Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p046502 Quercus lobata HOM05D016724 ORTHO05D017903 8.4e-205 716.8 375 100.0
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 1.0e-61 241.5 337 47.2
RcHm_v2.0_Chr5g0010561 Rosa chinensis HOM05D016724 ORTHO05D017903 5.4e-18 96.3 421 29.7
MD10G1281200 Malus domestica HOM05D016724 ORTHO05D017903 1.0e-16 92.0 387 28.2
FvH4_3g07930 Fragaria vesca HOM05D016724 ORTHO05D017903 2.9e-16 90.5 411 27.3
FAN11G3468 Fragaria x ananassa HOM05D016724 ORTHO05D017903 1.9e-15 87.8 412 27.4
FAN16G0791 Fragaria x ananassa HOM05D016724 ORTHO05D017903 1.9e-15 87.8 412 27.4
CANSAT64G2099 Cannabis sativa HOM05D004563 ORTHO05D002944 6.8e-13 79.3 401 25.7
FAN21G3782 Fragaria x ananassa HOM05D016724 ORTHO05D017903 7.5e-12 75.9 412 26.2
Dinv40663 Davidia involucrata HOM05D014353 ORTHO05D002944 1.7e-11 74.7 243 31.3
Potri.004G055300 Populus trichocarpa HOM05D023908 ORTHO05D002944 1.7e-11 74.7 367 28.1
CSS0006802 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 6.4e-11 72.8 424 24.3
Potri.011G065100 Populus trichocarpa HOM05D023908 ORTHO05D002944 8.3e-11 72.4 364 28.6
TAR624G1329 Trochodendron aralioides HOM05D004563 ORTHO05D002944 3.2e-10 70.5 454 23.6
Eucgr.A01904 Eucalyptus grandis HOM05D004563 ORTHO05D002944 5.4e-10 69.7 431 24.1
TWI38G0720 Tripterygium wilfordii HOM05D032972 ORTHO05D037803 5.4e-10 69.7 423 24.1
PGSC0003DMG400020429 Solanum tuberosum HOM05D004563 ORTHO05D002944 1.2e-09 68.6 395 26.6
Gorai.011G033900 Gossypium raimondii HOM05D004563 ORTHO05D002944 1.6e-09 68.2 372 25.8
Gohir.D10G032200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 2.0e-09 67.8 372 26.3
Aqoxy1G03185 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 2.7e-09 67.4 99 40.4
Duzib192G1010 Durio zibethinus HOM05D004563 ORTHO05D017903 2.7e-09 67.4 359 27.0
Thecc.01G148500 Theobroma cacao HOM05D004563 ORTHO05D002944 2.7e-09 67.4 403 24.8
Actinidia10974 Actinidia chinensis HOM05D004563 ORTHO05D002944 4.6e-09 66.6 422 25.8
Dinv15459 Davidia involucrata HOM05D004563 ORTHO05D002944 4.6e-09 66.6 315 28.9
Gorai.010G159000 Gossypium raimondii HOM05D004563 ORTHO05D002944 4.6e-09 66.6 122 38.5
Duzib235G1377 Durio zibethinus HOM05D004563 ORTHO05D002944 7.8e-09 65.9 127 35.4
TAR626G0367 Trochodendron aralioides HOM05D004563 ORTHO05D002944 1.0e-08 65.5 96 42.7
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.7e-08 64.7 310 24.8
Gohir.D06G136800 Gossypium hirsutum HOM05D004563 ORTHO05D002944 1.7e-08 64.7 122 37.7
CiPaw.04G131700 Carya illinoinensis HOM05D004563 ORTHO05D002944 2.3e-08 64.3 120 39.2
Dinv04617 Davidia involucrata HOM05D000845 ORTHO05D003813 3.9e-08 63.5 298 29.2
FAN25G1620 Fragaria x ananassa HOM05D016724 ORTHO05D017903 3.9e-08 63.5 193 31.6
Manes.13G138000 Manihot esculenta HOM05D004563 ORTHO05D002944 3.9e-08 63.5 94 41.5
Gohir.A10G031400 Gossypium hirsutum HOM05D004563 ORTHO05D002944 5.0e-08 63.2 372 25.3
Nn1g09097 Nelumbo nucifera HOM05D004563 ORTHO05D002944 5.0e-08 63.2 285 24.6
TWI59G1400 Tripterygium wilfordii HOM05D004563 ORTHO05D002944 6.6e-08 62.8 77 45.5
Atru.chr6.2814 Acer truncatum HOM05D004563 ORTHO05D002944 8.6e-08 62.4 64 46.9
Ciclev10015391m.g Citrus clementina HOM05D004563 ORTHO05D002944 8.6e-08 62.4 428 23.6
Manes.17G054601 Manihot esculenta HOM05D023908 ORTHO05D002944 1.5e-07 61.6 313 27.5
Oeu032703.1 Olea europaea HOM05D004563 ORTHO05D002944 1.5e-07 61.6 415 24.1
Dinv03911 Davidia involucrata HOM05D004563 ORTHO05D002944 2.5e-07 60.8 250 28.0
Nitab4.5_0003827g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 2.5e-07 60.8 414 25.1
Solyc07g053320.4 Solanum lycopersicum HOM05D004563 ORTHO05D002944 2.5e-07 60.8 388 25.5
Actinidia11133 Actinidia chinensis HOM05D004563 ORTHO05D002944 4.3e-07 60.1 429 24.2
Sabra04G0036000 Salix brachista HOM05D023908 ORTHO05D002944 4.3e-07 60.1 360 26.1
HanXRQChr17g0557991 Helianthus annuus HOM05D004563 ORTHO05D002944 7.3e-07 59.3 380 23.7
Sed0020403 Sechium edule HOM05D004563 ORTHO05D002944 9.5e-07 58.9 406 23.9
arahy.Tifrunner.gnm1.ann1.B2LHN7 Arachis hypogaea HOM05D004563 ORTHO05D002944 1.2e-06 58.5 95 36.8
Lj3g0000357 Lotus japonicus HOM05D004563 ORTHO05D002944 1.2e-06 58.5 111 30.6
Prupe.3G122900 Prunus persica HOM05D004563 ORTHO05D002944 1.6e-06 58.2 444 24.3
TAR629G2655 Trochodendron aralioides HOM05D004563 ORTHO05D002944 1.6e-06 58.2 430 24.9
vmacro12368 Vaccinium macrocarpon HOM05D004563 ORTHO05D002944 1.6e-06 58.2 412 23.3
MSTRG.14316 Avicennia marina HOM05D004563 ORTHO05D002944 2.1e-06 57.8 72 45.8
Dinv14970 Davidia involucrata HOM05D008023 ORTHO05D002944 2.8e-06 57.4 136 33.8
Lsat_1_v5_gn_8_140081 Lactuca sativa HOM05D004563 ORTHO05D002944 2.8e-06 57.4 124 33.9
Sed0004710 Sechium edule HOM05D004563 ORTHO05D002944 2.8e-06 57.4 64 45.3
Atru.chr10.1682 Acer truncatum HOM05D023908 ORTHO05D002944 3.6e-06 57.0 282 25.2
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 4.7e-06 56.6 165 32.1
MELO3C019761.2 Cucumis melo HOM05D004563 ORTHO05D002944 4.7e-06 56.6 64 45.3
CsaV3_6G018840 Cucumis sativus L. HOM05D004563 ORTHO05D002944 4.7e-06 56.6 64 45.3
PGR042G0272 Punica granatum HOM05D004563 ORTHO05D002944 4.7e-06 56.6 405 23.0
Haze_13348 Corylus avellana HOM05D004563 ORTHO05D002944 6.2e-06 56.2 219 29.2
TWI63G0650 Tripterygium wilfordii HOM05D032972 ORTHO05D037803 6.2e-06 56.2 374 24.6


User provided reference genes

Program Settings