Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 2.0e-50 202.2 110 100.0
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 2.9e-12 75.5 54 77.8
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 2.9e-12 75.5 48 85.4
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 2.4e-11 72.4 48 81.2
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 2.1e-10 69.3 93 52.7
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.7e-10 68.9 48 77.1
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 3.5e-10 68.6 50 78.0
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 4.6e-10 68.2 65 66.2
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 4.6e-10 68.2 65 64.6
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 7.8e-10 67.4 65 64.6
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 7.8e-10 67.4 65 64.6
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 7.8e-10 67.4 65 64.6
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 7.8e-10 67.4 65 66.2
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 7.8e-10 67.4 65 66.2
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 7.8e-10 67.4 65 66.2
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 7.8e-10 67.4 65 66.2
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 7.8e-10 67.4 65 63.1
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 7.8e-10 67.4 65 64.6
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 7.8e-10 67.4 65 66.2
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 1.0e-09 67.0 48 72.9
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 1.0e-09 67.0 65 63.1
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 1.3e-09 66.6 48 77.1
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 1.3e-09 66.6 65 64.6
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 1.7e-09 66.2 93 50.5
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 1.7e-09 66.2 65 64.6
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 1.7e-09 66.2 65 64.6
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 1.7e-09 66.2 48 75.0
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 2.3e-09 65.9 65 63.1
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 2.3e-09 65.9 65 63.1
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 2.3e-09 65.9 65 64.6
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 2.3e-09 65.9 65 64.6
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 3.0e-09 65.5 65 61.5
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 3.9e-09 65.1 65 63.1
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 3.9e-09 65.1 65 63.1
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 3.9e-09 65.1 65 61.5
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 3.9e-09 65.1 48 72.9
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 3.9e-09 65.1 48 72.9
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 3.9e-09 65.1 48 72.9
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 3.9e-09 65.1 48 72.9
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 3.9e-09 65.1 65 63.1
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 5.1e-09 64.7 65 63.1
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 5.1e-09 64.7 68 61.8
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 5.1e-09 64.7 65 63.1
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 5.1e-09 64.7 65 63.1
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 5.1e-09 64.7 65 63.1
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 5.1e-09 64.7 65 63.1
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 5.1e-09 64.7 65 63.1
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 6.6e-09 64.3 65 61.5
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 6.6e-09 64.3 65 61.5
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 6.6e-09 64.3 93 46.2
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 6.6e-09 64.3 65 60.0
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 6.6e-09 64.3 93 48.4
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 6.6e-09 64.3 48 72.9
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 6.6e-09 64.3 90 51.1
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 8.7e-09 63.9 65 61.5
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 8.7e-09 63.9 65 61.5
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 8.7e-09 63.9 93 48.4
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 8.7e-09 63.9 48 72.9
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 8.7e-09 63.9 65 64.6
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 1.1e-08 63.5 50 70.0
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 1.1e-08 63.5 93 48.4
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 1.5e-08 63.2 65 63.1
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 1.5e-08 63.2 93 47.3
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 1.5e-08 63.2 65 61.5
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 1.9e-08 62.8 65 60.0
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 1.9e-08 62.8 63 61.9
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 2.5e-08 62.4 93 48.4
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 3.3e-08 62.0 65 60.0
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 3.3e-08 62.0 65 61.5
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 3.3e-08 62.0 65 60.0
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 3.3e-08 62.0 65 60.0
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 4.3e-08 61.6 93 47.3
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 4.3e-08 61.6 93 47.3
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 5.6e-08 61.2 65 60.0
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 5.6e-08 61.2 48 70.8
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 5.6e-08 61.2 65 61.5
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 7.3e-08 60.8 48 66.7
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 7.3e-08 60.8 48 66.7
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 7.3e-08 60.8 93 47.3
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 7.3e-08 60.8 65 61.5
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 9.6e-08 60.5 65 61.5
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 9.6e-08 60.5 65 61.5
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 1.3e-07 60.1 46 71.7
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 1.3e-07 60.1 46 71.7
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 1.3e-07 60.1 49 67.3
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.6e-07 59.7 65 60.0
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 1.6e-07 59.7 65 61.5
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 1.6e-07 59.7 65 61.5
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 1.6e-07 59.7 48 64.6
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 2.1e-07 59.3 48 72.9
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 2.1e-07 59.3 65 60.0
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 2.8e-07 58.9 48 64.6
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 3.6e-07 58.5 65 60.0
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 3.6e-07 58.5 46 69.6
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 4.8e-07 58.2 93 46.2
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 4.8e-07 58.2 48 64.6
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 6.2e-07 57.8 64 60.9
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 8.1e-07 57.4 62 59.7
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 1.1e-06 57.0 48 62.5
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.4e-06 56.6 48 64.6
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 1.4e-06 56.6 65 55.4
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 1.8e-06 56.2 65 56.9
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 1.8e-06 56.2 65 56.9
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 3.1e-06 55.5 65 56.9
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 3.1e-06 55.5 61 59.0
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 5.3e-06 54.7 65 55.4
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 5.3e-06 54.7 39 76.9
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 9.0e-06 53.9 48 62.5


User provided reference genes

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