lonicera japonica HOM05D000826 ORTHO05D006448 8.8e-40 167.2 121 67.8
Lalb_Chr18g0054071 Lupinus albus HOM05D000826 ORTHO05D006448 8.8e-40 167.2 120 68.3
SGA_v2.0_scaffold1G00195 Striga asiatica HOM05D000826 ORTHO05D006448 8.8e-40 167.2 121 70.2
Glyma.05G141900 Glycine max HOM05D000826 ORTHO05D006448 1.1e-39 166.8 120 67.5
MBI02_g03072_MAGBIO Magnolia biondii HOM05D000826 ORTHO05D006448 2.0e-39 166.0 120 68.3
Gohir.D06G143500 Gossypium hirsutum HOM05D000826 ORTHO05D006448 3.3e-39 165.2 132 65.2
Nn3g20410 Nelumbo nucifera HOM05D000826 ORTHO05D006448 3.3e-39 165.2 120 66.7
DCAR_007881 Daucus carota HOM05D000826 ORTHO05D006448 4.4e-39 164.9 120 70.0
COL.COLO4_31038 Corchorus olitorius HOM05D000826 ORTHO05D006448 5.7e-39 164.5 132 65.2
SalBow8G2423 Salvia bowleyana HOM05D000826 ORTHO05D006448 5.7e-39 164.5 124 70.2
Gohir.A06G138700 Gossypium hirsutum HOM05D000826 ORTHO05D006448 7.4e-39 164.1 132 64.4
Oeu040098.1 Olea europaea HOM05D000826 ORTHO05D006448 7.4e-39 164.1 120 67.5
Aqoxy1G01679 Aquilegia oxysepala HOM05D000826 ORTHO05D006448 9.7e-39 163.7 120 67.5
arahy.Tifrunner.gnm1.ann1.ATM76I Arachis hypogaea HOM05D000826 ORTHO05D006448 9.7e-39 163.7 123 68.3
PGR083G1867 Punica granatum HOM05D000826 ORTHO05D006448 9.7e-39 163.7 120 66.7
Gorai.010G167200 Gossypium raimondii HOM05D000826 ORTHO05D006448 1.3e-38 163.3 120 67.5
Hund21539 Selenicereus undatus HOM05D000826 ORTHO05D006448 1.7e-38 162.9 120 66.7
arahy.Tifrunner.gnm1.ann1.F3DNME Arachis hypogaea HOM05D000826 ORTHO05D006448 3.7e-38 161.8 123 67.5
arahy.Tifrunner.gnm1.ann1.Z6DGE6 Arachis hypogaea HOM05D000826 ORTHO05D006448 3.7e-38 161.8 123 67.5
Migut.M00893 Erythranthe guttata HOM05D000826 ORTHO05D006448 6.3e-38 161.0 121 67.8
Glyma.08G097800 Glycine max HOM05D000826 ORTHO05D006448 1.1e-37 160.2 120 65.0
Ciclev10015647m.g Citrus clementina HOM05D000826 ORTHO05D006448 1.4e-37 159.8 119 68.9
Cpa.g.sc17.2 Carica papaya HOM05D000826 ORTHO05D006448 1.8e-37 159.5 120 65.8
THA.LOC104798396 Tarenaya hassleriana HOM05D000826 ORTHO05D006448 4.1e-37 158.3 133 64.7
CAN.G42.14 Capsicum annuum HOM05D000826 ORTHO05D006448 5.3e-37 157.9 120 65.0
CDE12G0391 Ceratophyllum demersum HOM05D000826 ORTHO05D006448 9.1e-37 157.1 120 64.2
HanXRQChr03g0090071 Helianthus annuus HOM05D000826 ORTHO05D006448 2.0e-36 156.0 120 61.7
BcaB07g30849 Brassica carinata HOM05D000826 ORTHO05D006448 4.5e-36 154.8 132 63.6
Sed0026801 Sechium edule HOM05D000826 ORTHO05D006448 5.9e-36 154.5 122 63.1
PSO675G8347 Papaver somniferum HOM05D000826 ORTHO05D006448 7.7e-36 154.1 120 65.0
CARHR175610 Cardamine hirsuta HOM05D000826 ORTHO05D006448 2.2e-35 152.5 120 65.8
Os03g0643300 Oryza sativa ssp. japonica HOM05D000826 ORTHO05D006448 2.9e-35 152.1 130 61.5
VMungo0251G0373 Vigna mungo HOM05D000826 ORTHO05D006448 3.8e-35 151.8 120 61.7
BolC7t43479H Brassica oleracea HOM05D000826 ORTHO05D006448 6.5e-35 151.0 120 65.0
ECA234G1332 Erigeron canadensis HOM05D000826 ORTHO05D006448 6.5e-35 151.0 120 61.7
Carub.0008s0174 Capsella rubella HOM05D000826 ORTHO05D006448 1.1e-34 150.2 120 64.2
Thhalv10000861m.g Eutrema salsugineum HOM05D000826 ORTHO05D006448 1.1e-34 150.2 120 65.0
BraA06t27476Z Brassica rapa HOM05D000826 ORTHO05D006448 1.9e-34 149.4 120 64.2
CSS0030893 Camellia sinensis var. sinensis HOM05D000826 ORTHO05D006448 1.9e-34 149.4 101 71.3
Aa31LG9G6730 Aethionema arabicum HOM05D000826 ORTHO05D006448 2.5e-34 149.1 120 63.3
AL8G12290 Arabidopsis lyrata HOM05D000826 ORTHO05D006448 2.5e-34 149.1 120 63.3
A06p46110 Brassica napus HOM05D000826 ORTHO05D006448 2.5e-34 149.1 120 64.2
Phvul.002G180400 Phaseolus vulgaris HOM05D000826 ORTHO05D006448 2.5e-34 149.1 120 61.7
Sp2g11040 Schrenkiella parvula HOM05D000826 ORTHO05D006448 2.5e-34 149.1 120 63.3
Zm00001eb050460 Zea mays HOM05D000826 ORTHO05D006448 2.5e-34 149.1 124 63.7
C07p29380 Brassica napus HOM05D000826 ORTHO05D006448 3.2e-34 148.7 120 64.2
Lsat_1_v5_gn_4_29681 Lactuca sativa HOM05D000826 ORTHO05D006448 5.5e-34 147.9 120 60.8
BcaC06g31494 Brassica carinata HOM05D000826 ORTHO05D006448 7.2e-34 147.5 104 72.1
ATR1098G046 Amborella trichopoda HOM05D000826 ORTHO05D006448 1.2e-33 146.7 120 60.0
AT5G46180 Arabidopsis thaliana HOM05D000826 ORTHO05D006448 1.2e-33 146.7 120 62.5
Lj4g0015055 Lotus japonicus HOM05D000826 ORTHO05D006448 6.1e-33 144.4 121 60.3
Lj4g0011938 Lotus japonicus HOM05D000826 ORTHO05D006448 1.0e-32 143.7 121 60.3
CDE01G0123 Ceratophyllum demersum HOM05D000826 ORTHO05D006448 2.6e-31 139.0 103 66.0
SEGI_29053 Sequoiadendron giganteum HOM05D000826 ORTHO05D006448 2.8e-30 135.6 120 55.8
HPP92_014005 Vanilla planifolia HOM05D000029 ORTHO05D006448 6.3e-30 134.4 120 55.0
TPR.G13303 Trifolium pratense HOM05D000826 ORTHO05D006448 1.1e-29 133.7 121 57.0
Ca_18168_v3 Cicer arietinum L. HOM05D000826 ORTHO05D006448 5.3e-29 131.3 121 55.4
Haze_05627 Corylus avellana HOM05D000826 ORTHO05D006448 5.9e-28 127.9 78 83.3
BcaC04g21719 Brassica carinata HOM05D000826 ORTHO05D006448 1.7e-27 126.3 124 57.3
SMO119G0079 Selaginella moellendorffii HOM05D000826 ORTHO05D006448 2.2e-27 125.9 120 53.3
AagrBONN_evm.TU.Sc2ySwM_117.2020 Anthoceros agrestis HOM05D000826 ORTHO05D006448 9.4e-26 120.6 129 49.6
C09p28310 Brassica napus HOM05D003959 ORTHO05D001488 1.2e-25 120.2 106 63.2
Pp3c14_3770 Physcomitrium patens HOM05D000826 ORTHO05D006448 2.7e-25 119.0 120 50.8
CBR_g34489 Chara braunii HOM05D000826 ORTHO05D006448 1.0e-24 117.1 99 59.6
Mapoly0003s0017 Marchantia polymorpha HOM05D000826 ORTHO05D006448 8.8e-24 114.0 120 47.5
Glyma.17G184700 Glycine max HOM05D007034 ORTHO05D006448 2.2e-22 109.4 92 62.0
Glyma.19G189900 Glycine max HOM05D000826 ORTHO05D006448 5.9e-20 101.3 72 68.1
FAN16G2689 Fragaria x ananassa HOM05D000826 ORTHO05D006448 1.1e-18 97.1 58 77.6
CiPaw.01G112600 Carya illinoinensis HOM05D000826 ORTHO05D006448 6.8e-16 87.8 60 73.3
BolC9t55707H Brassica oleracea HOM05D000826 ORTHO05D006448 6.3e-14 81.3 58 65.5
RcHm_v2.0_Chr2g0108711 Rosa chinensis HOM05D000826 ORTHO05D006448 4.5e-12 75.1 43 79.1
Peaxi162Scf00317g00023 Petunia axillaris HOM05D000826 ORTHO05D006448 1.0e-08 63.9 45 71.1
A09p22160 Brassica napus HOM05D000826 ORTHO05D006448 2.0e-07 59.7 48 60.4
BraA09t37821Z Brassica rapa HOM05D000826 ORTHO05D006448 2.0e-07 59.7 48 60.4
PRCOL_00002709 Prasinoderma coloniale HOM05D000826 ORTHO05D006448 2.6e-07 59.3 118 36.4
Cre11.g474800 Chlamydomonas reinhardtii HOM05D000826 ORTHO05D006448 6.4e-06 54.7 97 34.0


User provided reference genes

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