Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 2.2e-61 238.8 121 100.0
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 3.5e-27 125.2 94 68.1
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 4.6e-27 124.8 94 68.1
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 7.3e-25 117.5 90 65.6
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 1.2e-24 116.7 89 62.9
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 1.0e-23 113.6 87 65.5
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 2.3e-23 112.5 96 61.5
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 4.0e-23 111.7 96 61.5
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 6.8e-23 110.9 117 53.8
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.5e-22 109.8 98 60.2
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 5.8e-22 107.8 93 55.9
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 7.5e-22 107.5 99 58.6
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 9.8e-22 107.1 90 64.4
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 9.8e-22 107.1 95 58.9
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 1.7e-21 106.3 76 63.2
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 2.2e-21 105.9 96 60.4
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 2.2e-21 105.9 97 54.6
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 2.9e-21 105.5 96 57.3
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 3.7e-21 105.1 79 63.3
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.1e-20 103.6 93 60.2
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.9e-20 102.8 96 55.2
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 3.2e-20 102.1 91 59.3
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 3.2e-20 102.1 81 66.7
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 5.4e-20 101.3 93 55.9
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 5.4e-20 101.3 85 58.8
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 5.4e-20 101.3 102 55.9
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 7.0e-20 100.9 89 59.6
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 7.0e-20 100.9 81 60.5
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 7.0e-20 100.9 89 57.3
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 7.0e-20 100.9 88 61.4
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 7.0e-20 100.9 88 64.8
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 9.2e-20 100.5 94 54.3
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.6e-19 99.8 90 60.0
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.6e-19 99.8 95 53.7
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 2.0e-19 99.4 78 61.5
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 3.5e-19 98.6 82 59.8
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 7.8e-19 97.4 92 59.8
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 7.8e-19 97.4 82 57.3
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 7.8e-19 97.4 96 54.2
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 7.8e-19 97.4 99 53.5
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.0e-18 97.1 90 55.6
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 1.0e-18 97.1 84 57.1
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 1.3e-18 96.7 90 51.1
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.3e-18 96.7 90 51.1
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 1.7e-18 96.3 82 58.5
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 2.3e-18 95.9 82 59.8
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 2.3e-18 95.9 84 52.4
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 3.9e-18 95.1 98 56.1
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 3.9e-18 95.1 98 51.0
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 6.6e-18 94.4 96 54.2
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 6.6e-18 94.4 86 59.3
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 6.6e-18 94.4 85 54.1
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 8.6e-18 94.0 73 58.9
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.5e-17 93.2 111 45.0
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 1.5e-17 93.2 74 60.8
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 1.5e-17 93.2 74 60.8
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 1.9e-17 92.8 70 61.4
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 1.9e-17 92.8 87 59.8
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.5e-17 92.4 76 55.3
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.5e-17 92.4 93 55.9
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 3.3e-17 92.0 90 48.9
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.3e-17 92.0 93 55.9
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 4.3e-17 91.7 76 56.6
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 4.3e-17 91.7 90 55.6
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 4.3e-17 91.7 90 55.6
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 4.3e-17 91.7 88 52.3
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 7.3e-17 90.9 105 49.5
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 9.5e-17 90.5 77 58.4
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 9.5e-17 90.5 92 53.3
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 3.6e-16 88.6 70 58.6
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 4.7e-16 88.2 94 48.9
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 4.7e-16 88.2 109 48.6
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 6.2e-16 87.8 68 61.8
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 6.2e-16 87.8 68 61.8
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 8.1e-16 87.4 78 52.6
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 8.1e-16 87.4 81 56.8
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 8.1e-16 87.4 81 56.8
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 8.1e-16 87.4 77 57.1
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.4e-15 86.7 80 53.8
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.4e-15 86.7 83 55.4
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 1.8e-15 86.3 82 51.2
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 1.8e-15 86.3 81 56.8
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 2.3e-15 85.9 75 62.7
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 3.1e-15 85.5 88 54.5
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 3.1e-15 85.5 78 55.1
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 4.0e-15 85.1 86 51.2
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 4.0e-15 85.1 103 47.6
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 5.2e-15 84.7 88 52.3
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 5.2e-15 84.7 87 51.7
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 5.2e-15 84.7 85 50.6
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 6.8e-15 84.3 83 53.0
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 8.9e-15 84.0 83 49.4
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 8.9e-15 84.0 81 55.6
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 8.9e-15 84.0 68 55.9
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 8.9e-15 84.0 97 52.6
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 8.9e-15 84.0 82 57.3
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.2e-14 83.6 87 51.7
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.5e-14 83.2 101 50.5
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 2.0e-14 82.8 73 63.0
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 2.6e-14 82.4 96 47.9
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 2.6e-14 82.4 79 54.4
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.6e-14 82.4 95 50.5
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 4.4e-14 81.6 89 49.4
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 5.8e-14 81.3 83 55.4
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 5.8e-14 81.3 77 54.5
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 7.5e-14 80.9 105 48.6
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 1.3e-13 80.1 79 44.3
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 1.3e-13 80.1 105 48.6
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 2.2e-13 79.3 82 54.9
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 2.9e-13 79.0 70 54.3
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 3.7e-13 78.6 55 63.6
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 3.7e-13 78.6 66 57.6
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 4.9e-13 78.2 69 52.2
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 6.4e-13 77.8 89 46.1
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 6.4e-13 77.8 89 46.1
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 8.3e-13 77.4 88 47.7
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.1e-12 77.0 73 60.3
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 1.4e-12 76.6 63 61.9
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 1.9e-12 76.3 61 62.3
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.4e-12 75.9 73 60.3
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 3.2e-12 75.5 95 44.2
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 3.2e-12 75.5 95 44.2
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 3.2e-12 75.5 89 44.9
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 3.2e-12 75.5 95 41.1
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 4.1e-12 75.1 64 54.7
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 4.1e-12 75.1 113 45.1
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 5.4e-12 74.7 80 48.8
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 5.4e-12 74.7 62 54.8
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 5.4e-12 74.7 81 46.9
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.4e-12 74.7 89 44.9
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 1.6e-11 73.2 79 44.3
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.7e-11 72.4 82 45.1
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 2.7e-11 72.4 86 44.2
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 3.5e-11 72.0 70 54.3
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 4.6e-11 71.6 73 52.1
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 4.6e-11 71.6 60 60.0
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 6.0e-11 71.2 75 48.0
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.0e-10 70.5 93 48.4
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.0e-10 68.9 90 48.9
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 3.0e-10 68.9 89 43.8
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 2.5e-09 65.9 47 68.1
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 3.3e-09 65.5 55 63.6
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 7.3e-09 64.3 49 69.4
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 4.7e-08 61.6 59 54.2
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 4.7e-08 61.6 88 37.5
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 2.3e-07 59.3 74 47.3
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.3e-07 59.3 59 49.2
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 6.8e-07 57.8 41 61.0


User provided reference genes

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