Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p045866 Quercus lobata HOM05D001967 ORTHO05D001929 9.1e-44 179.9 92 100.0
QL05p045171 Quercus lobata HOM05D001967 ORTHO05D001929 3.4e-43 177.9 92 98.9
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 2.4e-12 75.5 50 76.0
CSS0034362 Camellia sinensis var. sinensis HOM05D001967 ORTHO05D001929 7.0e-12 73.9 40 92.5
Dinv28308 Davidia involucrata HOM05D001967 ORTHO05D001929 7.0e-12 73.9 40 92.5
Dinv40203 Davidia involucrata HOM05D001967 ORTHO05D001929 7.0e-12 73.9 40 92.5
Oeu012538.2 Olea europaea HOM05D001967 ORTHO05D001929 7.0e-12 73.9 40 92.5
QL06p053245 Quercus lobata HOM05D001967 ORTHO05D001929 7.0e-12 73.9 40 92.5
PGR083G1401 Punica granatum HOM05D001967 ORTHO05D001929 1.2e-11 73.2 51 68.6
CiPaw.08G182200 Carya illinoinensis HOM05D001967 ORTHO05D001929 1.6e-11 72.8 40 90.0
Hma1.2p1_0085F.1_g044500 Hydrangea macrophylla HOM05D001967 ORTHO05D001929 1.6e-11 72.8 40 90.0
MBI05_g21105_MAGBIO Magnolia biondii HOM05D001967 ORTHO05D001929 1.6e-11 72.8 40 90.0
GSVIVG01022303001 Vitis vinifera HOM05D001967 ORTHO05D001929 1.6e-11 72.8 40 90.0
ATR0807G156 Amborella trichopoda HOM05D001967 ORTHO05D001929 2.0e-11 72.4 40 87.5
Cc07_g12030 Coffea canephora HOM05D001967 ORTHO05D001929 2.0e-11 72.4 40 87.5
HanXRQChr16g0531981 Helianthus annuus HOM05D001967 ORTHO05D001929 3.5e-11 71.6 40 87.5
Lsat_1_v5_gn_3_69860 Lactuca sativa HOM05D001967 ORTHO05D001929 3.5e-11 71.6 40 87.5
PSO170G4897 Papaver somniferum HOM05D001967 ORTHO05D001929 3.5e-11 71.6 40 87.5
PSO210G4686 Papaver somniferum HOM05D001967 ORTHO05D001929 3.5e-11 71.6 40 87.5
TAR628G1224 Trochodendron aralioides HOM05D001967 ORTHO05D001929 3.5e-11 71.6 40 87.5
Cpa.g.sc6.356 Carica papaya HOM05D001967 ORTHO05D001929 4.5e-11 71.2 40 87.5
MBI08_g06886_MAGBIO Magnolia biondii HOM05D001967 ORTHO05D001929 4.5e-11 71.2 40 87.5
Manes.18G003200 Manihot esculenta HOM05D001967 ORTHO05D001929 4.5e-11 71.2 40 87.5
Sc15g0004110 Simmondsia chinensis HOM05D001967 ORTHO05D001929 4.5e-11 71.2 40 87.5
Cfa007100 Carpinus fangiana HOM05D001967 ORTHO05D001929 5.9e-11 70.9 40 87.5
AUR62035152 Chenopodium quinoa HOM05D001967 ORTHO05D001929 5.9e-11 70.9 39 89.7
Duzib041G0204 Durio zibethinus HOM05D001967 ORTHO05D001929 5.9e-11 70.9 52 67.3
MD02G1113600 Malus domestica HOM05D001967 ORTHO05D001929 5.9e-11 70.9 40 87.5
MD15G1228800 Malus domestica HOM05D001967 ORTHO05D001929 5.9e-11 70.9 40 87.5
Prupe.7G185300 Prunus persica HOM05D001967 ORTHO05D001929 5.9e-11 70.9 40 87.5
CDE06G0397 Ceratophyllum demersum HOM05D001967 ORTHO05D001929 7.8e-11 70.5 40 85.0
CDE06G2203 Ceratophyllum demersum HOM05D001967 ORTHO05D001929 7.8e-11 70.5 40 85.0
THA.LOC104806873 Tarenaya hassleriana HOM05D001967 ORTHO05D001929 7.8e-11 70.5 40 85.0
THA.LOC104813181 Tarenaya hassleriana HOM05D001967 ORTHO05D001929 7.8e-11 70.5 40 85.0
Dinv31973 Davidia involucrata HOM05D001967 ORTHO05D001929 1.0e-10 70.1 40 82.5
Thecc.08G063300 Theobroma cacao HOM05D001967 ORTHO05D001929 1.0e-10 70.1 40 82.5
TWI53G1787 Tripterygium wilfordii HOM05D001967 ORTHO05D001929 1.0e-10 70.1 40 85.0
Aa31sc158G20 Aethionema arabicum HOM05D000557 ORTHO05D002315 1.3e-10 69.7 40 82.5
Ah.00g001080 Amaranthus hybridus HOM05D001967 ORTHO05D001929 1.3e-10 69.7 39 87.2
AL1G51420 Arabidopsis lyrata HOM05D001967 ORTHO05D001929 1.3e-10 69.7 40 82.5
AT1G42960 Arabidopsis thaliana HOM05D001967 ORTHO05D001929 1.3e-10 69.7 40 82.5
EL10Ac1g01900 Beta vulgaris HOM05D001967 ORTHO05D001929 1.3e-10 69.7 39 87.2
Carub.0001s3434 Capsella rubella HOM05D001967 ORTHO05D001929 1.3e-10 69.7 40 82.5
CARHR035220 Cardamine hirsuta HOM05D001967 ORTHO05D001929 1.3e-10 69.7 40 82.5
COL.COLO4_05641 Corchorus olitorius HOM05D001967 ORTHO05D001929 1.3e-10 69.7 40 82.5
MD00G1135400 Malus domestica HOM05D001967 ORTHO05D001929 1.3e-10 69.7 40 85.0
DCAR_009862 Daucus carota HOM05D001967 ORTHO05D001929 1.7e-10 69.3 39 87.2
Gohir.A02G085600 Gossypium hirsutum HOM05D001967 ORTHO05D001929 1.7e-10 69.3 40 82.5
Gohir.D02G101300 Gossypium hirsutum HOM05D001967 ORTHO05D001929 1.7e-10 69.3 40 82.5
Gorai.005G114700 Gossypium raimondii HOM05D001967 ORTHO05D001929 1.7e-10 69.3 40 82.5
MD06G1006300 Malus domestica HOM05D001967 ORTHO05D001929 1.7e-10 69.3 40 82.5
Manes.05G125300 Manihot esculenta HOM05D001967 ORTHO05D001929 1.7e-10 69.3 40 87.5
Prupe.5G007900 Prunus persica HOM05D001967 ORTHO05D001929 1.7e-10 69.3 40 82.5
arahy.Tifrunner.gnm1.ann1.0W4FI5 Arachis hypogaea HOM05D001967 ORTHO05D001929 2.3e-10 68.9 40 82.5
arahy.Tifrunner.gnm1.ann1.29ZW60 Arachis hypogaea HOM05D001967 ORTHO05D001929 2.3e-10 68.9 40 82.5
CiPaw.08G076000 Carya illinoinensis HOM05D001967 ORTHO05D001929 2.3e-10 68.9 40 82.5
Eucgr.F01794 Eucalyptus grandis HOM05D001967 ORTHO05D001929 2.3e-10 68.9 40 82.5
Glyma.11G087400 Glycine max HOM05D001967 ORTHO05D001929 2.3e-10 68.9 40 82.5
Sabra07G0051600 Salix brachista HOM05D001967 ORTHO05D001929 2.3e-10 68.9 47 72.3
BcaB04g17774 Brassica carinata HOM05D001967 ORTHO05D001929 2.9e-10 68.6 40 80.0
BcaC07g37452 Brassica carinata HOM05D001967 ORTHO05D001929 2.9e-10 68.6 40 80.0
C08p09240 Brassica napus HOM05D001967 ORTHO05D001929 2.9e-10 68.6 40 80.0
BolC8t47773H Brassica oleracea HOM05D001967 ORTHO05D001929 2.9e-10 68.6 40 80.0
Thhalv10005036m.g Eutrema salsugineum HOM05D001967 ORTHO05D001929 2.9e-10 68.6 40 80.0
Nn6g31669 Nelumbo nucifera HOM05D001967 ORTHO05D001929 2.9e-10 68.6 39 84.6
Sp1g32110 Schrenkiella parvula HOM05D001967 ORTHO05D001929 2.9e-10 68.6 40 80.0
TAR376G0952 Trochodendron aralioides HOM05D001967 ORTHO05D001929 3.8e-10 68.2 40 82.5
Ciclev10002493m.g Citrus clementina HOM05D001967 ORTHO05D001929 5.0e-10 67.8 42 85.7
Potri.007G064100 Populus trichocarpa HOM05D001967 ORTHO05D001929 5.0e-10 67.8 40 80.0
GSVIVG01013404001 Vitis vinifera HOM05D001967 ORTHO05D001929 5.0e-10 67.8 39 84.6
Cfa014119 Carpinus fangiana HOM05D001967 ORTHO05D001929 6.6e-10 67.4 40 80.0
CiPaw.07G135300 Carya illinoinensis HOM05D001967 ORTHO05D001929 6.6e-10 67.4 40 80.0
ClCG11G018900 Citrullus lanatus HOM05D001967 ORTHO05D001929 6.6e-10 67.4 39 82.1
Haze_22839 Corylus avellana HOM05D001967 ORTHO05D001929 6.6e-10 67.4 40 80.0
Glyma.01G157600 Glycine max HOM05D001967 ORTHO05D001929 6.6e-10 67.4 40 80.0
Lalb_Chr05g0214901 Lupinus albus HOM05D001967 ORTHO05D001929 6.6e-10 67.4 40 80.0
MBI05_g21106_MAGBIO Magnolia biondii HOM05D001967 ORTHO05D001929 6.6e-10 67.4 40 90.0
Potri.005G254200 Populus trichocarpa HOM05D001967 ORTHO05D001929 6.6e-10 67.4 39 84.6
PGR119G2119 Punica granatum HOM05D001967 ORTHO05D001929 6.6e-10 67.4 39 84.6
Sed0020344 Sechium edule HOM05D001967 ORTHO05D001929 6.6e-10 67.4 39 82.1
TWI36G0255 Tripterygium wilfordii HOM05D001967 ORTHO05D001929 6.6e-10 67.4 40 80.0
VMungo1215G2446 Vigna mungo HOM05D001967 ORTHO05D001929 6.6e-10 67.4 40 75.0
A08p07660 Brassica napus HOM05D001967 ORTHO05D001929 8.6e-10 67.0 40 77.5
BraA08t32780Z Brassica rapa HOM05D001967 ORTHO05D001929 8.6e-10 67.0 40 77.5
FAN19G0840 Fragaria x ananassa HOM05D001967 ORTHO05D001929 8.6e-10 67.0 47 70.2
FAN23G0601 Fragaria x ananassa HOM05D001967 ORTHO05D001929 8.6e-10 67.0 47 70.2
FAN26G0578 Fragaria x ananassa HOM05D001967 ORTHO05D001929 8.6e-10 67.0 47 70.2
FAN28G2793 Fragaria x ananassa HOM05D001967 ORTHO05D001929 8.6e-10 67.0 47 70.2
Glyma.04G015800 Glycine max HOM05D001967 ORTHO05D001929 8.6e-10 67.0 39 82.1
MELO3C017045.2 Cucumis melo HOM05D001967 ORTHO05D001929 1.1e-09 66.6 39 79.5
Phvul.009G006700 Phaseolus vulgaris HOM05D001967 ORTHO05D001929 1.1e-09 66.6 39 79.5
VMungo1309G1464 Vigna mungo HOM05D001967 ORTHO05D001929 1.1e-09 66.6 39 79.5
Eucgr.I02214 Eucalyptus grandis HOM05D001967 ORTHO05D001929 1.5e-09 66.2 39 84.6
Glyma.06G015800 Glycine max HOM05D001967 ORTHO05D001929 1.5e-09 66.2 39 79.5
Ca_24992_v3 Cicer arietinum L. HOM05D001967 ORTHO05D001929 1.9e-09 65.9 40 80.0
Duzib116G0687 Durio zibethinus HOM05D001967 ORTHO05D001929 1.9e-09 65.9 40 80.0
Lj1g0012342 Lotus japonicus HOM05D001967 ORTHO05D001929 1.9e-09 65.9 39 79.5
Phvul.002G117800 Phaseolus vulgaris HOM05D001967 ORTHO05D001929 1.9e-09 65.9 40 72.5
TPR.G33780 Trifolium pratense HOM05D001967 ORTHO05D001929 1.9e-09 65.9 40 80.0
HanXRQChr05g0144791 Helianthus annuus HOM05D001967 ORTHO05D001929 2.5e-09 65.5 40 82.5
Sabra05G0081700 Salix brachista HOM05D001967 ORTHO05D001929 2.5e-09 65.5 40 75.0
TWI12G0573 Tripterygium wilfordii HOM05D001967 ORTHO05D001929 2.5e-09 65.5 39 79.5
CANSAT54G2719 Cannabis sativa HOM05D001967 ORTHO05D001929 3.3e-09 65.1 40 77.5
Lj2A502T33 Lonicera japonica HOM05D001967 ORTHO05D001929 4.3e-09 64.7 40 80.0
CSS0016090 Camellia sinensis var. sinensis HOM05D001967 ORTHO05D001929 5.6e-09 64.3 40 75.0
Gohir.A01G102900 Gossypium hirsutum HOM05D001967 ORTHO05D001929 5.6e-09 64.3 40 77.5
Gohir.D01G088200 Gossypium hirsutum HOM05D001967 ORTHO05D001929 5.6e-09 64.3 40 77.5
Gorai.002G113900 Gossypium raimondii HOM05D001967 ORTHO05D001929 5.6e-09 64.3 40 77.5
Hma1.2p1_0612F.1_g188960 Hydrangea macrophylla HOM05D001967 ORTHO05D001929 5.6e-09 64.3 39 76.9
Aqoxy6G01570 Aquilegia oxysepala HOM05D001967 ORTHO05D001929 7.3e-09 63.9 39 76.9
Solyc12g094630.2 Solanum lycopersicum HOM05D001967 ORTHO05D001929 7.3e-09 63.9 39 82.1
Sopen12g031530 Solanum pennellii HOM05D001967 ORTHO05D001929 7.3e-09 63.9 39 82.1
PGSC0003DMG400029407 Solanum tuberosum HOM05D001967 ORTHO05D001929 7.3e-09 63.9 39 82.1
Lalb_Chr09g0324801 Lupinus albus HOM05D001967 ORTHO05D001929 9.5e-09 63.5 40 72.5
Lj4A239T48 Lonicera japonica HOM05D001967 ORTHO05D001929 1.2e-08 63.2 55 65.5
Lalb_Chr23g0265631 Lupinus albus HOM05D001967 ORTHO05D001929 1.2e-08 63.2 39 76.9
Medtr5g024680 Medicago truncatula HOM05D001967 ORTHO05D001929 1.2e-08 63.2 40 75.0
Atru.chr13.91 Acer truncatum HOM05D001967 ORTHO05D001929 1.6e-08 62.8 43 74.4
COL.COLO4_37861 Corchorus olitorius HOM05D001967 ORTHO05D001929 1.6e-08 62.8 44 65.9
Nitab4.5_0000407g0090 Nicotiana tabacum HOM05D001967 ORTHO05D001929 1.6e-08 62.8 39 79.5
Nitab4.5_0006485g0020 Nicotiana tabacum HOM05D001967 ORTHO05D001929 1.6e-08 62.8 39 79.5
Peaxi162Scf00064g01327 Petunia axillaris HOM05D001967 ORTHO05D001929 1.6e-08 62.8 39 79.5
PGR031G1932 Punica granatum HOM05D001967 ORTHO05D001929 1.6e-08 62.8 40 72.5
FvH4_5g25770 Fragaria vesca HOM05D001967 ORTHO05D001929 2.8e-08 62.0 40 72.5
FAN04G3258 Fragaria x ananassa HOM05D001967 ORTHO05D001929 2.8e-08 62.0 40 72.5
RcHm_v2.0_Chr2g0096941 Rosa chinensis HOM05D001967 ORTHO05D001929 2.8e-08 62.0 47 61.7
HPP92_012828 Vanilla planifolia HOM05D001967 ORTHO05D001929 2.8e-08 62.0 40 72.5
Actinidia28750 Actinidia chinensis HOM05D001967 ORTHO05D001929 3.6e-08 61.6 40 75.0
Nitab4.5_0009646g0040 Nicotiana tabacum HOM05D001967 ORTHO05D001929 3.6e-08 61.6 39 76.9
Peaxi162Scf00680g00037 Petunia axillaris HOM05D001967 ORTHO05D001929 3.6e-08 61.6 39 76.9
RcHm_v2.0_Chr7g0216241 Rosa chinensis HOM05D001967 ORTHO05D001929 3.6e-08 61.6 40 70.0
Solyc04g082640.3 Solanum lycopersicum HOM05D001967 ORTHO05D001929 3.6e-08 61.6 39 76.9
Sopen04g036270 Solanum pennellii HOM05D001967 ORTHO05D001929 3.6e-08 61.6 39 76.9
PGSC0003DMG400009993 Solanum tuberosum HOM05D001967 ORTHO05D001929 3.6e-08 61.6 39 76.9
Actinidia15512 Actinidia chinensis HOM05D001967 ORTHO05D001929 4.7e-08 61.2 40 75.0
Actinidia17065 Actinidia chinensis HOM05D001967 ORTHO05D001929 4.7e-08 61.2 40 75.0
CAN.G208.28 Capsicum annuum HOM05D001967 ORTHO05D001929 4.7e-08 61.2 39 76.9
Lj2g0013657 Lotus japonicus HOM05D001967 ORTHO05D001929 6.1e-08 60.8 42 73.8
Nn5g31019 Nelumbo nucifera HOM05D001967 ORTHO05D001929 6.1e-08 60.8 39 82.1
QL02p015248 Quercus lobata HOM05D001967 ORTHO05D001929 6.1e-08 60.8 40 72.5
QL03p010156 Quercus lobata HOM05D001967 ORTHO05D001929 6.1e-08 60.8 36 83.3
TPR.G38097 Trifolium pratense HOM05D001967 ORTHO05D001929 6.1e-08 60.8 39 71.8
MSTRG.24506 Avicennia marina HOM05D001967 ORTHO05D001929 8.0e-08 60.5 39 74.4
Cc10_g00400 Coffea canephora HOM05D001967 ORTHO05D001929 8.0e-08 60.5 40 72.5
Eucgr.F03576 Eucalyptus grandis HOM05D001967 ORTHO05D001929 8.0e-08 60.5 40 67.5
Lsat_1_v5_gn_2_1441 Lactuca sativa HOM05D001967 ORTHO05D001929 8.0e-08 60.5 40 72.5
Hund05088 Selenicereus undatus HOM05D001967 ORTHO05D001929 8.0e-08 60.5 39 74.4
ECA232G1934 Erigeron canadensis HOM05D001967 ORTHO05D001929 1.0e-07 60.1 40 72.5
Migut.N02975 Erythranthe guttata HOM05D001967 ORTHO05D001929 1.0e-07 60.1 39 74.4
Psat5g010480 Pisum sativum HOM05D001967 ORTHO05D001929 1.0e-07 60.1 39 69.2
Psat5g246600 Pisum sativum HOM05D001967 ORTHO05D001929 1.0e-07 60.1 39 69.2
Ca_15397_v3 Cicer arietinum L. HOM05D001967 ORTHO05D001929 1.4e-07 59.7 39 69.2
QL11p008146 Quercus lobata HOM05D001967 ORTHO05D001929 1.4e-07 59.7 36 83.3
QL11p008296 Quercus lobata HOM05D001967 ORTHO05D001929 1.4e-07 59.7 36 83.3
arahy.Tifrunner.gnm1.ann1.33TIY8 Arachis hypogaea HOM05D001967 ORTHO05D001929 1.8e-07 59.3 40 67.5
arahy.Tifrunner.gnm1.ann1.LD9RN9 Arachis hypogaea HOM05D001967 ORTHO05D001929 1.8e-07 59.3 40 67.5
Psat2g148360 Pisum sativum HOM05D001967 ORTHO05D001929 1.8e-07 59.3 40 70.0
SGA_v2.0_scaffold54G19636 Striga asiatica HOM05D000557 ORTHO05D002315 1.8e-07 59.3 40 70.0
MSTRG.22090 Avicennia marina HOM05D001967 ORTHO05D001929 2.3e-07 58.9 39 71.8
HanXRQChr14g0427821 Helianthus annuus HOM05D001967 ORTHO05D001929 2.3e-07 58.9 40 70.0
Oeu017904.1 Olea europaea HOM05D001967 ORTHO05D001929 2.3e-07 58.9 41 78.0
unitig_0.g2076 Utricularia gibba HOM05D001967 ORTHO05D001929 2.3e-07 58.9 39 71.8
Lj4A810G55 Lonicera japonica HOM05D001967 ORTHO05D001929 3.0e-07 58.5 40 67.5
Medtr3g115930 Medicago truncatula HOM05D001967 ORTHO05D001929 3.0e-07 58.5 39 69.2
CsaV3_4G037500 Cucumis sativus L. HOM05D001967 ORTHO05D001929 4.0e-07 58.2 39 69.2
PSO541G0962 Papaver somniferum HOM05D001967 ORTHO05D001929 4.0e-07 58.2 39 74.4
Lalb_Chr16g0380141 Lupinus albus HOM05D001967 ORTHO05D001929 6.8e-07 57.4 40 72.5
CSS0036961 Camellia sinensis var. sinensis HOM05D001967 ORTHO05D001929 8.9e-07 57.0 31 90.3
Oeu026113.1 Olea europaea HOM05D001967 ORTHO05D001929 8.9e-07 57.0 41 75.6
SalBow7G3190 Salvia bowleyana HOM05D001967 ORTHO05D001929 8.9e-07 57.0 39 66.7
vmacro20617 Vaccinium macrocarpon HOM05D001967 ORTHO05D001929 8.9e-07 57.0 39 71.8
Haze_03633 Corylus avellana HOM05D001967 ORTHO05D001929 1.5e-06 56.2 67 52.2
Lsat_1_v5_gn_0_40520 Lactuca sativa HOM05D001967 ORTHO05D001929 1.5e-06 56.2 47 57.4
Nitab4.5_0000486g0190 Nicotiana tabacum HOM05D001967 ORTHO05D001929 2.0e-06 55.8 39 64.1
Cpa.g.sc26.158 Carica papaya HOM05D001967 ORTHO05D001929 2.6e-06 55.5 32 84.4
Peaxi162Scf01114g00011 Petunia axillaris HOM05D001967 ORTHO05D001929 2.6e-06 55.5 39 61.5
Nitab4.5_0010090g0020 Nicotiana tabacum HOM05D001967 ORTHO05D001929 3.4e-06 55.1 39 61.5
THA.LOC104801939 Tarenaya hassleriana HOM05D001967 ORTHO05D001929 4.4e-06 54.7 57 54.4
Oeu062564.1 Olea europaea HOM05D001967 ORTHO05D001929 5.7e-06 54.3 57 52.6


User provided reference genes

Program Settings