Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p042043 Quercus lobata HOM05D002986 ORTHO05D007611 5.0e-78 294.3 139 100.0
Lj7A254T21 Lonicera japonica HOM05D002986 ORTHO05D007611 3.3e-37 158.7 127 55.9
Lj7A250T23 Lonicera japonica HOM05D002986 ORTHO05D007611 9.5e-37 157.1 127 55.9
TAR624G0606 Trochodendron aralioides HOM05D002986 ORTHO05D007611 1.2e-36 156.8 128 57.8
Haze_06370 Corylus avellana HOM05D002986 ORTHO05D007611 5.8e-34 147.9 84 78.6
TPR.G25962 Trifolium pratense HOM05D002986 ORTHO05D007611 7.5e-34 147.5 120 58.3
CiPaw.10G052700 Carya illinoinensis HOM05D002986 ORTHO05D007611 2.9e-33 145.6 86 74.4
Cfa000530 Carpinus fangiana HOM05D002986 ORTHO05D007611 6.4e-33 144.4 84 76.2
vmacro03903 Vaccinium macrocarpon HOM05D002986 ORTHO05D007611 1.1e-32 143.7 113 58.4
Potri.011G057900 Populus trichocarpa HOM05D002986 ORTHO05D007611 5.1e-30 134.8 91 64.8
Sabra11G0040100 Salix brachista HOM05D002986 ORTHO05D007611 8.6e-30 134.0 91 64.8
TWI63G1258 Tripterygium wilfordii HOM05D002986 ORTHO05D007611 3.3e-29 132.1 93 62.4
Phvul.010G102600 Phaseolus vulgaris HOM05D002986 ORTHO05D007611 9.5e-29 130.6 93 60.2
Aqoxy1G00388 Aquilegia oxysepala HOM05D002986 ORTHO05D007611 1.2e-28 130.2 88 64.8
Glyma.13G235200 Glycine max HOM05D002986 ORTHO05D007611 2.1e-28 129.4 93 59.1
VMungo0331G1630 Vigna mungo HOM05D002986 ORTHO05D007611 2.8e-28 129.0 93 59.1
Dinv40602 Davidia involucrata HOM05D002986 ORTHO05D007611 4.7e-28 128.3 94 61.7
arahy.Tifrunner.gnm1.ann1.IL2A8L Arachis hypogaea HOM05D002986 ORTHO05D007611 6.2e-28 127.9 85 63.5
TPR.G11746 Trifolium pratense HOM05D002986 ORTHO05D007611 3.1e-27 125.6 108 52.8
Rhsim13G0180300 Rhododendron simsii HOM05D002986 ORTHO05D007611 4.0e-27 125.2 93 59.1
GSVIVG01011280001 Vitis vinifera HOM05D002986 ORTHO05D007611 4.0e-27 125.2 87 67.8
TAR624G1385 Trochodendron aralioides HOM05D002986 ORTHO05D007611 5.2e-27 124.8 94 56.4
Prupe.4G052800 Prunus persica HOM05D002986 ORTHO05D007611 1.5e-26 123.2 85 63.5
Actinidia05655 Actinidia chinensis HOM05D002986 ORTHO05D007611 7.6e-26 120.9 85 58.8
MSTRG.7361 Avicennia marina HOM05D002986 ORTHO05D007611 9.9e-26 120.6 85 56.5
Atru.chr10.1787 Acer truncatum HOM05D002986 ORTHO05D007611 1.3e-25 120.2 85 64.7
FAN17G1471 Fragaria x ananassa HOM05D002986 ORTHO05D007611 1.3e-25 120.2 85 62.4
arahy.Tifrunner.gnm1.ann1.IYAJ8R Arachis hypogaea HOM05D002986 ORTHO05D007611 2.2e-25 119.4 80 63.8
CSS0040504 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D007611 2.2e-25 119.4 84 60.7
CSS0042999 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D007611 2.2e-25 119.4 84 60.7
FAN07G2492 Fragaria x ananassa HOM05D002986 ORTHO05D007611 2.2e-25 119.4 85 62.4
FAN12G1172 Fragaria x ananassa HOM05D002986 ORTHO05D007611 2.9e-25 119.0 88 60.2
RcHm_v2.0_Chr5g0009291 Rosa chinensis HOM05D002986 ORTHO05D007611 4.9e-25 118.2 90 60.0
FvH4_4g07830 Fragaria vesca HOM05D002986 ORTHO05D007611 8.4e-25 117.5 85 61.2
Psat1g202920 Pisum sativum HOM05D002986 ORTHO05D007611 8.4e-25 117.5 85 60.0
Ciclev10015063m.g Citrus clementina HOM05D002986 ORTHO05D007611 1.4e-24 116.7 88 56.8
Gohir.A05G158800 Gossypium hirsutum HOM05D002986 ORTHO05D007611 1.4e-24 116.7 87 59.8
Lj4g0020646 Lotus japonicus HOM05D002986 ORTHO05D007611 1.9e-24 116.3 93 54.8
Lj6g0015281 Lotus japonicus HOM05D002986 ORTHO05D007611 1.9e-24 116.3 93 55.9
Peaxi162Scf00099g00032 Petunia axillaris HOM05D002986 ORTHO05D007611 2.4e-24 115.9 85 60.0
Gohir.D05G161466 Gossypium hirsutum HOM05D002986 ORTHO05D007611 3.2e-24 115.5 87 59.8
Gorai.009G166600 Gossypium raimondii HOM05D002986 ORTHO05D007611 3.2e-24 115.5 87 59.8
Nn1g06408 Nelumbo nucifera HOM05D002986 ORTHO05D007611 4.1e-24 115.2 85 60.0
FAN16G0081 Fragaria x ananassa HOM05D002986 ORTHO05D007611 5.4e-24 114.8 85 62.4
Nitab4.5_0001955g0120 Nicotiana tabacum HOM05D002986 ORTHO05D007611 5.4e-24 114.8 87 58.6
Nitab4.5_0017998g0010 Nicotiana tabacum HOM05D002986 ORTHO05D007611 5.4e-24 114.8 86 60.5
FAN22G0034 Fragaria x ananassa HOM05D002986 ORTHO05D007611 7.1e-24 114.4 85 61.2
Oeu056521.1 Olea europaea HOM05D002986 ORTHO05D007611 7.1e-24 114.4 85 55.3
PGSC0003DMG401031751 Solanum tuberosum HOM05D002986 ORTHO05D007611 1.6e-23 113.2 86 57.0
DCAR_007997 Daucus carota HOM05D002986 ORTHO05D007611 2.1e-23 112.8 88 56.8
Solyc02g077650.2 Solanum lycopersicum HOM05D002986 ORTHO05D007611 2.1e-23 112.8 86 57.0
Sopen02g022550 Solanum pennellii HOM05D002986 ORTHO05D007611 2.1e-23 112.8 86 57.0
Lalb_Chr18g0059371 Lupinus albus HOM05D002986 ORTHO05D007611 2.7e-23 112.5 91 54.9
Ca_00364_v3 Cicer arietinum L. HOM05D002986 ORTHO05D007611 3.5e-23 112.1 85 57.6
CAN.G529.58 Capsicum annuum HOM05D002986 ORTHO05D007611 4.6e-23 111.7 86 57.0
MD10G1288900 Malus domestica HOM05D002986 ORTHO05D007611 2.3e-22 109.4 93 54.8
Manes.17G049500 Manihot esculenta HOM05D002986 ORTHO05D007611 2.3e-22 109.4 85 57.6
Migut.M01106 Erythranthe guttata HOM05D002986 ORTHO05D007611 3.9e-22 108.6 84 53.6
THA.LOC104798403 Tarenaya hassleriana HOM05D002986 ORTHO05D007611 8.6e-22 107.5 89 56.2
TAR626G0685 Trochodendron aralioides HOM05D002986 ORTHO05D007611 8.6e-22 107.5 106 49.1
MELO3C035724.2 Cucumis melo HOM05D002986 ORTHO05D007611 1.9e-21 106.3 85 55.3
ClCG03G008000 Citrullus lanatus HOM05D002986 ORTHO05D007611 2.5e-21 105.9 85 52.9
Sed0000822 Sechium edule HOM05D002986 ORTHO05D007611 5.6e-21 104.8 94 50.0
SGA_v2.0_scaffold22G09659 Striga asiatica HOM05D002986 ORTHO05D007611 5.6e-21 104.8 101 45.5
CsaV3_1G012580 Cucumis sativus L. HOM05D002986 ORTHO05D007611 1.2e-20 103.6 85 52.9
Eucgr.E03340 Eucalyptus grandis HOM05D002986 ORTHO05D007611 2.1e-20 102.8 119 46.2
Sc17g0005920 Simmondsia chinensis HOM05D002986 ORTHO05D007611 2.1e-20 102.8 94 50.0
AL8G12410 Arabidopsis lyrata HOM05D002986 ORTHO05D007611 4.7e-20 101.7 89 50.6
COL.COLO4_31418 Corchorus olitorius HOM05D002986 ORTHO05D007611 6.2e-20 101.3 80 62.5
Thhalv10000872m.g Eutrema salsugineum HOM05D002986 ORTHO05D007611 8.1e-20 100.9 89 49.4
PSO832G1556 Papaver somniferum HOM05D002986 ORTHO05D007611 8.1e-20 100.9 92 50.0
Ca_00602_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 1.4e-19 100.1 74 58.1
AT5G46100 Arabidopsis thaliana HOM05D002986 ORTHO05D007611 2.4e-19 99.4 89 48.3
HPP92_009975 Vanilla planifolia HOM05D002986 ORTHO05D007611 3.1e-19 99.0 104 44.2
Carub.0008s0183 Capsella rubella HOM05D002986 ORTHO05D007611 4.0e-19 98.6 89 49.4
PSO210G3062 Papaver somniferum HOM05D002986 ORTHO05D007611 6.8e-19 97.8 92 50.0
Ah.09g237590 Amaranthus hybridus HOM05D002986 ORTHO05D007611 8.9e-19 97.4 98 44.9
EL10Ac8g20438 Beta vulgaris HOM05D002986 ORTHO05D007611 1.2e-18 97.1 100 44.0
ECA234G3389 Erigeron canadensis HOM05D002986 ORTHO05D007611 1.5e-18 96.7 85 47.1
Medtr2g014510 Medicago truncatula HOM05D002986 ORTHO05D007611 1.5e-18 96.7 80 55.0
SHI00257 Sapria himalayana HOM05D002986 ORTHO05D007611 1.5e-18 96.7 95 47.4
A06p46180 Brassica napus HOM05D002986 ORTHO05D007611 2.6e-18 95.9 89 47.2
C02p47050 Brassica napus HOM05D002986 ORTHO05D007611 2.6e-18 95.9 89 48.3
C07p29280 Brassica napus HOM05D002986 ORTHO05D007611 2.6e-18 95.9 89 47.2
BolC2t10753H Brassica oleracea HOM05D002986 ORTHO05D007611 2.6e-18 95.9 89 48.3
BolC7t43470H Brassica oleracea HOM05D002986 ORTHO05D007611 2.6e-18 95.9 89 47.2
BraA06t27482Z Brassica rapa HOM05D002986 ORTHO05D007611 2.6e-18 95.9 89 47.2
HanXRQChr11g0346401 Helianthus annuus HOM05D002986 ORTHO05D007611 2.6e-18 95.9 91 46.2
Cc02_g13870 Coffea canephora HOM05D002986 ORTHO05D007611 3.4e-18 95.5 85 49.4
Aa31LG9G6870 Aethionema arabicum HOM05D002986 ORTHO05D007611 4.4e-18 95.1 86 48.8
AUR62014868 Chenopodium quinoa HOM05D002986 ORTHO05D007611 4.4e-18 95.1 100 45.0
AUR62031074 Chenopodium quinoa HOM05D002986 ORTHO05D007611 4.4e-18 95.1 100 43.0
Sp2g10960 Schrenkiella parvula HOM05D002986 ORTHO05D007611 9.9e-18 94.0 89 47.2
FvH4_3g08550 Fragaria vesca HOM05D002986 ORTHO05D007611 2.2e-17 92.8 85 54.1
FAN11G0723 Fragaria x ananassa HOM05D002986 ORTHO05D007611 2.2e-17 92.8 85 54.1
CARHR175750 Cardamine hirsuta HOM05D002986 ORTHO05D007611 3.8e-17 92.0 89 46.1
QL07p003708 Quercus lobata HOM05D002986 ORTHO05D007611 1.9e-16 89.7 48 85.4
Lsat_1_v5_gn_4_51801 Lactuca sativa HOM05D002986 ORTHO05D007611 5.4e-16 88.2 91 40.7
FAN25G0667 Fragaria x ananassa HOM05D002986 ORTHO05D007611 1.2e-15 87.0 85 50.6
Os01g0672166 Oryza sativa ssp. japonica HOM05D002986 ORTHO05D007611 2.1e-15 86.3 93 45.2
GSVIVG01032691001 Vitis vinifera HOM05D002986 ORTHO05D007611 1.7e-14 83.2 80 53.8
BcaC03g16829 Brassica carinata HOM05D002986 ORTHO05D007611 5.1e-14 81.6 80 47.5
Duzib235G0042 Durio zibethinus HOM05D002986 ORTHO05D007611 4.3e-13 78.6 58 63.8
ATR0564G055 Amborella trichopoda HOM05D002986 ORTHO05D007611 3.6e-12 75.5 84 38.1
Zm00001eb359970 Zea mays HOM05D002986 ORTHO05D007611 4.8e-12 75.1 93 41.9
Thecc.06G180800 Theobroma cacao HOM05D002986 ORTHO05D007611 3.1e-11 72.4 52 63.5
Eucgr.E03142 Eucalyptus grandis HOM05D002986 ORTHO05D007611 3.8e-09 65.5 56 53.6
Eucgr.E03336 Eucalyptus grandis HOM05D002986 ORTHO05D007611 4.9e-09 65.1 53 56.6
Eucgr.E03343 Eucalyptus grandis HOM05D002986 ORTHO05D007611 1.4e-08 63.5 56 51.8
PGR083G2565 Punica granatum HOM05D002986 ORTHO05D007611 1.4e-08 63.5 60 48.3
Eucgr.E03338 Eucalyptus grandis HOM05D002986 ORTHO05D007611 1.3e-06 57.0 50 52.0
SEGI_18794 Sequoiadendron giganteum HOM05D002986 ORTHO05D007611 2.3e-06 56.2 79 32.9
Eucgr.E03144 Eucalyptus grandis HOM05D002986 ORTHO05D007611 5.1e-06 55.1 112 33.0
CDE09G0204 Ceratophyllum demersum HOM05D002986 ORTHO05D007611 6.6e-06 54.7 45 53.3
HanXRQChr09g0260571 Helianthus annuus HOM05D007426 ORTHO05D009167 8.7e-06 54.3 61 36.1


User provided reference genes

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