Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p045140 Quercus lobata HOM05D002538 ORTHO05D003162 4.1e-75 285.0 187 100.0
QL05p045510 Quercus lobata HOM05D002538 ORTHO05D003162 2.8e-68 262.3 182 96.7
CiPaw.10G053200 Carya illinoinensis HOM05D002538 ORTHO05D003162 2.1e-31 139.8 161 73.3
CiPaw.09G064200 Carya illinoinensis HOM05D002538 ORTHO05D003162 1.1e-27 127.5 161 75.8
CsaV3_6G050460 Cucumis sativus L. HOM05D002538 ORTHO05D003162 4.6e-26 122.1 161 49.7
Oeu012159.2 Olea europaea HOM05D002538 ORTHO05D003162 1.3e-25 120.6 160 70.0
Glyma.07G202100 Glycine max HOM05D002538 ORTHO05D003162 3.0e-25 119.4 161 53.4
Glyma.13G174200 Glycine max HOM05D002538 ORTHO05D003162 3.9e-25 119.0 161 53.4
CSS0021581 Camellia sinensis var. sinensis HOM05D002538 ORTHO05D003162 6.6e-25 118.2 160 50.6
TAR626G1005 Trochodendron aralioides HOM05D002538 ORTHO05D003162 8.6e-25 117.9 160 50.6
vmacro15938 Vaccinium macrocarpon HOM05D002538 ORTHO05D003162 8.6e-25 117.9 160 48.1
VMungo1395G0001 Vigna mungo HOM05D002538 ORTHO05D003162 1.5e-24 117.1 161 52.2
CDE09G0660 Ceratophyllum demersum HOM05D002538 ORTHO05D003162 3.3e-24 115.9 160 48.8
CANSAT35G0219 Cannabis sativa HOM05D002538 ORTHO05D003162 4.3e-24 115.5 108 66.7
Lalb_Chr16g0384091 Lupinus albus HOM05D002538 ORTHO05D003162 4.3e-24 115.5 161 52.8
Duzib160G0687 Durio zibethinus HOM05D002538 ORTHO05D003162 5.6e-24 115.2 160 65.0
FvH4_3g08471 Fragaria vesca HOM05D002538 ORTHO05D003162 5.6e-24 115.2 165 59.4
CDE02G1050 Ceratophyllum demersum HOM05D002538 ORTHO05D003162 9.5e-24 114.4 160 54.4
FAN21G0308 Fragaria x ananassa HOM05D002538 ORTHO05D003162 1.2e-23 114.0 165 59.4
Dinv40607 Davidia involucrata HOM05D002538 ORTHO05D003162 1.6e-23 113.6 108 66.7
FAN11G3059 Fragaria x ananassa HOM05D002538 ORTHO05D003162 1.6e-23 113.6 165 59.4
FAN25G0596 Fragaria x ananassa HOM05D002538 ORTHO05D003162 4.7e-23 112.1 165 61.8
EL10Ac8g20445 Beta vulgaris HOM05D002538 ORTHO05D003162 6.2e-23 111.7 160 46.9
Sp2g10920 Schrenkiella parvula HOM05D002538 ORTHO05D003162 6.2e-23 111.7 160 48.1
A09p22060 Brassica napus HOM05D002538 ORTHO05D003162 8.1e-23 111.3 160 48.1
BraA09t37812Z Brassica rapa HOM05D002538 ORTHO05D003162 8.1e-23 111.3 160 48.1
Ciclev10014139m.g Citrus clementina HOM05D002538 ORTHO05D003162 8.1e-23 111.3 160 47.5
BcaC06g31502 Brassica carinata HOM05D002538 ORTHO05D003162 1.1e-22 110.9 160 48.1
BcaB07g30857 Brassica carinata HOM05D002538 ORTHO05D003162 1.4e-22 110.5 160 54.4
AUR62031088 Chenopodium quinoa HOM05D002538 ORTHO05D003162 1.4e-22 110.5 108 63.0
Solyc02g077600.3 Solanum lycopersicum HOM05D002538 ORTHO05D003162 1.8e-22 110.2 165 47.3
THA.LOC104798407 Tarenaya hassleriana HOM05D002538 ORTHO05D003162 1.8e-22 110.2 108 64.8
MD10G1288200 Malus domestica HOM05D002538 ORTHO05D003162 2.3e-22 109.8 108 64.8
Nitab4.5_0007082g0020 Nicotiana tabacum HOM05D002538 ORTHO05D003162 2.3e-22 109.8 161 67.7
AUR62014880 Chenopodium quinoa HOM05D002538 ORTHO05D003162 3.1e-22 109.4 108 63.0
Lj1C1200G23 Lonicera japonica HOM05D002538 ORTHO05D003162 3.1e-22 109.4 108 64.8
Nn1g06401 Nelumbo nucifera HOM05D002538 ORTHO05D003162 3.1e-22 109.4 108 65.7
PSO832G0299 Papaver somniferum HOM05D002538 ORTHO05D003162 3.1e-22 109.4 160 66.2
vmacro03901 Vaccinium macrocarpon HOM05D002538 ORTHO05D003162 3.1e-22 109.4 108 64.8
BcaC04g21734 Brassica carinata HOM05D002538 ORTHO05D003162 5.2e-22 108.6 160 47.5
C09p28210 Brassica napus HOM05D002538 ORTHO05D003162 5.2e-22 108.6 160 47.5
MD05G1309600 Malus domestica HOM05D002538 ORTHO05D003162 5.2e-22 108.6 108 64.8
Sed0021408 Sechium edule HOM05D002538 ORTHO05D003162 6.8e-22 108.2 108 61.1
GSVIVG01021121001 Vitis vinifera HOM05D002538 ORTHO05D003162 6.8e-22 108.2 105 65.7
Manes.16G032600 Manihot esculenta HOM05D002538 ORTHO05D003162 8.9e-22 107.8 108 62.0
BolC9t55694H Brassica oleracea HOM05D002538 ORTHO05D003162 1.2e-21 107.5 160 47.5
CSS0006869 Camellia sinensis var. sinensis HOM05D002538 ORTHO05D003162 1.2e-21 107.5 109 64.2
arahy.Tifrunner.gnm1.ann1.T00U8Q Arachis hypogaea HOM05D002538 ORTHO05D003162 1.5e-21 107.1 109 61.5
Rhsim13G0180600 Rhododendron simsii HOM05D002538 ORTHO05D003162 1.5e-21 107.1 108 64.8
Dinv17362 Davidia involucrata HOM05D002538 ORTHO05D003162 2.0e-21 106.7 108 63.9
Aqoxy4G00604 Aquilegia oxysepala HOM05D002538 ORTHO05D003162 3.4e-21 105.9 160 63.1
A06p46220 Brassica napus HOM05D002538 ORTHO05D003162 3.4e-21 105.9 160 46.9
C07p29240 Brassica napus HOM05D002538 ORTHO05D003162 3.4e-21 105.9 160 46.9
BolC7t43466H Brassica oleracea HOM05D002538 ORTHO05D003162 3.4e-21 105.9 160 46.9
BraA06t27486Z Brassica rapa HOM05D002538 ORTHO05D003162 3.4e-21 105.9 160 46.9
arahy.Tifrunner.gnm1.ann1.BNQL10 Arachis hypogaea HOM05D002538 ORTHO05D003162 4.4e-21 105.5 109 60.6
QL05p042992 Quercus lobata HOM05D002538 ORTHO05D003162 4.4e-21 105.5 107 67.3
Migut.M01100 Erythranthe guttata HOM05D002538 ORTHO05D003162 7.5e-21 104.8 160 46.2
Hund23821 Selenicereus undatus HOM05D002538 ORTHO05D003162 7.5e-21 104.8 160 56.2
Nitab4.5_0003315g0010 Nicotiana tabacum HOM05D002538 ORTHO05D003162 9.8e-21 104.4 108 62.0
Peaxi162Scf00490g00311 Petunia axillaris HOM05D002538 ORTHO05D003162 9.8e-21 104.4 160 48.8
Rhsim02G0135500 Rhododendron simsii HOM05D002538 ORTHO05D003162 9.8e-21 104.4 108 60.2
Ca_18600_v3 Cicer arietinum L. HOM05D002538 ORTHO05D003162 1.7e-20 103.6 109 58.7
Eucgr.C03068 Eucalyptus grandis HOM05D002538 ORTHO05D003162 2.9e-20 102.8 157 58.0
Sc17g0005890 Simmondsia chinensis HOM05D002538 ORTHO05D003162 2.9e-20 102.8 108 60.2
EL10Ac7g17568 Beta vulgaris HOM05D002538 ORTHO05D003162 3.7e-20 102.4 108 60.2
TAR624G0072 Trochodendron aralioides HOM05D002538 ORTHO05D003162 4.9e-20 102.1 108 60.2
TAR627G0078 Trochodendron aralioides HOM05D002538 ORTHO05D003162 4.9e-20 102.1 133 49.6
CAN.G529.62 Capsicum annuum HOM05D002538 ORTHO05D003162 6.4e-20 101.7 112 59.8
Lalb_Chr09g0327861 Lupinus albus HOM05D002538 ORTHO05D003162 6.4e-20 101.7 109 58.7
Lalb_Chr15g0089671 Lupinus albus HOM05D002538 ORTHO05D003162 6.4e-20 101.7 109 57.8
Thhalv10000755m.g Eutrema salsugineum HOM05D002538 ORTHO05D003162 8.3e-20 101.3 157 43.3
PSO210G7643 Papaver somniferum HOM05D002538 ORTHO05D003162 8.3e-20 101.3 160 60.0
CAN.G813.6 Capsicum annuum HOM05D002538 ORTHO05D003162 1.1e-19 100.9 105 63.8
Nitab4.5_0006826g0020 Nicotiana tabacum HOM05D002538 ORTHO05D003162 1.1e-19 100.9 108 60.2
TAR627G0221 Trochodendron aralioides HOM05D002538 ORTHO05D003162 1.1e-19 100.9 133 49.6
Eucgr.D00590 Eucalyptus grandis HOM05D002538 ORTHO05D003162 1.4e-19 100.5 105 59.0
Peaxi162Scf00099g00079 Petunia axillaris HOM05D002538 ORTHO05D003162 1.4e-19 100.5 108 61.1
RcHm_v2.0_Chr5g0009341 Rosa chinensis HOM05D002538 ORTHO05D003162 1.9e-19 100.1 105 61.9
Cc02_g14020 Coffea canephora HOM05D002538 ORTHO05D003162 3.2e-19 99.4 108 61.1
Nn1g04247 Nelumbo nucifera HOM05D002538 ORTHO05D003162 3.2e-19 99.4 108 61.1
Sabra11G0040600 Salix brachista HOM05D002538 ORTHO05D003162 4.1e-19 99.0 104 63.5
Phvul.003G290500 Phaseolus vulgaris HOM05D002538 ORTHO05D003162 7.1e-19 98.2 104 59.6
PGR004G1187 Punica granatum HOM05D002538 ORTHO05D003162 7.1e-19 98.2 103 62.1
Atru.chr10.1781 Acer truncatum HOM05D002538 ORTHO05D003162 9.2e-19 97.8 118 55.9
Sopen02g022500 Solanum pennellii HOM05D002538 ORTHO05D003162 9.2e-19 97.8 112 58.0
Atru.chr10.1782 Acer truncatum HOM05D002538 ORTHO05D003162 4.6e-18 95.5 108 58.3
ECA236G0316 Erigeron canadensis HOM05D002538 ORTHO05D003162 4.6e-18 95.5 108 57.4
Oeu050786.1 Olea europaea HOM05D002538 ORTHO05D003162 6.0e-18 95.1 108 58.3
CARHR175860 Cardamine hirsuta HOM05D002538 ORTHO05D003162 2.3e-17 93.2 105 56.2
Aa31LG9G6820 Aethionema arabicum HOM05D002538 ORTHO05D003162 3.0e-17 92.8 103 60.2
ClCG00G002770 Citrullus lanatus HOM05D002538 ORTHO05D003162 3.0e-17 92.8 86 62.8
ClCG01G023320 Citrullus lanatus HOM05D002538 ORTHO05D003162 3.0e-17 92.8 86 62.8
Lj2C293T13 Lonicera japonica HOM05D002538 ORTHO05D003162 3.0e-17 92.8 108 56.5
Lj4g0011488 Lotus japonicus HOM05D002538 ORTHO05D003162 3.0e-17 92.8 109 54.1
SGA_v2.0_scaffold309G48172 Striga asiatica HOM05D002538 ORTHO05D003162 5.1e-17 92.0 108 54.6
Hund18210 Selenicereus undatus HOM05D002538 ORTHO05D003162 8.6e-17 91.3 138 42.0
unitig_27.g24978 Utricularia gibba HOM05D002538 ORTHO05D003162 8.6e-17 91.3 104 55.8
Carub.0008s0186 Capsella rubella HOM05D002538 ORTHO05D003162 4.3e-16 89.0 97 58.8
Psat7g116720 Pisum sativum HOM05D002538 ORTHO05D003162 5.6e-16 88.6 106 53.8
Sabra04G0031100 Salix brachista HOM05D002538 ORTHO05D003162 7.3e-16 88.2 160 53.8
Glyma.13G234600 Glycine max HOM05D002538 ORTHO05D003162 9.5e-16 87.8 101 57.4
Os05g0563050 Oryza sativa ssp. japonica HOM05D002538 ORTHO05D003162 9.5e-16 87.8 109 54.1
Sed0000642 Sechium edule HOM05D002538 ORTHO05D003162 1.2e-15 87.4 86 60.5
Gohir.D10G028700 Gossypium hirsutum HOM05D002538 ORTHO05D003162 1.6e-15 87.0 160 63.8
Zm00001eb343670 Zea mays HOM05D002538 ORTHO05D003162 2.1e-15 86.7 108 53.7
Ah.15g093000 Amaranthus hybridus HOM05D002538 ORTHO05D003162 1.1e-14 84.3 108 52.8
Lsat_1_v5_gn_7_30920 Lactuca sativa HOM05D002538 ORTHO05D003162 1.1e-14 84.3 108 50.9
Hma1.2p1_0206F.1_g087630 Hydrangea macrophylla HOM05D002538 ORTHO05D003162 1.4e-14 84.0 105 53.3
VMungo0540G0056 Vigna mungo HOM05D002538 ORTHO05D003162 1.8e-14 83.6 158 56.3
Zm00001eb295820 Zea mays HOM05D002538 ORTHO05D003162 1.8e-14 83.6 108 53.7
Os02g0307000 Oryza sativa ssp. japonica HOM05D002538 ORTHO05D003162 2.3e-14 83.2 158 39.2
PSO675G8802 Papaver somniferum HOM05D002538 ORTHO05D003162 1.2e-13 80.9 108 50.0
Gohir.A10G028300 Gossypium hirsutum HOM05D002538 ORTHO05D003162 1.5e-13 80.5 84 65.5
PSO541G2371 Papaver somniferum HOM05D002538 ORTHO05D003162 1.5e-13 80.5 108 50.0
ECA234G1452 Erigeron canadensis HOM05D002538 ORTHO05D003162 2.6e-13 79.7 105 50.5
PGSC0003DMG400022833 Solanum tuberosum HOM05D002538 ORTHO05D003162 3.4e-13 79.3 84 64.3
Solyc10g008950.3 Solanum lycopersicum HOM05D002538 ORTHO05D003162 4.4e-13 79.0 109 53.2
Sopen10g004740 Solanum pennellii HOM05D002538 ORTHO05D003162 4.4e-13 79.0 109 53.2
Potri.004G049400 Populus trichocarpa HOM05D002538 ORTHO05D003162 2.9e-12 76.3 82 62.2
Potri.011G058500 Populus trichocarpa HOM05D002538 ORTHO05D003162 1.1e-11 74.3 82 61.0
unitig_699.g19113 Utricularia gibba HOM05D002538 ORTHO05D003162 1.1e-11 74.3 106 43.4
Nitab4.5_0001955g0010 Nicotiana tabacum HOM05D002538 ORTHO05D003162 3.2e-11 72.8 84 60.7
MBI06_g04404_MAGBIO Magnolia biondii HOM05D002538 ORTHO05D003162 9.2e-11 71.2 109 42.2
MSTRG.7364 Avicennia marina HOM05D002538 ORTHO05D003162 1.2e-10 70.9 108 46.3
Haze_06366 Corylus avellana HOM05D002538 ORTHO05D003162 6.0e-10 68.6 161 59.0
Gorai.011G030500 Gossypium raimondii HOM05D002538 ORTHO05D003162 7.8e-10 68.2 75 65.3
TWI38G0418 Tripterygium wilfordii HOM05D002538 ORTHO05D003162 3.0e-09 66.2 57 61.4
Nitab4.5_0002114g0140 Nicotiana tabacum HOM05D002538 ORTHO05D003162 6.6e-09 65.1 99 50.5
Prupe.4G053400 Prunus persica HOM05D002538 ORTHO05D003162 6.6e-09 65.1 108 47.2
MELO3C007254.2 Cucumis melo HOM05D002538 ORTHO05D003162 8.6e-09 64.7 68 63.2
Manes.17G050000 Manihot esculenta HOM05D002538 ORTHO05D003162 1.2e-07 60.8 108 44.4
Cpa.g.sc83.100 Carica papaya HOM05D002538 ORTHO05D003162 6.2e-07 58.5 173 28.3
Sabra03G0113700 Salix brachista HOM05D002538 ORTHO05D003162 8.1e-07 58.2 98 53.1
Potri.017G016800 Populus trichocarpa HOM05D002538 ORTHO05D003162 1.4e-06 57.4 108 38.0
Sabra17G0013000 Salix brachista HOM05D002538 ORTHO05D003162 2.4e-06 56.6 121 35.5
ATR0602G206 Amborella trichopoda HOM05D002538 ORTHO05D003162 8.9e-06 54.7 75 52.0


User provided reference genes

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