Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 1.3e-169 599.7 317 100.0
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 3.3e-154 548.5 382 80.6
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 4.3e-133 478.4 382 70.9
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 4.1e-128 461.8 382 69.9
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 1.5e-125 453.4 384 66.9
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 1.9e-125 453.0 383 67.1
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 2.5e-125 452.6 382 66.8
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 5.6e-125 451.4 382 67.3
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 2.1e-124 449.5 384 67.2
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 2.1e-124 449.5 386 66.3
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 3.6e-124 448.7 382 65.7
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 4.7e-124 448.4 384 66.9
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 1.4e-123 446.8 383 66.8
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 1.8e-123 446.4 382 66.8
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 2.3e-123 446.0 382 66.5
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 2.3e-123 446.0 382 66.5
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 4.0e-123 445.3 382 65.4
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 5.2e-123 444.9 382 66.8
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 6.8e-123 444.5 385 67.5
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 8.9e-123 444.1 382 66.0
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 1.2e-122 443.7 382 65.7
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 2.0e-122 443.0 382 65.7
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 2.0e-122 443.0 382 65.7
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 5.8e-122 441.4 382 65.7
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 5.8e-122 441.4 382 65.4
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 1.3e-121 440.3 382 65.2
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 4.9e-121 438.3 382 65.2
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 1.4e-120 436.8 382 64.7
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 2.4e-120 436.0 382 63.9
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 3.2e-120 435.6 378 65.6
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 5.4e-120 434.9 382 65.2
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 2.0e-119 433.0 382 64.9
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 2.0e-119 433.0 382 64.9
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 2.7e-119 432.6 384 63.3
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 7.8e-119 431.0 365 67.4
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 2.3e-118 429.5 365 66.8
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 5.0e-118 428.3 382 63.6
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 8.6e-118 427.6 382 63.9
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 1.1e-117 427.2 382 64.9
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 2.5e-117 426.0 382 63.4
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 5.6e-117 424.9 383 64.0
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 2.1e-116 422.9 365 66.0
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.8e-115 419.9 382 61.8
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 2.3e-115 419.5 382 63.4
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 3.1e-115 419.1 382 62.8
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.2e-114 417.2 374 63.9
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 9.8e-114 414.1 382 63.6
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 2.2e-113 412.9 382 62.8
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 2.9e-113 412.5 383 61.1
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 8.3e-113 411.0 382 62.3
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 1.4e-112 410.2 382 61.5
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 5.4e-112 408.3 386 63.0
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 7.1e-112 407.9 382 61.8
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 3.5e-111 405.6 383 60.1
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 4.6e-111 405.2 384 61.7
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 1.0e-110 404.1 382 60.5
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 1.0e-110 404.1 382 60.5
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 1.3e-110 403.7 384 61.7
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 1.3e-110 403.7 384 61.7
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 1.3e-110 403.7 382 59.9
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 1.7e-110 403.3 384 61.2
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 8.6e-110 401.0 382 60.5
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.9e-109 399.8 385 61.6
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 2.5e-109 399.4 383 60.1
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 3.3e-109 399.1 384 61.2
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 3.3e-109 399.1 384 61.2
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 5.6e-109 398.3 385 61.0
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 5.6e-109 398.3 385 61.0
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 5.6e-109 398.3 384 60.9
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 9.5e-109 397.5 385 60.8
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 1.2e-108 397.1 383 59.5
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 1.6e-108 396.7 384 60.7
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 2.1e-108 396.4 385 60.8
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 2.1e-108 396.4 382 60.7
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 6.2e-108 394.8 385 61.0
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 2.3e-107 392.9 383 61.1
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 2.3e-107 392.9 389 59.9
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 3.1e-107 392.5 382 60.5
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 6.8e-107 391.3 382 59.4
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 2.6e-106 389.4 382 59.7
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 1.3e-105 387.1 386 58.3
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 2.9e-105 386.0 382 57.9
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 1.9e-104 383.3 382 58.1
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 3.2e-104 382.5 382 58.1
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 3.2e-104 382.5 384 59.1
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 3.2e-104 382.5 384 59.1
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 5.4e-104 381.7 378 57.1
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.7e-103 379.4 382 57.9
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 1.3e-102 377.1 384 58.9
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 2.5e-101 372.9 384 58.6
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 3.3e-101 372.5 383 58.0
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 1.2e-100 370.5 382 56.3
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 1.6e-100 370.2 384 57.3
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 2.8e-100 369.4 243 83.5
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 2.8e-100 369.4 382 57.3
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 4.7e-100 368.6 382 56.0
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 2.0e-98 363.2 383 55.6
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 6.4e-97 358.2 383 57.7
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 4.2e-96 355.5 331 62.8
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 4.6e-95 352.1 382 55.5
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 4.6e-95 352.1 369 54.5
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 1.3e-94 350.5 382 55.2
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 4.3e-93 345.5 382 54.7
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 1.8e-91 340.1 382 52.6
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 4.2e-88 328.9 388 53.1
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 6.0e-87 325.1 303 64.0
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 4.5e-82 308.9 281 63.3
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 1.3e-81 307.4 382 49.5
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 4.9e-81 305.4 395 51.1
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 2.7e-79 299.7 390 47.4
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 3.1e-75 286.2 385 44.7
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 4.0e-75 285.8 381 45.9
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 2.6e-74 283.1 383 43.1
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 3.4e-74 282.7 383 42.8
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 4.2e-72 275.8 382 44.5
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 1.0e-70 271.2 250 61.6
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 5.0e-65 252.3 383 43.3
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 6.1e-63 245.4 384 42.4
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 1.3e-60 237.7 389 38.6
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 2.4e-59 233.4 256 53.5
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.6e-55 220.7 249 53.8
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 7.9e-55 218.4 167 70.1
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 1.5e-53 214.2 163 71.2
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 1.3e-52 211.1 188 64.4
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 6.3e-52 208.8 205 62.0
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 6.3e-44 182.2 393 33.8
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 6.3e-44 182.2 159 64.8
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 7.0e-43 178.7 279 42.7
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.4e-38 164.5 98 80.6
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 4.1e-35 152.9 166 49.4
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 4.5e-34 149.4 119 65.5
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 7.7e-34 148.7 105 70.5
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.8e-33 146.4 225 43.1
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 1.9e-32 144.1 405 27.4
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 3.6e-31 139.8 153 53.6
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 4.4e-29 132.9 373 28.2
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 5.7e-29 132.5 161 48.4
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 5.9e-26 122.5 203 42.9
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 2.0e-21 107.5 188 42.0
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 2.8e-20 103.6 141 46.8
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 6.3e-20 102.4 411 26.5
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 1.4e-19 101.3 141 46.1
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.4e-19 100.5 104 59.6
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 1.2e-18 98.2 146 45.2
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 6.8e-14 82.4 120 43.3
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 4.4e-13 79.7 145 40.0
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 3.2e-11 73.6 63 61.9
Actinidia23183 Actinidia chinensis HOM05D003801 ORTHO05D057972 6.8e-06 55.8 64 48.4


User provided reference genes

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