Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p042078 Quercus lobata HOM05D007507 ORTHO05D009420 7.5e-77 290.4 145 100.0
CiPaw.10G052300 Carya illinoinensis HOM05D007507 ORTHO05D009420 2.5e-40 169.1 136 67.6
MD10G1289800 Malus domestica HOM05D007507 ORTHO05D009420 9.6e-40 167.2 134 65.7
MD05G1310700 Malus domestica HOM05D007507 ORTHO05D009420 2.4e-38 162.5 129 67.4
Prupe.4G051900 Prunus persica HOM05D007507 ORTHO05D009420 3.1e-38 162.2 129 66.7
GSVIVG01021107001 Vitis vinifera HOM05D007507 ORTHO05D009420 3.1e-38 162.2 133 63.2
Lalb_Chr20g0121601 Lupinus albus HOM05D007507 ORTHO05D009420 4.0e-38 161.8 131 61.1
Glyma.07G201000 Glycine max HOM05D007507 ORTHO05D009420 6.9e-38 161.0 133 60.9
Thecc.06G181600 Theobroma cacao HOM05D007507 ORTHO05D009420 2.0e-37 159.5 132 62.9
Glyma.13G175400 Glycine max HOM05D007507 ORTHO05D009420 4.9e-36 154.8 133 59.4
Duzib235G0685 Durio zibethinus HOM05D007507 ORTHO05D009420 1.1e-35 153.7 136 56.6
Glyma.15G077500 Glycine max HOM05D007507 ORTHO05D009420 1.1e-35 153.7 131 61.1
RcHm_v2.0_Chr5g0009091 Rosa chinensis HOM05D007507 ORTHO05D009420 1.1e-35 153.7 137 61.3
Dinv17350 Davidia involucrata HOM05D007507 ORTHO05D009420 7.1e-35 151.0 136 58.8
VMungo0251G0526 Vigna mungo HOM05D007507 ORTHO05D009420 9.3e-35 150.6 135 60.0
TAR626G1744 Trochodendron aralioides HOM05D007507 ORTHO05D009420 3.5e-34 148.7 131 59.5
Glyma.13G236200 Glycine max HOM05D007507 ORTHO05D009420 4.6e-34 148.3 132 59.8
Phvul.002G232000 Phaseolus vulgaris HOM05D007507 ORTHO05D009420 6.0e-34 147.9 126 60.3
FAN21G1585 Fragaria x ananassa HOM05D007507 ORTHO05D009420 1.8e-33 146.4 137 59.9
Duzib192G0611 Durio zibethinus HOM05D007507 ORTHO05D009420 2.3e-33 146.0 139 56.1
Phvul.006G182800 Phaseolus vulgaris HOM05D007507 ORTHO05D009420 3.9e-33 145.2 133 59.4
FvH4_3g08680 Fragaria vesca HOM05D007507 ORTHO05D009420 5.1e-33 144.8 137 58.4
Potri.004G048201 Populus trichocarpa HOM05D007507 ORTHO05D009420 6.7e-33 144.4 139 58.3
Potri.011G057400 Populus trichocarpa HOM05D007507 ORTHO05D009420 1.9e-32 142.9 133 60.2
Gorai.009G167100 Gossypium raimondii HOM05D007507 ORTHO05D009420 2.5e-32 142.5 142 53.5
Gohir.A05G159400 Gossypium hirsutum HOM05D007507 ORTHO05D009420 4.3e-32 141.7 139 55.4
Sabra04G0030100 Salix brachista HOM05D007507 ORTHO05D009420 4.3e-32 141.7 139 56.1
Dinv40597 Davidia involucrata HOM05D007507 ORTHO05D009420 5.6e-32 141.4 141 56.0
FAN11G0818 Fragaria x ananassa HOM05D007507 ORTHO05D009420 5.6e-32 141.4 138 58.7
CSS0001598 Camellia sinensis var. sinensis HOM05D007507 ORTHO05D009420 1.3e-31 140.2 132 53.8
Medtr2g014380 Medicago truncatula HOM05D007507 ORTHO05D009420 1.3e-31 140.2 129 55.0
TPR.G39426 Trifolium pratense HOM05D007507 ORTHO05D009420 1.6e-31 139.8 130 54.6
Cpa.g.sc27.9 Carica papaya HOM05D007507 ORTHO05D009420 4.8e-31 138.3 131 56.5
CANSAT35G2017 Cannabis sativa HOM05D007507 ORTHO05D009420 6.2e-31 137.9 134 59.0
Gohir.D05G162100 Gossypium hirsutum HOM05D007507 ORTHO05D009420 6.2e-31 137.9 139 54.0
Sabra11G0039300 Salix brachista HOM05D007507 ORTHO05D009420 1.1e-30 137.1 138 55.8
arahy.Tifrunner.gnm1.ann1.XNU6AG Arachis hypogaea HOM05D007507 ORTHO05D009420 1.8e-30 136.3 132 56.1
arahy.Tifrunner.gnm1.ann1.IERL18 Arachis hypogaea HOM05D007507 ORTHO05D009420 2.4e-30 136.0 138 55.8
arahy.Tifrunner.gnm1.ann1.UCBT0G Arachis hypogaea HOM05D007507 ORTHO05D009420 2.4e-30 136.0 138 55.1
Lj4g0010126 Lotus japonicus HOM05D007507 ORTHO05D009420 2.4e-30 136.0 134 53.7
Actinidia16570 Actinidia chinensis HOM05D007507 ORTHO05D009420 9.0e-30 134.0 140 51.4
Gohir.A09G073500 Gossypium hirsutum HOM05D007507 ORTHO05D009420 9.0e-30 134.0 135 55.6
arahy.Tifrunner.gnm1.ann1.26E61A Arachis hypogaea HOM05D007507 ORTHO05D009420 1.2e-29 133.7 130 54.6
TPR.G19926 Trifolium pratense HOM05D007507 ORTHO05D009420 3.4e-29 132.1 134 56.7
TWI38G1903 Tripterygium wilfordii HOM05D007507 ORTHO05D009420 3.4e-29 132.1 128 54.7
Psat7g115600 Pisum sativum HOM05D007507 ORTHO05D009420 4.5e-29 131.7 135 56.3
Gohir.D09G073200 Gossypium hirsutum HOM05D007507 ORTHO05D009420 5.8e-29 131.3 135 54.8
Gorai.006G088200 Gossypium raimondii HOM05D007507 ORTHO05D009420 5.8e-29 131.3 135 54.8
Medtr4g088390 Medicago truncatula HOM05D007507 ORTHO05D009420 5.8e-29 131.3 136 55.9
Actinidia05654 Actinidia chinensis HOM05D007507 ORTHO05D009420 1.3e-28 130.2 139 49.6
Manes.16G031300 Manihot esculenta HOM05D007507 ORTHO05D009420 3.8e-28 128.6 131 55.0
VMungo0540G0304 Vigna mungo HOM05D007507 ORTHO05D009420 6.4e-28 127.9 129 54.3
Ciclev10016932m.g Citrus clementina HOM05D007507 ORTHO05D009420 8.4e-28 127.5 142 51.4
HanXRQChr04g0113131 Helianthus annuus HOM05D007507 ORTHO05D009420 1.4e-27 126.7 138 51.4
Eucgr.E03247 Eucalyptus grandis HOM05D007507 ORTHO05D009420 7.1e-27 124.4 134 51.5
Hma1.2p1_0558F.1_g178550 Hydrangea macrophylla HOM05D007507 ORTHO05D009420 9.3e-27 124.0 121 55.4
Lsat_1_v5_gn_7_22681 Lactuca sativa HOM05D007507 ORTHO05D009420 9.3e-27 124.0 136 50.0
Nn1g04226 Nelumbo nucifera HOM05D007507 ORTHO05D009420 9.3e-27 124.0 124 56.5
PGSC0003DMG400031763 Solanum tuberosum HOM05D007507 ORTHO05D009420 1.6e-26 123.2 132 53.0
Manes.17G048900 Manihot esculenta HOM05D007507 ORTHO05D009420 2.7e-26 122.5 127 55.9
Cc02_g13780 Coffea canephora HOM05D007507 ORTHO05D009420 4.6e-26 121.7 135 51.1
Sopen02g022610 Solanum pennellii HOM05D007507 ORTHO05D009420 2.3e-25 119.4 137 50.4
Solyc02g077720.4 Solanum lycopersicum HOM05D007507 ORTHO05D009420 1.1e-24 117.1 137 50.4
Atru.chr10.1803 Acer truncatum HOM05D007507 ORTHO05D009420 2.8e-23 112.5 146 49.3
PGR042G2392 Punica granatum HOM05D007507 ORTHO05D009420 6.2e-23 111.3 140 48.6
Haze_06387 Corylus avellana HOM05D007507 ORTHO05D009420 8.2e-23 110.9 135 49.6
MBI07_g29118_MAGBIO Magnolia biondii HOM05D007507 ORTHO05D009420 1.1e-22 110.5 131 50.4
Gorai.010G158100 Gossypium raimondii HOM05D007507 ORTHO05D009420 1.8e-22 109.8 136 46.3
Gohir.D06G135900 Gossypium hirsutum HOM05D007507 ORTHO05D009420 2.4e-22 109.4 136 47.1
Nitab4.5_0002813g0060 Nicotiana tabacum HOM05D007507 ORTHO05D009420 2.0e-21 106.3 128 50.8
ClCG01G023220 Citrullus lanatus HOM05D007507 ORTHO05D009420 3.4e-21 105.5 136 46.3
CsaV3_6G050370 Cucumis sativus L. HOM05D007507 ORTHO05D009420 7.6e-21 104.4 141 46.1
Aqoxy4G00641 Aquilegia oxysepala HOM05D007507 ORTHO05D009420 1.0e-20 104.0 124 50.0
Atru.chr10.1804 Acer truncatum HOM05D007507 ORTHO05D009420 1.3e-20 103.6 138 49.3
DCAR_004049 Daucus carota HOM05D007507 ORTHO05D009420 2.9e-20 102.4 128 49.2
Nitab4.5_0007893g0030 Nicotiana tabacum HOM05D007507 ORTHO05D009420 4.9e-20 101.7 128 48.4
MSTRG.14710 Avicennia marina HOM05D007507 ORTHO05D009420 1.4e-19 100.1 128 46.1
PSO675G6999 Papaver somniferum HOM05D007507 ORTHO05D009420 2.5e-19 99.4 128 46.1
Oeu015676.1 Olea europaea HOM05D007507 ORTHO05D009420 6.0e-18 94.7 121 46.3
ECA236G3296 Erigeron canadensis HOM05D007507 ORTHO05D009420 1.3e-17 93.6 74 67.6
Sed0011593 Sechium edule HOM05D007507 ORTHO05D009420 2.3e-17 92.8 122 48.4
Migut.H01473 Erythranthe guttata HOM05D007507 ORTHO05D009420 6.7e-17 91.3 138 43.5
Oeu027697.1 Olea europaea HOM05D007507 ORTHO05D009420 3.3e-16 89.0 96 52.1
MELO3C007264.2 Cucumis melo HOM05D007507 ORTHO05D009420 2.8e-15 85.9 129 43.4
DCAR_008007 Daucus carota HOM05D007507 ORTHO05D009420 6.3e-15 84.7 138 39.1
Oeu064800.1 Olea europaea HOM05D007507 ORTHO05D009420 1.4e-14 83.6 120 44.2
PSO541G3558 Papaver somniferum HOM05D007507 ORTHO05D009420 5.3e-14 81.6 84 52.4
Rhsim13G0180100 Rhododendron simsii HOM05D007507 ORTHO05D009420 6.9e-14 81.3 85 51.8
SEGI_17757 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 1.5e-13 80.1 70 57.1
Migut.M01111 Erythranthe guttata HOM05D007507 ORTHO05D009420 2.0e-13 79.7 129 41.9
Psat1g203160 Pisum sativum HOM05D007507 ORTHO05D009420 7.7e-13 77.8 97 45.4
SEGI_35508 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 3.2e-11 72.4 99 41.4
Peaxi162Scf00926g00516 Petunia axillaris HOM05D007507 ORTHO05D009420 1.2e-10 70.5 144 35.4
SalBow8G4682 Salvia bowleyana HOM05D007507 ORTHO05D009420 2.7e-10 69.3 129 40.3
SEGI_36970 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 6.1e-10 68.2 86 45.3
arahy.Tifrunner.gnm1.ann1.PE4GJ8 Arachis hypogaea HOM05D000372 ORTHO05D009420 5.1e-09 65.1 48 68.8
SalBow8G0489 Salvia bowleyana HOM05D007507 ORTHO05D009420 1.5e-08 63.5 70 57.1
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.7e-08 61.6 111 43.2
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 9.7e-08 60.8 73 49.3
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.7e-07 60.1 73 49.3
COL.COLO4_18499 Corchorus olitorius HOM05D003527 ORTHO05D004099 6.3e-07 58.2 109 35.8
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 6.3e-07 58.2 67 50.7
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 6.3e-07 58.2 67 50.7
Peaxi162Scf00165g01520 Petunia axillaris HOM05D003527 ORTHO05D004099 6.3e-07 58.2 69 50.7
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 6.3e-07 58.2 69 47.8
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 8.2e-07 57.8 67 50.7
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 8.2e-07 57.8 73 43.8
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 1.1e-06 57.4 70 44.3
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 1.1e-06 57.4 71 49.3
COL.COLO4_31422 Corchorus olitorius HOM05D007507 ORTHO05D009420 1.8e-06 56.6 42 71.4
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 1.8e-06 56.6 69 49.3
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 1.8e-06 56.6 67 50.7
Sed0011659 Sechium edule HOM05D003527 ORTHO05D004099 1.8e-06 56.6 74 44.6
ATR0680G191 Amborella trichopoda HOM05D003527 ORTHO05D004099 2.4e-06 56.2 68 47.1
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 2.4e-06 56.2 73 45.2
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 2.4e-06 56.2 70 48.6
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.4e-06 56.2 130 32.3
Phvul.008G099800 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 2.4e-06 56.2 72 50.0
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 2.4e-06 56.2 72 47.2
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 2.4e-06 56.2 72 50.0
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 3.1e-06 55.8 119 37.8
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 3.1e-06 55.8 72 44.4
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 3.1e-06 55.8 70 47.1
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 3.1e-06 55.8 72 44.4
Gohir.A11G326600 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.1e-06 55.8 130 32.3
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 3.1e-06 55.8 101 42.6
SalBow8G0028 Salvia bowleyana HOM05D002091 ORTHO05D002140 3.1e-06 55.8 124 37.9
Hund21209 Selenicereus undatus HOM05D007507 ORTHO05D009420 3.1e-06 55.8 58 53.4
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 4.1e-06 55.5 70 44.3
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 4.1e-06 55.5 71 45.1
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 4.1e-06 55.5 67 47.8
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 4.1e-06 55.5 70 47.1
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 4.1e-06 55.5 67 49.3
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 4.1e-06 55.5 70 47.1
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 5.3e-06 55.1 70 44.3
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 5.3e-06 55.1 70 47.1
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 5.3e-06 55.1 77 44.2
TWI74G0830 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 5.3e-06 55.1 68 51.5
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 6.9e-06 54.7 69 43.5
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 6.9e-06 54.7 69 43.5
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 6.9e-06 54.7 69 47.8
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 6.9e-06 54.7 71 47.9
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 6.9e-06 54.7 72 48.6
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 6.9e-06 54.7 69 43.5
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 6.9e-06 54.7 72 44.4
Haze_20770 Corylus avellana HOM05D003527 ORTHO05D004099 9.1e-06 54.3 70 45.7
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 9.1e-06 54.3 70 44.3
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 9.1e-06 54.3 67 47.8
FAN11G1093 Fragaria x ananassa HOM05D003527 ORTHO05D004099 9.1e-06 54.3 76 46.1
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 9.1e-06 54.3 72 43.1
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 9.1e-06 54.3 72 43.1
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 9.1e-06 54.3 71 42.3
Potri.009G030100 Populus trichocarpa HOM05D003527 ORTHO05D004099 9.1e-06 54.3 69 43.5
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 9.1e-06 54.3 69 46.4


User provided reference genes

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