Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 8.8e-162 573.5 287 100.0
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 4.2e-148 528.1 276 94.9
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 7.2e-148 527.3 276 94.2
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 1.1e-143 513.5 276 90.2
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 2.4e-143 512.3 276 90.6
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 1.2e-142 510.0 276 88.4
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 1.7e-141 506.1 276 88.8
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 2.3e-141 505.8 276 88.0
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 1.5e-140 503.1 276 88.4
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 1.9e-140 502.7 276 87.7
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.9e-140 502.7 276 87.7
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 4.2e-140 501.5 276 87.7
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 4.2e-140 501.5 276 88.4
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 4.2e-140 501.5 276 86.2
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 7.2e-140 500.7 276 87.0
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 9.5e-140 500.4 276 87.7
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 9.5e-140 500.4 276 87.3
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 9.5e-140 500.4 276 87.0
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 1.2e-139 500.0 276 87.3
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 2.8e-139 498.8 276 86.2
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 4.7e-139 498.0 280 86.1
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 4.7e-139 498.0 276 86.6
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 1.0e-138 496.9 280 86.1
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.4e-138 496.5 276 86.2
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 1.8e-138 496.1 276 86.6
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 3.0e-138 495.4 276 85.9
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 8.9e-138 493.8 276 85.5
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 8.9e-138 493.8 276 86.2
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 8.9e-138 493.8 276 86.2
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 1.5e-137 493.0 276 85.5
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 2.0e-137 492.7 276 85.5
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 2.6e-137 492.3 276 85.5
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 9.8e-137 490.3 276 85.5
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 3.7e-136 488.4 276 84.8
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 6.3e-136 487.6 277 85.9
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 8.3e-136 487.3 276 83.3
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 1.4e-135 486.5 276 85.9
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 1.4e-135 486.5 276 84.4
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 1.8e-135 486.1 276 84.1
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.8e-135 486.1 276 84.8
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 4.1e-135 485.0 276 85.1
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 1.2e-134 483.4 276 83.7
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 1.2e-134 483.4 276 83.7
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 2.0e-134 482.6 275 84.7
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 2.7e-134 482.3 276 83.0
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 4.5e-134 481.5 276 84.1
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 5.9e-134 481.1 266 88.7
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 5.9e-134 481.1 276 81.9
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 7.8e-134 480.7 276 84.1
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 1.0e-133 480.3 276 83.3
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 1.3e-133 479.9 267 87.3
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 2.9e-133 478.8 276 86.2
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 2.9e-133 478.8 276 83.3
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 5.0e-133 478.0 276 83.0
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 5.0e-133 478.0 276 83.0
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 1.1e-132 476.9 276 83.3
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 1.1e-132 476.9 278 83.1
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 1.5e-132 476.5 276 83.3
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 1.9e-132 476.1 276 82.6
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 1.9e-132 476.1 276 83.0
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 1.9e-132 476.1 276 82.2
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 1.9e-132 476.1 276 81.9
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 1.9e-132 476.1 276 82.6
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 5.6e-132 474.6 276 83.0
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 5.6e-132 474.6 276 82.6
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 9.5e-132 473.8 274 83.2
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 9.5e-132 473.8 274 83.2
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 9.5e-132 473.8 274 83.2
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 6.1e-131 471.1 299 76.6
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 8.0e-131 470.7 276 80.4
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 1.4e-130 469.9 276 81.9
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 2.3e-130 469.2 276 81.2
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 5.2e-130 468.0 276 81.2
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 6.8e-130 467.6 276 79.3
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 6.8e-130 467.6 276 80.1
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 5.8e-129 464.5 276 81.2
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 9.8e-129 463.8 276 79.0
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 2.2e-128 462.6 276 77.9
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 4.9e-128 461.5 276 77.2
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 1.4e-127 459.9 257 86.0
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.9e-127 459.5 276 79.7
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 3.2e-127 458.8 276 80.4
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 2.7e-126 455.7 276 79.3
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 1.0e-125 453.8 261 85.8
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 1.1e-124 450.3 266 81.2
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 3.3e-124 448.7 313 72.2
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 4.7e-123 444.9 276 76.4
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 1.2e-121 440.3 276 79.0
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 1.2e-118 430.3 267 76.4
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 5.6e-116 421.4 230 87.8
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 4.7e-115 418.3 262 79.0
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 7.8e-110 401.0 271 75.6
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 1.5e-108 396.7 266 74.8
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 5.4e-103 378.3 276 64.1
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 7.8e-102 374.4 289 67.1
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 1.1e-100 370.5 203 88.7
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 9.6e-100 367.5 276 62.7
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 1.2e-94 350.5 276 60.1
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 3.5e-94 349.0 276 59.1
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 4.2e-87 325.5 269 69.9
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 5.4e-87 325.1 182 84.6
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.1e-82 310.8 182 83.5
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 7.1e-79 298.1 266 62.0
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 6.9e-74 281.6 184 76.6
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.6e-67 260.4 153 81.0
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.5e-65 253.8 166 78.9
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 5.0e-64 248.8 292 43.5
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 5.0e-64 248.8 292 43.5
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 7.9e-62 241.5 277 46.2
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 3.0e-61 239.6 130 88.5
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 2.0e-60 236.9 295 43.7
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 1.1e-55 221.1 130 81.5
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 3.3e-52 209.5 126 77.8
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 9.4e-39 164.9 91 84.6
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-33 146.7 100 68.0
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 6.1e-30 135.6 90 73.3
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 3.0e-29 133.3 88 67.0
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 5.2e-29 132.5 354 31.4
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 2.2e-27 127.1 78 74.4
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 9.5e-23 111.7 105 57.1
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 2.6e-20 103.6 74 73.0
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 2.0e-17 94.0 54 83.3
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 1.7e-16 90.9 58 75.9
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.4e-13 81.3 94 51.1
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 7.5e-12 75.5 46 76.1
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 8.3e-11 72.0 45 77.8
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 1.2e-09 68.2 74 48.6
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 6.0e-09 65.9 39 84.6
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 3.9e-08 63.2 33 84.8
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 3.6e-06 56.6 35 74.3


User provided reference genes

Program Settings