Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 2.8e-80 302.0 161 100.0
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 2.1e-48 196.1 166 72.3
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 2.1e-43 179.5 168 66.7
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.8e-42 176.4 138 76.1
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 1.8e-42 176.4 138 76.1
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.3e-42 176.0 134 77.6
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 6.7e-42 174.5 161 67.7
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 8.7e-42 174.1 131 76.3
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 1.9e-41 172.9 158 66.5
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 4.3e-41 171.8 158 65.2
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 4.3e-41 171.8 155 67.7
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 4.3e-41 171.8 160 66.2
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 1.6e-40 169.9 158 64.6
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 1.6e-40 169.9 163 65.6
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 3.7e-40 168.7 163 66.9
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 6.2e-40 167.9 147 69.4
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 1.1e-39 167.2 158 64.6
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 3.1e-39 165.6 166 63.3
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 4.0e-39 165.2 163 66.3
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 6.9e-39 164.5 163 65.6
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 6.9e-39 164.5 149 69.1
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 9.0e-39 164.1 161 67.7
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 9.0e-39 164.1 109 81.7
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 1.5e-38 163.3 165 64.2
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 2.0e-38 162.9 161 67.1
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 2.0e-38 162.9 161 67.1
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 2.6e-38 162.5 133 72.2
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 1.0e-37 160.6 132 73.5
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 2.2e-37 159.5 164 65.2
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 2.9e-37 159.1 169 63.3
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 8.4e-37 157.5 133 69.9
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 8.4e-37 157.5 161 64.0
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 1.4e-36 156.8 163 63.8
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 3.2e-36 155.6 140 67.9
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 3.2e-36 155.6 132 68.9
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 4.2e-36 155.2 149 68.5
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 1.2e-35 153.7 164 62.8
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 1.2e-35 153.7 164 62.8
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 1.6e-35 153.3 148 69.6
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 2.7e-35 152.5 133 71.4
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 1.0e-34 150.6 134 66.4
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 1.0e-34 150.6 134 66.4
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 1.3e-34 150.2 136 69.9
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 3.0e-34 149.1 132 67.4
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 3.0e-34 149.1 132 67.4
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 8.7e-34 147.5 137 67.2
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 1.1e-33 147.1 197 51.8
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 2.5e-33 146.0 133 68.4
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 4.3e-33 145.2 159 57.9
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 5.7e-33 144.8 134 68.7
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 9.7e-33 144.1 153 60.8
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 2.2e-32 142.9 153 60.8
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 2.2e-32 142.9 148 60.8
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 2.8e-32 142.5 133 65.4
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 1.1e-31 140.6 162 59.9
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 1.8e-31 139.8 162 59.9
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 3.1e-31 139.0 140 61.4
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 4.1e-31 138.7 141 62.4
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 5.3e-31 138.3 123 68.3
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 5.3e-31 138.3 145 60.0
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 6.9e-31 137.9 159 56.6
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 2.6e-30 136.0 133 64.7
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 3.4e-30 135.6 135 67.4
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 3.4e-30 135.6 132 62.9
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 7.6e-30 134.4 133 64.7
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 1.0e-29 134.0 135 63.7
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 2.2e-29 132.9 143 61.5
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 2.2e-29 132.9 153 58.8
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 2.9e-29 132.5 135 63.0
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 8.5e-29 131.0 135 63.0
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 8.5e-29 131.0 132 60.6
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 1.4e-28 130.2 165 57.0
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 1.4e-28 130.2 165 57.0
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 1.4e-28 130.2 151 58.3
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 2.5e-28 129.4 133 63.9
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 3.2e-28 129.0 134 63.4
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 3.2e-28 129.0 133 63.2
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 4.2e-28 128.6 133 62.4
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 5.5e-28 128.3 134 61.2
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 5.5e-28 128.3 134 61.2
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 9.3e-28 127.5 162 56.2
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 9.3e-28 127.5 138 60.9
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 9.3e-28 127.5 127 66.1
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 1.6e-27 126.7 139 60.4
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 2.1e-27 126.3 123 67.5
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 2.1e-27 126.3 133 59.4
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 2.7e-27 125.9 134 60.4
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 3.6e-27 125.6 136 61.8
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 3.6e-27 125.6 145 58.6
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 4.6e-27 125.2 163 55.2
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 1.3e-26 123.6 136 61.8
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 1.3e-26 123.6 134 61.2
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 2.3e-26 122.9 163 54.6
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 3.9e-26 122.1 132 59.8
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 5.1e-26 121.7 140 62.1
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 6.7e-26 121.3 132 60.6
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 6.7e-26 121.3 132 60.6
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 6.7e-26 121.3 132 60.6
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 8.8e-26 120.9 163 54.6
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 8.8e-26 120.9 136 61.0
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 8.8e-26 120.9 153 55.6
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 3.3e-25 119.0 83 77.1
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 4.3e-25 118.6 127 62.2
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 4.3e-25 118.6 135 60.0
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 1.8e-23 113.2 151 55.0
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 1.8e-23 113.2 78 78.2
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 3.1e-23 112.5 150 54.0
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 6.9e-23 111.3 94 71.3
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 6.9e-23 111.3 94 71.3
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 6.9e-23 111.3 105 65.7
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 5.9e-22 108.2 154 53.2
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 5.9e-22 108.2 87 71.3
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 1.0e-21 107.5 72 80.6
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 1.0e-21 107.5 72 81.9
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 2.9e-21 105.9 98 64.3
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 5.0e-21 105.1 87 70.1
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 4.2e-20 102.1 101 64.4
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 2.3e-18 96.3 133 54.1
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 3.9e-18 95.5 133 51.1
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 3.7e-16 89.0 120 50.8
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 1.1e-12 77.4 132 50.8
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 5.5e-12 75.1 56 75.0
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 3.6e-11 72.4 134 48.5
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 6.1e-11 71.6 105 51.4
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 6.1e-11 71.6 135 49.6
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 1.4e-10 70.5 86 55.8
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 1.1e-09 67.4 113 51.3
Nn3g19836 Nelumbo nucifera HOM05D005954 ORTHO05D007347 9.1e-07 57.8 43 74.4


User provided reference genes

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