Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p043485 Quercus lobata HOM05D006452 ORTHO05D008068 0.0e+00 1198.7 611 100.0
Cfa000544 Carpinus fangiana HOM05D006452 ORTHO05D008068 9.3e-262 906.7 618 76.2
CiPaw.09G065500 Carya illinoinensis HOM05D006452 ORTHO05D008068 4.2e-254 881.3 601 75.4
Ciclev10014636m.g Citrus clementina HOM05D006452 ORTHO05D008068 2.1e-221 772.7 601 65.9
MD05G1308100 Malus domestica HOM05D006452 ORTHO05D008068 1.3e-218 763.5 599 65.6
RcHm_v2.0_Chr5g0009531 Rosa chinensis HOM05D006452 ORTHO05D008068 4.8e-218 761.5 599 65.8
Sabra04G0032100 Salix brachista HOM05D006452 ORTHO05D008068 5.5e-214 748.0 615 61.8
Manes.17G051000 Manihot esculenta HOM05D006452 ORTHO05D008068 4.7e-213 745.0 602 62.6
Thecc.06G178700 Theobroma cacao HOM05D006452 ORTHO05D008068 4.0e-212 741.9 602 62.6
Prupe.4G054700 Prunus persica HOM05D006452 ORTHO05D008068 5.7e-211 738.0 596 65.9
FvH4_3g08370 Fragaria vesca HOM05D006452 ORTHO05D008068 9.8e-211 737.3 612 63.4
Haze_06337 Corylus avellana HOM05D006452 ORTHO05D008068 2.8e-210 735.7 664 62.0
TAR629G0815 Trochodendron aralioides HOM05D006452 ORTHO05D008068 1.1e-209 733.8 630 61.7
Gorai.010G157000 Gossypium raimondii HOM05D006452 ORTHO05D008068 2.4e-209 732.6 602 61.3
GSVIVG01021140001 Vitis vinifera HOM05D006452 ORTHO05D008068 1.0e-207 727.2 625 61.3
CSS0041533 Camellia sinensis var. sinensis HOM05D006452 ORTHO05D008068 2.3e-207 726.1 600 63.7
Gohir.A06G134400 Gossypium hirsutum HOM05D006452 ORTHO05D008068 1.1e-206 723.8 602 60.3
Gohir.D06G135100 Gossypium hirsutum HOM05D006452 ORTHO05D008068 5.6e-206 721.5 603 60.9
TWI38G0383 Tripterygium wilfordii HOM05D006452 ORTHO05D008068 9.5e-206 720.7 590 62.7
Duzib235G0445 Durio zibethinus HOM05D006452 ORTHO05D008068 4.7e-205 718.4 595 61.2
CANSAT35G2027 Cannabis sativa HOM05D006452 ORTHO05D008068 1.0e-204 717.2 616 61.5
Hma1.2p1_1465F.1_g285350 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 5.2e-204 714.9 556 66.2
Actinidia39488 Actinidia chinensis HOM05D006452 ORTHO05D008068 1.4e-201 706.8 621 60.1
Medtr2g014890 Medicago truncatula HOM05D006452 ORTHO05D008068 7.8e-200 701.0 600 61.0
Ca_00397_v3 Cicer arietinum L. HOM05D006452 ORTHO05D008068 1.0e-199 700.7 614 60.3
Glyma.10G069100 Glycine max HOM05D006452 ORTHO05D008068 1.7e-199 699.9 580 62.2
Lj6g0021964 Lotus japonicus HOM05D006452 ORTHO05D008068 8.6e-199 697.6 611 60.1
Nn1g06365 Nelumbo nucifera HOM05D006452 ORTHO05D008068 1.3e-194 683.7 601 59.9
Glyma.13G152304 Glycine max HOM05D006452 ORTHO05D008068 4.9e-194 681.8 608 59.5
Phvul.006G180500 Phaseolus vulgaris HOM05D006452 ORTHO05D008068 4.6e-192 675.2 595 60.8
COL.COLO4_31396 Corchorus olitorius HOM05D006452 ORTHO05D008068 6.0e-192 674.9 577 60.1
FAN25G3335 Fragaria x ananassa HOM05D006452 ORTHO05D008068 5.0e-191 671.8 584 60.4
Lj1A1199G43 Lonicera japonica HOM05D006452 ORTHO05D008068 1.9e-190 669.8 613 59.5
Lalb_Chr18g0059351 Lupinus albus HOM05D006452 ORTHO05D008068 1.9e-190 669.8 608 58.4
VMungo0540G0818 Vigna mungo HOM05D006452 ORTHO05D008068 1.2e-187 660.6 609 58.3
FAN21G3590 Fragaria x ananassa HOM05D006452 ORTHO05D008068 5.8e-187 658.3 588 60.0
ClCG01G023380 Citrullus lanatus HOM05D006452 ORTHO05D008068 1.3e-186 657.1 643 55.8
MELO3C007247.2 Cucumis melo HOM05D006452 ORTHO05D008068 1.3e-186 657.1 604 58.4
BcaC01g00067 Brassica carinata HOM05D006452 ORTHO05D008068 1.4e-185 653.7 583 57.5
Aqoxy4G00567 Aquilegia oxysepala HOM05D006452 ORTHO05D008068 3.5e-184 649.0 630 55.6
THA.LOC104812622 Tarenaya hassleriana HOM05D006452 ORTHO05D008068 1.3e-183 647.1 598 57.7
AT1G28530 Arabidopsis thaliana HOM05D006452 ORTHO05D008068 3.0e-183 646.0 593 57.2
AL1G42150 Arabidopsis lyrata HOM05D006452 ORTHO05D008068 3.9e-183 645.6 592 57.1
Atru.chr10.1767 Acer truncatum HOM05D006452 ORTHO05D008068 6.6e-183 644.8 523 62.1
Oeu001094.1 Olea europaea HOM05D006452 ORTHO05D008068 8.6e-183 644.4 593 56.8
arahy.Tifrunner.gnm1.ann1.FLUH97 Arachis hypogaea HOM05D006452 ORTHO05D008068 1.9e-182 643.3 611 56.3
BraA08t34497Z Brassica rapa HOM05D006452 ORTHO05D008068 2.5e-182 642.9 586 56.7
BolC3t19793H Brassica oleracea HOM05D006452 ORTHO05D008068 3.3e-182 642.5 584 56.7
Sp1g24780 Schrenkiella parvula HOM05D006452 ORTHO05D008068 3.3e-182 642.5 560 57.9
CARHR028010 Cardamine hirsuta HOM05D006452 ORTHO05D008068 4.3e-182 642.1 592 56.2
Rhsim02G0137400 Rhododendron simsii HOM05D006452 ORTHO05D008068 5.6e-182 641.7 643 54.1
A08p25460 Brassica napus HOM05D006452 ORTHO05D008068 7.3e-182 641.3 584 57.0
C03p75340 Brassica napus HOM05D006452 ORTHO05D008068 7.3e-182 641.3 584 56.7
Carub.0001s2699 Capsella rubella HOM05D006452 ORTHO05D008068 9.5e-182 641.0 591 56.2
FAN11G3013 Fragaria x ananassa HOM05D006452 ORTHO05D008068 1.6e-181 640.2 610 58.2
BcaB03g12098 Brassica carinata HOM05D006452 ORTHO05D008068 2.1e-181 639.8 574 57.0
Nitab4.5_0001375g0100 Nicotiana tabacum HOM05D006452 ORTHO05D008068 8.9e-180 634.4 623 55.1
arahy.Tifrunner.gnm1.ann1.228Z0R Arachis hypogaea HOM05D006452 ORTHO05D008068 2.0e-179 633.3 611 55.6
Dinv40619 Davidia involucrata HOM05D006452 ORTHO05D008068 1.3e-178 630.6 451 69.6
ECA234G2428 Erigeron canadensis HOM05D006452 ORTHO05D008068 1.3e-178 630.6 595 54.6
Thhalv10007091m.g Eutrema salsugineum HOM05D006452 ORTHO05D008068 3.8e-178 629.0 596 55.7
Lsat_1_v5_gn_4_51620 Lactuca sativa HOM05D006452 ORTHO05D008068 4.9e-178 628.6 593 54.6
Nitab4.5_0000516g0020 Nicotiana tabacum HOM05D006452 ORTHO05D008068 1.4e-177 627.1 607 54.9
Cc00_g07720 Coffea canephora HOM05D006452 ORTHO05D008068 8.1e-173 611.3 602 54.2
PGSC0003DMG400012819 Solanum tuberosum HOM05D006452 ORTHO05D008068 8.1e-173 611.3 594 54.4
HanXRQChr16g0518591 Helianthus annuus HOM05D006452 ORTHO05D008068 5.8e-171 605.1 600 51.5
Sopen03g002290 Solanum pennellii HOM05D006452 ORTHO05D008068 5.8e-171 605.1 584 54.5
Migut.M01092 Erythranthe guttata HOM05D006452 ORTHO05D008068 3.0e-167 592.8 602 52.5
Aa31LG6G11040 Aethionema arabicum HOM05D006452 ORTHO05D008068 6.6e-167 591.7 700 47.9
AUR62031101 Chenopodium quinoa HOM05D006452 ORTHO05D008068 1.1e-166 590.9 565 55.2
AUR62014896 Chenopodium quinoa HOM05D006452 ORTHO05D008068 2.5e-166 589.7 565 54.9
EL10Ac8g20457 Beta vulgaris HOM05D006452 ORTHO05D008068 3.4e-163 579.3 637 51.3
PSO832G2664 Papaver somniferum HOM05D006452 ORTHO05D008068 3.5e-160 569.3 662 46.8
PSO210G4080 Papaver somniferum HOM05D006452 ORTHO05D008068 6.2e-157 558.5 660 46.4
SalBow8G3895 Salvia bowleyana HOM05D006452 ORTHO05D008068 2.1e-152 543.5 619 48.8
Potri.004G051000 Populus trichocarpa HOM05D006452 ORTHO05D008068 1.8e-151 540.4 420 62.4
Sed0012413 Sechium edule HOM05D006452 ORTHO05D008068 1.6e-149 533.9 460 59.6
FAN16G3312 Fragaria x ananassa HOM05D006452 ORTHO05D008068 8.2e-149 531.6 420 62.6
TPR.G11703 Trifolium pratense HOM05D006452 ORTHO05D008068 1.8e-148 530.4 445 62.7
MBI07_g32549_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 5.3e-148 528.9 603 47.8
SGA_v2.0_scaffold16G07655 Striga asiatica HOM05D006452 ORTHO05D008068 1.4e-145 520.8 619 46.7
ATR0602G160 Amborella trichopoda HOM05D006452 ORTHO05D008068 1.2e-144 517.7 580 48.1
Hma1.2p1_1465F.1_g285340 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 1.8e-140 503.8 419 63.5
Solyc03g006280.4 Solanum lycopersicum HOM05D006452 ORTHO05D008068 1.8e-140 503.8 583 48.9
Cpa.g.sc7.8 Carica papaya HOM05D006452 ORTHO05D008068 1.3e-138 497.7 442 58.8
DCAR_006579 Daucus carota HOM05D006452 ORTHO05D008068 4.2e-137 492.7 586 48.0
PGR004G2109 Punica granatum HOM05D006452 ORTHO05D008068 6.3e-133 478.8 451 56.5
Sc17g0005860 Simmondsia chinensis HOM05D006452 ORTHO05D008068 7.9e-128 461.8 621 46.4
Psat1g201640 Pisum sativum HOM05D006452 ORTHO05D008068 2.6e-126 456.8 366 63.4
unitig_8.g4630 Utricularia gibba HOM05D006452 ORTHO05D008068 3.7e-125 453.0 572 43.5
CsaV3_6G050510 Cucumis sativus L. HOM05D006452 ORTHO05D008068 8.2e-125 451.8 418 55.7
Eucgr.D00580 Eucalyptus grandis HOM05D006452 ORTHO05D008068 4.5e-123 446.0 401 58.9
CDE10G0189 Ceratophyllum demersum HOM05D006452 ORTHO05D008068 9.4e-121 438.3 513 46.2
Peaxi162Scf01018g00215 Petunia axillaris HOM05D006452 ORTHO05D008068 6.7e-119 432.2 586 43.5
HPP92_000497 Vanilla planifolia HOM05D006452 ORTHO05D008068 3.7e-117 426.4 576 43.8
vmacro15945 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 1.4e-116 424.5 388 57.2
CAN.G189.65 Capsicum annuum HOM05D006452 ORTHO05D008068 2.4e-116 423.7 488 49.6
Hund23835 Selenicereus undatus HOM05D006452 ORTHO05D008068 2.8e-109 400.2 515 47.8
MBI07_g06446_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 5.4e-100 369.4 641 37.8
Os02g0109900 Oryza sativa ssp. japonica HOM05D006452 ORTHO05D008068 8.6e-98 362.1 581 37.9
Zm00001eb229620 Zea mays HOM05D006452 ORTHO05D008068 7.3e-89 332.4 576 35.9
CAN.G1286.36 Capsicum annuum HOM05D006452 ORTHO05D008068 6.2e-72 276.2 291 49.5
Mapoly0052s0014 Marchantia polymorpha HOM05D006452 ORTHO05D008068 3.0e-66 257.3 591 29.3
TPR.G10795 Trifolium pratense HOM05D006452 ORTHO05D008068 7.1e-60 236.1 209 58.9
CAN.G801.36 Capsicum annuum HOM05D006452 ORTHO05D008068 7.8e-59 232.6 233 51.1
Psat1g201600 Pisum sativum HOM05D006452 ORTHO05D008068 1.4e-55 221.9 199 56.8
AagrBONN_evm.TU.Sc2ySwM_228.5590 Anthoceros agrestis HOM05D006452 ORTHO05D008068 2.0e-46 191.4 638 27.4
vmacro15946 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 2.6e-46 191.0 274 43.4
Lsat_1_v5_gn_9_9480 Lactuca sativa HOM05D006452 ORTHO05D008068 4.3e-41 173.7 219 42.0
SEGI_16257 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 3.1e-31 141.0 302 33.4
SEGI_13408 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 5.8e-30 136.7 206 36.4
unitig_8.g4641 Utricularia gibba HOM05D006452 ORTHO05D008068 5.8e-30 136.7 155 45.8
CAN.G638.7 Capsicum annuum HOM05D006452 ORTHO05D008068 1.4e-18 99.0 166 40.4
Pp3c17_22050 Physcomitrium patens HOM05D006452 ORTHO05D008068 6.7e-18 96.7 361 27.7
GSVIVG01026713001 Vitis vinifera HOM05D006452 ORTHO05D008068 8.8e-18 96.3 83 65.1
BcaC01g06820 Brassica carinata HOM05D006452 ORTHO05D008068 9.7e-17 92.8 88 56.8
CDE10G0511 Ceratophyllum demersum HOM05D002520 ORTHO05D003144 2.8e-16 91.3 87 59.8
MBI05_g40582_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D029689 3.4e-14 84.3 102 48.0
MBI05_g44052_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 1.0e-13 82.8 79 55.7
Peaxi162Scf01018g00213 Petunia axillaris HOM05D006452 ORTHO05D008068 2.9e-13 81.3 67 58.2
MBI15_g20021_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 4.7e-11 73.9 261 28.4
MBI05_g22668_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 1.4e-10 72.4 59 61.0
FvH4_3g08350 Fragaria vesca HOM05D003433 ORTHO05D003921 5.1e-10 70.5 46 69.6


User provided reference genes

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