Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 0.0e+00 1365.5 748 100.0
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 1.5e-309 1065.8 747 76.6
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 9.9e-290 1000.0 748 71.9
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 1.9e-261 906.0 655 75.0
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 5.7e-229 798.1 755 61.7
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 1.4e-227 793.5 753 60.6
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 1.2e-226 790.4 748 59.8
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 3.4e-221 772.3 751 58.3
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 4.4e-213 745.3 747 56.9
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 4.1e-211 738.8 748 57.6
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 7.0e-211 738.0 748 56.8
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 3.0e-209 732.6 753 56.7
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 8.6e-209 731.1 762 55.9
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 1.1e-208 730.7 752 56.8
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 4.3e-208 728.8 752 56.1
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 1.8e-206 723.4 746 56.6
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 5.2e-206 721.8 752 55.7
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 6.8e-206 721.5 752 55.7
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 1.5e-205 720.3 748 55.9
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 2.6e-205 719.5 759 55.3
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 1.9e-203 713.4 759 54.7
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 2.4e-203 713.0 747 55.8
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 9.2e-203 711.1 752 54.9
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 6.0e-202 708.4 758 54.6
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 3.0e-201 706.1 757 53.6
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 1.1e-198 697.6 757 53.0
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 1.5e-197 693.7 751 53.8
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 1.9e-195 686.8 750 51.7
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 7.8e-194 681.4 750 52.3
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 1.3e-193 680.6 718 54.7
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 3.9e-193 679.1 720 55.6
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 3.9e-193 679.1 750 52.1
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 8.6e-193 677.9 752 52.4
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 1.5e-192 677.2 755 53.1
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 6.2e-191 671.8 763 55.2
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 1.2e-189 667.5 751 52.3
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 1.5e-189 667.2 753 52.1
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 2.6e-189 666.4 750 51.2
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 1.3e-188 664.1 751 51.8
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 3.8e-188 662.5 748 52.8
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 1.5e-184 650.6 748 52.1
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 3.6e-183 646.0 754 50.9
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 1.8e-182 643.7 754 51.3
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 1.9e-179 633.6 755 49.7
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 4.6e-178 629.0 786 49.5
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 4.0e-174 615.9 750 49.6
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 1.2e-173 614.4 747 51.5
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 1.1e-160 571.2 756 47.0
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 4.0e-158 562.8 759 46.1
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 6.5e-156 555.4 759 45.7
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 5.5e-155 552.4 754 45.8
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 1.3e-153 547.7 790 44.6
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 1.3e-153 547.7 790 44.6
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 1.3e-151 541.2 770 45.8
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 5.9e-149 532.3 741 44.1
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 5.5e-147 525.8 741 44.4
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 7.2e-147 525.4 729 45.3
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 9.3e-147 525.0 738 45.5
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 1.3e-143 514.6 750 44.1
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 2.8e-143 513.5 723 44.4
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 3.7e-143 513.1 732 45.5
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 2.4e-142 510.4 682 48.1
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 3.1e-142 510.0 755 44.0
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 4.1e-142 509.6 795 44.3
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 2.0e-136 490.7 757 42.3
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 6.9e-134 482.3 548 53.5
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 2.6e-133 480.3 769 42.9
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 8.5e-132 475.3 838 40.1
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 1.1e-131 474.9 747 41.6
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 1.6e-130 471.1 758 43.0
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 1.4e-129 468.0 763 42.2
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 6.3e-127 459.1 759 40.6
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 1.2e-122 444.9 603 46.4
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 5.0e-116 422.9 306 73.5
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 1.2e-114 418.3 742 41.5
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 2.7e-109 400.6 335 64.2
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 2.9e-108 397.1 751 40.1
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 1.1e-102 378.6 477 49.9
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 7.0e-102 375.9 759 38.1
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 6.4e-95 352.8 387 54.5
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 5.8e-88 329.7 529 42.2
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 4.3e-83 313.5 242 68.2
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 2.3e-81 307.8 504 41.7
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 7.5e-80 302.8 321 53.6
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 5.4e-78 296.6 268 58.2
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 1.3e-55 222.2 261 49.0
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 9.3e-54 216.1 329 44.7
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 1.3e-50 205.7 444 35.6
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 2.4e-49 201.4 159 68.6
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.6e-48 198.0 158 67.1
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 9.6e-43 179.5 210 49.5
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 3.4e-32 144.4 92 81.5
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 9.4e-30 136.3 100 68.0
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 9.1e-25 119.8 155 46.5
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 2.0e-24 118.6 186 38.2
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 1.7e-18 99.0 83 60.2
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 6.3e-18 97.1 105 53.3
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 5.3e-17 94.0 84 52.4
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 3.7e-10 71.2 237 29.1
MELO3C029166.2 Cucumis melo HOM05D005813 ORTHO05D009576 1.4e-09 69.3 149 35.6
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 4.2e-06 57.8 137 30.7


User provided reference genes

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