Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 4.9e-52 207.6 111 100.0
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 4.3e-16 88.2 125 54.4
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 1.3e-15 86.7 125 53.6
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 1.4e-14 83.2 126 50.0
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 1.4e-14 83.2 125 52.0
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 4.1e-14 81.6 94 54.3
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 9.0e-14 80.5 115 49.6
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 9.0e-14 80.5 111 51.4
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 1.2e-13 80.1 107 48.6
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.2e-13 80.1 111 49.5
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 1.5e-13 79.7 107 49.5
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 5.9e-13 77.8 109 49.5
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 1.7e-12 76.3 113 50.4
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 2.2e-12 75.9 113 53.1
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 2.9e-12 75.5 103 48.5
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 8.5e-12 73.9 110 50.0
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 8.5e-12 73.9 66 65.2
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 1.1e-11 73.6 90 55.6
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 1.4e-11 73.2 91 54.9
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 1.9e-11 72.8 108 50.0
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 2.5e-11 72.4 111 47.7
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 2.5e-11 72.4 41 87.8
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 2.5e-11 72.4 41 87.8
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 3.2e-11 72.0 44 81.8
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 3.2e-11 72.0 105 49.5
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 3.2e-11 72.0 106 49.1
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 4.2e-11 71.6 98 51.0
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 4.2e-11 71.6 97 52.6
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 4.2e-11 71.6 97 52.6
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 4.2e-11 71.6 118 45.8
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 4.2e-11 71.6 41 85.4
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 5.5e-11 71.2 119 46.2
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 5.5e-11 71.2 115 51.3
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 7.2e-11 70.9 99 49.5
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 9.4e-11 70.5 97 49.5
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 1.2e-10 70.1 41 82.9
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 1.2e-10 70.1 110 48.2
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 1.6e-10 69.7 109 48.6
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.6e-10 69.7 106 50.0
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 1.6e-10 69.7 118 47.5
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 2.1e-10 69.3 77 51.9
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 2.7e-10 68.9 117 45.3
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 2.7e-10 68.9 117 46.2
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 2.7e-10 68.9 41 82.9
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 3.6e-10 68.6 110 47.3
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 4.6e-10 68.2 115 44.3
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 4.6e-10 68.2 87 48.3
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 4.6e-10 68.2 97 52.6
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 4.6e-10 68.2 111 46.8
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 6.1e-10 67.8 49 69.4
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 6.1e-10 67.8 63 60.3
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 6.1e-10 67.8 63 60.3
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 6.1e-10 67.8 70 54.3
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 6.1e-10 67.8 77 51.9
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 7.9e-10 67.4 53 66.0
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 7.9e-10 67.4 80 57.5
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 7.9e-10 67.4 49 69.4
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 1.4e-09 66.6 97 48.5
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 1.4e-09 66.6 111 49.5
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 1.4e-09 66.6 49 69.4
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 1.8e-09 66.2 110 47.3
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 1.8e-09 66.2 108 42.6
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 1.8e-09 66.2 109 46.8
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 2.3e-09 65.9 63 58.7
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 2.3e-09 65.9 63 58.7
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 2.3e-09 65.9 77 48.1
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 2.3e-09 65.9 110 45.5
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 2.3e-09 65.9 77 50.6
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 2.3e-09 65.9 102 47.1
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 3.0e-09 65.5 110 47.3
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 3.0e-09 65.5 77 50.6
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 3.0e-09 65.5 99 46.5
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 3.0e-09 65.5 119 42.0
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 3.9e-09 65.1 57 61.4
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 3.9e-09 65.1 107 46.7
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 3.9e-09 65.1 77 50.6
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 3.9e-09 65.1 41 78.0
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 5.1e-09 64.7 77 50.6
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 6.7e-09 64.3 39 84.6
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 6.7e-09 64.3 111 48.6
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 6.7e-09 64.3 84 50.0
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 6.7e-09 64.3 42 71.4
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 8.8e-09 63.9 112 44.6
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 1.1e-08 63.5 81 48.1
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 1.5e-08 63.2 49 63.3
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 1.9e-08 62.8 106 46.2
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 1.9e-08 62.8 64 57.8
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 2.5e-08 62.4 120 42.5
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 4.3e-08 61.6 111 40.5
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 7.4e-08 60.8 54 53.7
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 7.4e-08 60.8 125 44.8
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 9.7e-08 60.5 52 59.6
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 8.2e-07 57.4 62 43.5
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 1.8e-06 56.2 39 69.2
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 2.4e-06 55.8 112 42.0
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 2.4e-06 55.8 111 41.4
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 6.9e-06 54.3 114 40.4


User provided reference genes

Program Settings