Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p036199 Quercus lobata HOM05D006482 ORTHO05D008149 2.6e-30 134.8 72 100.0
GSVIVG01038627001 Vitis vinifera HOM05D006482 ORTHO05D008149 4.8e-24 114.0 72 84.7
CiPaw.05G203100 Carya illinoinensis HOM05D006482 ORTHO05D008149 8.2e-24 113.2 72 81.9
Ciclev10023193m.g Citrus clementina HOM05D006482 ORTHO05D008149 5.3e-23 110.5 72 81.9
Gohir.A08G103900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 9.0e-23 109.8 72 81.9
MD01G1227400 Malus domestica HOM05D006482 ORTHO05D008149 1.2e-22 109.4 72 81.9
Prupe.2G317400 Prunus persica HOM05D006482 ORTHO05D008149 1.2e-22 109.4 72 80.6
CANSAT21G0227 Cannabis sativa HOM05D006482 ORTHO05D008149 2.6e-22 108.2 72 76.4
Gohir.D08G115300 Gossypium hirsutum HOM05D006482 ORTHO05D008149 2.6e-22 108.2 72 80.6
Gorai.004G124200 Gossypium raimondii HOM05D006482 ORTHO05D008149 2.6e-22 108.2 72 80.6
RcHm_v2.0_Chr1g0382671 Rosa chinensis HOM05D006482 ORTHO05D008149 2.6e-22 108.2 72 79.2
FvH4_7g32700 Fragaria vesca HOM05D006482 ORTHO05D008149 4.5e-22 107.5 72 77.8
FAN01G3112 Fragaria x ananassa HOM05D006482 ORTHO05D008149 4.5e-22 107.5 72 77.8
FAN03G2872 Fragaria x ananassa HOM05D006482 ORTHO05D008149 4.5e-22 107.5 72 77.8
Thecc.03G206900 Theobroma cacao HOM05D006482 ORTHO05D008149 5.8e-22 107.1 72 79.2
Duzib205G0332 Durio zibethinus HOM05D006482 ORTHO05D008149 1.0e-21 106.3 72 79.2
PGR142G0199 Punica granatum HOM05D006482 ORTHO05D008149 1.0e-21 106.3 72 75.0
Atru.chr12.2369 Acer truncatum HOM05D006482 ORTHO05D008149 1.3e-21 105.9 72 77.8
COL.COLO4_14353 Corchorus olitorius HOM05D006482 ORTHO05D008149 3.8e-21 104.4 72 76.4
Lj1g0026941 Lotus japonicus HOM05D006482 ORTHO05D008149 3.8e-21 104.4 72 76.4
QL09p007382 Quercus lobata HOM05D006482 ORTHO05D008149 6.5e-21 103.6 142 50.7
CSS0017170 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 8.4e-21 103.2 72 75.0
Psat5g073480 Pisum sativum HOM05D006482 ORTHO05D008149 8.4e-21 103.2 72 75.0
Glyma.04G230700 Glycine max HOM05D006482 ORTHO05D008149 3.2e-20 101.3 72 72.2
Phvul.009G047100 Phaseolus vulgaris HOM05D006482 ORTHO05D008149 3.2e-20 101.3 72 73.6
Gorai.008G265700 Gossypium raimondii HOM05D006482 ORTHO05D008149 4.2e-20 100.9 72 76.4
Potri.015G006500 Populus trichocarpa HOM05D006482 ORTHO05D008149 4.2e-20 100.9 72 72.2
Manes.01G041500 Manihot esculenta HOM05D006482 ORTHO05D008149 5.5e-20 100.5 72 72.2
Potri.012G022900 Populus trichocarpa HOM05D006482 ORTHO05D008149 5.5e-20 100.5 72 72.2
TAR374G1512 Trochodendron aralioides HOM05D006482 ORTHO05D008149 5.5e-20 100.5 72 75.0
Nn3g18841 Nelumbo nucifera HOM05D006482 ORTHO05D008149 9.3e-20 99.8 72 76.4
Lalb_Chr11g0067291 Lupinus albus HOM05D006482 ORTHO05D008149 1.2e-19 99.4 72 70.8
Sabra15G0004500 Salix brachista HOM05D006482 ORTHO05D008149 1.2e-19 99.4 72 70.8
arahy.Tifrunner.gnm1.ann1.ZIU4UI Arachis hypogaea HOM05D006482 ORTHO05D008149 1.6e-19 99.0 72 68.1
TWI39G0373 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 1.6e-19 99.0 72 69.4
Hma1.2p1_0456F.1_g156710 Hydrangea macrophylla HOM05D006482 ORTHO05D008149 2.1e-19 98.6 72 73.6
arahy.Tifrunner.gnm1.ann1.CVH3M3 Arachis hypogaea HOM05D006482 ORTHO05D008149 2.7e-19 98.2 72 68.1
Eucgr.K00422 Eucalyptus grandis HOM05D006482 ORTHO05D008149 3.5e-19 97.8 72 70.8
Medtr3g092270 Medicago truncatula HOM05D006482 ORTHO05D008149 4.6e-19 97.4 66 77.3
TAR629G1047 Trochodendron aralioides HOM05D006482 ORTHO05D008149 4.6e-19 97.4 72 73.6
Lalb_Chr23g0271851 Lupinus albus HOM05D006482 ORTHO05D008149 6.1e-19 97.1 72 72.2
TPR.G14847 Trifolium pratense HOM05D006482 ORTHO05D008149 6.1e-19 97.1 65 75.4
Aa31LG3G9780 Aethionema arabicum HOM05D006482 ORTHO05D008149 7.9e-19 96.7 72 69.4
Gohir.A12G246900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 7.9e-19 96.7 72 72.2
Duzib068G1219 Durio zibethinus HOM05D006482 ORTHO05D008149 1.3e-18 95.9 87 65.5
MD07G1297700 Malus domestica HOM05D006482 ORTHO05D008149 1.3e-18 95.9 98 61.2
TWI14G0741 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 1.3e-18 95.9 68 73.5
Dinv18742 Davidia involucrata HOM05D006482 ORTHO05D008149 1.8e-18 95.5 68 72.1
PSO063G1999 Papaver somniferum HOM05D006482 ORTHO05D008149 1.8e-18 95.5 72 70.8
Actinidia27284 Actinidia chinensis HOM05D000567 ORTHO05D000767 3.0e-18 94.7 72 70.8
Dinv29224 Davidia involucrata HOM05D006482 ORTHO05D008149 3.0e-18 94.7 67 73.1
Rhsim03G0214200 Rhododendron simsii HOM05D006482 ORTHO05D008149 3.9e-18 94.4 72 66.7
Sed0025475 Sechium edule HOM05D006482 ORTHO05D008149 3.9e-18 94.4 72 66.7
Ah.13g070630 Amaranthus hybridus HOM05D006482 ORTHO05D008149 5.1e-18 94.0 73 72.6
CiPaw.06G042200 Carya illinoinensis HOM05D006482 ORTHO05D008149 5.1e-18 94.0 72 65.3
Glyma.04G154600 Glycine max HOM05D006482 ORTHO05D008149 5.1e-18 94.0 68 72.1
EL10Ac3g05199 Beta vulgaris HOM05D006482 ORTHO05D008149 6.7e-18 93.6 72 69.4
Carub.0008s1398 Capsella rubella HOM05D006482 ORTHO05D008149 8.7e-18 93.2 72 66.7
AL8G28600 Arabidopsis lyrata HOM05D006482 ORTHO05D008149 1.1e-17 92.8 72 66.7
Oeu010737.1 Olea europaea HOM05D006482 ORTHO05D008149 1.5e-17 92.4 72 65.3
Thhalv10015198m.g Eutrema salsugineum HOM05D006482 ORTHO05D008149 1.9e-17 92.0 72 65.3
Sp6g15770 Schrenkiella parvula HOM05D006482 ORTHO05D008149 1.9e-17 92.0 72 65.3
AT5G53650 Arabidopsis thaliana HOM05D006482 ORTHO05D008149 2.5e-17 91.7 72 65.3
ClCG01G000130 Citrullus lanatus HOM05D006482 ORTHO05D008149 2.5e-17 91.7 72 65.3
CsaV3_5G000030 Cucumis sativus L. HOM05D006482 ORTHO05D008149 2.5e-17 91.7 72 66.7
A03p15030 Brassica napus HOM05D006482 ORTHO05D008149 3.3e-17 91.3 71 66.2
BraA03t10797Z Brassica rapa HOM05D006482 ORTHO05D008149 3.3e-17 91.3 71 66.2
Glyma.06G134500 Glycine max HOM05D006482 ORTHO05D008149 3.3e-17 91.3 72 68.1
BcaB01g04252 Brassica carinata HOM05D006482 ORTHO05D008149 4.3e-17 90.9 71 66.2
Hund21041 Selenicereus undatus HOM05D006482 ORTHO05D008149 4.3e-17 90.9 76 68.4
Nitab4.5_0008141g0050 Nicotiana tabacum HOM05D006482 ORTHO05D008149 5.7e-17 90.5 72 65.3
THA.LOC109117152 Tarenaya hassleriana HOM05D006482 ORTHO05D008149 5.7e-17 90.5 69 71.0
MELO3C005924.2 Cucumis melo HOM05D006482 ORTHO05D008149 7.4e-17 90.1 72 65.3
C03p17520 Brassica napus HOM05D006482 ORTHO05D008149 9.7e-17 89.7 71 64.8
BolC3t14165H Brassica oleracea HOM05D006482 ORTHO05D008149 9.7e-17 89.7 71 64.8
vmacro06428 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 9.7e-17 89.7 72 63.9
CARHR266810 Cardamine hirsuta HOM05D006482 ORTHO05D008149 1.3e-16 89.4 72 62.5
BcaC01g06263 Brassica carinata HOM05D006482 ORTHO05D008149 1.6e-16 89.0 71 64.8
Hund09702 Selenicereus undatus HOM05D006482 ORTHO05D008149 2.2e-16 88.6 72 65.3
Sc19g0000660 Simmondsia chinensis HOM05D006482 ORTHO05D008149 2.2e-16 88.6 72 68.1
CSS0001288 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 4.8e-16 87.4 72 65.3
CDE09G1364 Ceratophyllum demersum HOM05D001294 ORTHO05D001178 6.3e-16 87.0 71 66.2
Migut.E00300 Erythranthe guttata HOM05D006482 ORTHO05D008149 6.3e-16 87.0 73 69.9
Sc13g0010170 Simmondsia chinensis HOM05D006482 ORTHO05D008149 8.2e-16 86.7 72 61.1
PGSC0003DMG400012236 Solanum tuberosum HOM05D006482 ORTHO05D008149 8.2e-16 86.7 72 63.9
Nitab4.5_0002720g0020 Nicotiana tabacum HOM05D006482 ORTHO05D008149 2.4e-15 85.1 71 62.0
Peaxi162Scf00074g00224 Petunia axillaris HOM05D006482 ORTHO05D008149 3.1e-15 84.7 72 65.3
A02p10930 Brassica napus HOM05D006482 ORTHO05D008149 4.1e-15 84.3 71 60.6
Lsat_1_v5_gn_6_10060 Lactuca sativa HOM05D006482 ORTHO05D008149 4.1e-15 84.3 72 63.9
CSS0049934 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 5.3e-15 84.0 72 63.9
ECA233G2670 Erigeron canadensis HOM05D006482 ORTHO05D008149 5.3e-15 84.0 72 63.9
SalBow3G2365 Salvia bowleyana HOM05D006482 ORTHO05D008149 6.9e-15 83.6 73 63.0
Sed0001965 Sechium edule HOM05D006482 ORTHO05D008149 6.9e-15 83.6 69 62.3
BcaB05g22064 Brassica carinata HOM05D006482 ORTHO05D008149 1.2e-14 82.8 71 60.6
BraA02t06158Z Brassica rapa HOM05D006482 ORTHO05D008149 1.5e-14 82.4 71 59.2
Sopen08g031390 Solanum pennellii HOM05D006482 ORTHO05D008149 1.5e-14 82.4 72 59.7
Solyc08g083200.3 Solanum lycopersicum HOM05D006482 ORTHO05D008149 2.0e-14 82.0 72 59.7
HanXRQChr07g0192381 Helianthus annuus HOM05D006482 ORTHO05D008149 2.6e-14 81.6 72 59.7
Duzib084G1447 Durio zibethinus HOM05D006482 ORTHO05D008149 3.4e-14 81.3 61 72.1
BcaC03g14399 Brassica carinata HOM05D006482 ORTHO05D008149 5.9e-14 80.5 71 57.7
C02p18140 Brassica napus HOM05D006482 ORTHO05D008149 5.9e-14 80.5 71 57.7
BolC2t07944H Brassica oleracea HOM05D006482 ORTHO05D008149 5.9e-14 80.5 71 57.7
AUR62035606 Chenopodium quinoa HOM05D006482 ORTHO05D008149 7.7e-14 80.1 96 55.2
Gohir.D12G247600 Gossypium hirsutum HOM05D006482 ORTHO05D008149 1.7e-13 79.0 72 66.7
unitig_699.g19497 Utricularia gibba HOM05D006482 ORTHO05D008149 2.2e-13 78.6 70 60.0
Cc08_g16820 Coffea canephora HOM05D006482 ORTHO05D008149 1.1e-12 76.3 70 60.0
SEGI_31465 Sequoiadendron giganteum HOM05D006482 ORTHO05D008149 1.4e-12 75.9 65 61.5
FAN17G0467 Fragaria x ananassa HOM05D006482 ORTHO05D008149 1.2e-11 72.8 41 85.4
Sabra12G0010900 Salix brachista HOM05D006482 ORTHO05D008149 1.6e-11 72.4 131 38.9
Haze_00279 Corylus avellana HOM05D006482 ORTHO05D008149 4.6e-11 70.9 41 82.9
Os05g0535700 Oryza sativa ssp. japonica HOM05D006482 ORTHO05D008149 6.1e-11 70.5 71 53.5
CSS0018303 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.8e-10 68.9 43 76.7
CDE11G0870 Ceratophyllum demersum HOM05D006482 ORTHO05D008149 5.1e-10 67.4 105 45.7
Eucgr.E02459 Eucalyptus grandis HOM05D006482 ORTHO05D008149 5.1e-10 67.4 54 64.8
CSS0015195 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 6.7e-10 67.0 70 54.3
vmacro13845 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 6.7e-10 67.0 45 73.3
HPP92_020659 Vanilla planifolia HOM05D001695 ORTHO05D002735 6.7e-10 67.0 79 51.9
CSS0007382 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 8.8e-10 66.6 71 54.9
AUR62006020 Chenopodium quinoa HOM05D006482 ORTHO05D008149 2.0e-09 65.5 42 78.6
Rhsim07G0077300 Rhododendron simsii HOM05D006482 ORTHO05D008149 2.5e-09 65.1 42 76.2
FvH4_4g29090 Fragaria vesca HOM05D000768 ORTHO05D046510 2.2e-08 62.0 48 70.8
ATR0579G147 Amborella trichopoda HOM05D006482 ORTHO05D008149 3.7e-08 61.2 42 64.3
Zm00001eb294050 Zea mays HOM05D006482 ORTHO05D008149 6.3e-08 60.5 71 53.5
DCAR_006554 Daucus carota HOM05D006482 ORTHO05D008149 8.2e-08 60.1 41 73.2
FAN22G1213 Fragaria x ananassa HOM05D034724 ORTHO05D202753 2.4e-07 58.5 41 70.7


User provided reference genes

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